Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1540 ATGGGTGGACCTCCTTTGTCATATGCATCACAAAATAAGCTTTATTCAAACATTGTTGGGGTTCTTAAACTTCTGCACTTTTTAGCAGCTATAGCAAGGAAAAGACCAGTTCATTATGGTAACATTTTGTCGGCACTGCTGGAATTTGTTCCAAGTTTTGAGACGATAAGAGGGCGTCATGCTGCCAGCATACAGTATTCTATAAGATCTGCCCTTTTGGGATTCCTAAGGTGTATGCATCCGGCTTTTGTAGAGTCAAGAGATAGATTGCTAAAGGCTTTAAGAGCTATAAATGCTGGAGACGCTGCAGATCAAGTAATCAGGCAAGTGGACAAAATGGTGAAAGCTGCAGATCGAGCTTCACGTGATGCTTGGCTGGGCAAGGATGACCAATCTTCAAATCAGCTTAATGCATCAGTGGATCTAACAAGAAAAAGACCTAGGCTTCTGGACGACGATGATCTTCCCAATGGTCGAGAGGCTTCCAAGCAATTCCGCTTTGGTCCAGATGTTCACCCAATTTCCACGTCTCAAAAAGATGGTTCTCTTCAGAATGCCACCTCTAATGGGACATCCCACGATGTTCCTACGTTAGATGTTGAACTGACTCCTGCAGAGCAGATGATCGCGATGATTGGTGCCTTACTTGCTGAAGGGGAGCGAGGTGCAGAGTCGCTTGAAATTTTGATTTCAAATATTCATCCCGACTTGTTGGCTGATATTGTCATAACTAACATGAAGAACTTGCCCAAAGCTTCCCTTCCTTTATCTTGGCATGGGGACTTGCCTGTAACTCGACAAGGATGTAGTCATGTACAGGTTCTGGTGCCATCAGCCCCACTGAGTTCTGTGCAAACTTCAGTTGCTACTGCACAAGTTCCTCTTTCTTTGGCCACACCAGCTGGTTCAACTTTTGCTGAGTCTACTGTCAATAGTCTCCCCGTTGATTCTAAACGTGATCCAAGAAGGGATCCCCGCCGCCTTGATCCTCGTCGTGGAGGAGTATCTTCTGCTTCTAGTGTGGAAGAGGCAAGTTCAAATACATCTGATGTTGATGGCTCCATATCTTTGGGAAAATCTGCTTCGGTTCCAGTTCCTGTGACAATTGAGAATTCTTCGGTATCTCTTATATCAAAAACGAATGTTGAAGAAAAAATTATGGAGACTCAGTTTGTGTTTGGAACAGATCAATCAACCCCCAAATCCAGATCTCCTGATAGACCTGAGAAAGCCGACTCTATATTAGACATTAATGCCCCTCTGGATCCCATGCCTGCTACTGTCGAAAAAGCTGATGATGGTTTAGTTGCAGTTAACTTGTTTGATGACTTGGCAACTAAGAGGGATGATACATCGTCTTCTATAGAATACAATCAGTATTCTCCATCAGTTACAAATGCAGCTGCTTCTGAAGATACCTGTGAGGAGTTGCCTTTGCTTCCACCATACGTTGACTTGACTCCAGAACAGCAAACAACTGTAAGAAATTTGGCAGCTGAAAAGATATTTGATTCATGCAAGAATTTAAATGGGGCAGACTGTCATCAGATACGCTTGGCAATAATTGCTCGATTGGTTGCTCAGGTTGGTGCTGATGATGATATTGTTCGAATGTTGGAAAAGCAAGTTGCTGTCGACTACCAACAGCAAAAGGGACATGAGCTTGCTTTGCATGTCTTATATCACCTGCATTCACTTGATATTCTGGATTCAGTGGAAAGTTCTTCTTCTTTCGCTGTGTATGAGAAGTTTCTTCTAGTTGTGGCTAAATCGTTGCTAGATGCTTTTCCAGCTTCGGACAAATCTTTTAGTAGACTTCTTGGTGAAGTTCCAGTTTTGCCGGACTCTACCTTGGAACTATTACATAACCTTTGCTATTGTGATATTACTGACAACCAGGGGAAGGGTTCTCCTGATATTGAACGTGTCACACAAGGCCTTGGCACTGTTTGGAATTTGATTGTGAAGCGTCCATATAGTCGGCAAGCTTGCTTAGATATTGCTCTGAAGTGTGCTATGCATTCAGAAGTTAAGGTTCGAGCAACAGCTATTAGACTGGTGGCAAACAAACTCTACCGGTTAAGTTACATTTCAGATAGGATTGAGCAACATGCAACAAACATGTTCCTGTCTACAGTAGATGACATAGATCAGACAGATGTAGAGCCTTCGCCACGTGGATCAATTGAACAAAGAACTGCAGGAGAGGGTGAGAGTCAGGAAACATCCGTTGGTGGTTCTCAAGTGTCAGATCCCGGAACCTCAGAAAACGATTCAATGAAGAGTTCACAACCTACAGTACATGGCAGTTCAACTTTGTCACTTTCAGAAGCCGAAAGACATATTTCTCTTCTTTTTGCTCTATGCATGAAGAAACCTTGTCTGCTTCGGTTTGTATTTGATGCTTATGGACGGGCTCCTAGAGCAGTGAAAGAGGCCGTTCATGAACATATCCCTAATCTTATTACGGCCCTAGGGTCATCTGATTCTGACTTGCTTAGAATAATATCAGATCCACCTCCAGGAAGTGAACATCTGTTAGCATTGGTACTACAGGTACTAACTCAAGAGACGACGCCTTCTTCTGATCTGATTGCAACTGTTAAACATTTATATGAAACTAAACTGAAGGACGTGACGATTCTCATTCCAATGTTGTCCTCACTTTCCAAAAATGAGGTTTTACCTGTTTTTCCTCGGCTGGTTGATCTTCCATTAGAGAAGTTTCAGAGAGCATTGGCTTACATATTACAGGGTTCAGCACATACACGCCCAGCCTTAACACCCGTTGAAGTATTGATTGCCATCCACAACATAATTCCTGAAAAAGACGGCCTTCCATTAAAGAAGATAACGGATGCTTGTTCAGCTTGTTTCGAGCAACGTACAGTTTTCACTCAGCAGGTTTTAGCAAAAGCCTTGAGCCAGATGGTTGAACAAACTCCACTCCCTCTTCTCTTCATGAGAACTGTGATTCAGGCAATTGATGCTTTTCCTTCTCTGGTTGATTTCGTCATGGAGATACTTTCCAAACTTGTAAACAGACAGGTCTGGAGGATGCCAAAATTGTGGTTTGGTTTTTTGAAATGTGCATTTCAAACACAGCCTCATTCCTTTCGAGTACTATTACAGTTACCACCGCCACAACTTGAAAATGCTTTGAATAAATATGTTAACCTTAAAGGTCCTCTTGCTGCTTATGCCAGCCAGCCCAGCACGAAGTCTACTCTCTCTAGACCAATGCTCGTAGTTCTGGTAAAACAGCGAGCCTCCAGAACCTGGGAATCGACTAATCAGCTCTTTGGAGTAGGAGGCGATGTATCCTCCGACATGGTCATGGTCATGGTCTCGATTCGTCCGGTCTAG 3366 43.2 MGGPPLSYASQNKLYSNIVGVLKLLHFLAAIARKRPVHYGNILSALLEFVPSFETIRGRHAASIQYSIRSALLGFLRCMHPAFVESRDRLLKALRAINAGDAADQVIRQVDKMVKAADRASRDAWLGKDDQSSNQLNASVDLTRKRPRLLDDDDLPNGREASKQFRFGPDVHPISTSQKDGSLQNATSNGTSHDVPTLDVELTPAEQMIAMIGALLAEGERGAESLEILISNIHPDLLADIVITNMKNLPKASLPLSWHGDLPVTRQGCSHVQVLVPSAPLSSVQTSVATAQVPLSLATPAGSTFAESTVNSLPVDSKRDPRRDPRRLDPRRGGVSSASSVEEASSNTSDVDGSISLGKSASVPVPVTIENSSVSLISKTNVEEKIMETQFVFGTDQSTPKSRSPDRPEKADSILDINAPLDPMPATVEKADDGLVAVNLFDDLATKRDDTSSSIEYNQYSPSVTNAAASEDTCEELPLLPPYVDLTPEQQTTVRNLAAEKIFDSCKNLNGADCHQIRLAIIARLVAQVGADDDIVRMLEKQVAVDYQQQKGHELALHVLYHLHSLDILDSVESSSSFAVYEKFLLVVAKSLLDAFPASDKSFSRLLGEVPVLPDSTLELLHNLCYCDITDNQGKGSPDIERVTQGLGTVWNLIVKRPYSRQACLDIALKCAMHSEVKVRATAIRLVANKLYRLSYISDRIEQHATNMFLSTVDDIDQTDVEPSPRGSIEQRTAGEGESQETSVGGSQVSDPGTSENDSMKSSQPTVHGSSTLSLSEAERHISLLFALCMKKPCLLRFVFDAYGRAPRAVKEAVHEHIPNLITALGSSDSDLLRIISDPPPGSEHLLALVLQVLTQETTPSSDLIATVKHLYETKLKDVTILIPMLSSLSKNEVLPVFPRLVDLPLEKFQRALAYILQGSAHTRPALTPVEVLIAIHNIIPEKDGLPLKKITDACSACFEQRTVFTQQVLAKALSQMVEQTPLPLLFMRTVIQAIDAFPSLVDFVMEILSKLVNRQVWRMPKLWFGFLKCAFQTQPHSFRVLLQLPPPQLENALNKYVNLKGPLAAYASQPSTKSTLSRPMLVVLVKQRASRTWESTNQLFGVGGDVSSDMVMVMVSIRPV 1121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28268554 28284642 + CcPI632755_11g015400.1 Cco11g1540 192776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1540 1121 Pfam Symplekin tight junction protein C terminal 878 1056 IPR022075 -
Cco11g1540 1121 Pfam Symplekin/PTA1 N-terminal 21 98 IPR032460 -
Cco11g1540 1121 MobiDBLite consensus disorder prediction 716 772 - -
Cco11g1540 1121 Gene3D - 6 125 IPR011989 -
Cco11g1540 1121 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 25 1093 - -
Cco11g1540 1121 MobiDBLite consensus disorder prediction 144 160 - -
Cco11g1540 1121 MobiDBLite consensus disorder prediction 124 196 - -
Cco11g1540 1121 MobiDBLite consensus disorder prediction 338 356 - -
Cco11g1540 1121 MobiDBLite consensus disorder prediction 127 141 - -
Cco11g1540 1121 MobiDBLite consensus disorder prediction 175 196 - -
Cco11g1540 1121 MobiDBLite consensus disorder prediction 316 331 - -
Cco11g1540 1121 MobiDBLite consensus disorder prediction 306 359 - -
Cco11g1540 1121 MobiDBLite consensus disorder prediction 733 772 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1540 K06100 - - csv:101202828 1831.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0887 Cco-Chr4:24485457 Cco11g1540 Cco-Chr11:28268554 1.10E-175 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g566 . . . . . . . . . . . Cma09g00609 . . . Cpe06g00470 . . . . . . . . . . . . . . . Cone4ag1271 . . . Lsi04g02305 Csa03g04524 . . . . . . . . . . . . Cmo09g00597 . . . Car09g00540 . Cpe02g00494 Bhi09g02542 Tan01g3889 . . . . . Cla11g01454 Cam11g1507 Cec11g1545 Cco11g1540 Clacu11g1672 Cmu11g1488 Cre11g1908 . . . .