Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1542 ATGTCGTCTCTACATTTCCTCTGCTTTTTCTCTCTAATTTCCATCGCCTTTCTCCCTGGAATCAAATCTGACGACGAACGTCAAATCCTAACCAAACTCAAATCCTCACTCCAAAATTCAAACGCCAATGTCTTCCACAACTGGGGATTTCAAAATCCCATCTGCAATTTCACCGGAATCGCTTGTAATTCAGATGGGTTTGTTAAGGAAATTGACCTATCCAAACGGGGTTTATCTGGGATTGTTCCGTTTGATTCCGTTTGCCAATTGCAAGCCTTGGAGAAGTTGGCTCTTCGGTCTAATTCCCTGCATGGTGAAATCACAGAGGGTTTGAATAATTGTGTGAAATTGAAGTATTTGGATCTCAGCAGCAATTCCTTCTCTGGTTCTTTTCCCAACATACATTCTTTGAGTGAATTGGAGTATTTGTATTTGAATGTAAGTGGAATTTCAGGGAAGTTTCCATGGAAATCAGTTGGGAATTTGAGTGGTTTGATTGAGTTGAGTGTTGGGGATAACGCTTTTGAAAACACTACGTTTCCTGTGGAGGTTACTAATTTGAAGAAGCTTAATTGGCTTTACTTGTCAAACTGCAGCTTAACAGGGGAAATTCCAAGGTCTATAGGTAATCTCACACAGCTTCTTAATTTGGAATTTTCGGATAATTATATAACAGGGACTATTCCGCCGGAGATTGCCAACCTGCAGAAGCTATGGCAGTTGGAATTCTACGGTAATCAATTAACGGGGACACTTCCAGTGGGATTAAGAAATCTAACCGGGCTTAAGAATTTTGATGCTTCCTTGAATCAAATTCATGGGGATTTATCAGAGTTGAGGTTTTTGACGAACCTGGTTTCTCTGCAAATGTTTGAAAATCAAATCTCCGGCGAAATTCCGGTGGAGTTTGGTGAATTCAAGTCGCTGGTGAATCTCTCCCTTTACAAGAACAAGCTTACAGGGCCTCTTCCGCAATCGATTGGTTCTTGGACGGAGTTTGATTTTATTGATGTATCTGAAAATTTCTTGACAGGGCCCATTCCTCCCGATATGTGCAAGAAGGGGACGATGCAGAAGCTTCTCATTCTTCAGAACAATTTTACTGGTGAAATTCCGGCTACCTACGCTAATTGCTCGACTTTAACCCGATTTAGAGTCAGTCAGAACTCACTCACCGGAGTCGTTCCGTCTGGAATTTGGGGATTACCGAACGTGAATATAATTGATCTCGCCTCGAATCAGTTGGAAGGTTCAATCACTCCCAACATTGGAAAGGCTGTGGCTCTCTCGGAATTATACATCGGAAATAATCGATTCTCAGGTCGACTGCCAACGGAGATTTCGCAAGCAAAATCTCTCGCTTCGGTTGACCTGAGCAATAATCAATTCACCGATGAACTTCCGATGACTATCGGCGACCTGAAGAATCTCGATAGCTTCGAATTGCAGGGGAATAAATTCTCCGGTTCGATTCCAGAGACGATCGGCTTGTGTAATTCCTTGAGCATCATCAATCTGGCGGATAATTTCTTCTCTGGACAAATCCCTTCGTCGCTAGGGTTTCTTCCAGTTCTAAACTCTTTGAATCTCTCCAATAACGGCCTATCGGGTGAAATCCCTTCGACGTTTTCGCATCTGAAATTGAGTTTTCTCGATCTTTCCAACAATCAATTAACCGGTCCAGTACCTCAAGCGCTCTCGAATGGAGCTTACAAAGAAAGCTTCGCCGGAAACCCTGGCCTCTGCAGTGAGGCCGATGACTTTATACGGCGATGTTCACAGAGTTCCGGCGCGTCGAAGGACGTCAAAACACTTGTCATCTGTTTCGCCGTCGGATTAATCCTTCTCAGTGTGACGCTGTGGTGCTTCATAACCTTGAAAAAGAGCAGAAAAGATCGAGATCGATCGCTTAAAGAAGAATCGTGGGACCTAAAATCGTTCCAAGTAATGACGTTCACAGAGGACGAGATACTCGATTCCATTAAAGACGAGAATCTAATCGGAAAAGGAGGTTCCGGCAACGTTTACAAAGTGACAGTCGGAAACGGGAAAGAATTCGCCGTGAAGCACATTTGGAACACTAATCCGTACGAAGGGAAGAAGAAGAATTACCGTAGTTCATCGCCGATTCTGGTGAAACAGAGAACGAAGTCATCGGAATTTGAGTCGGAAGTGAAGACTCTAAGCTCGATCCGCCACGTGAACGTGGTGAAGCTGTACTGCAGCATCACGAGCGAGGTTTCAAGCCTGTTGGTGTACGAATACATGCCGAATGGAAGCTTATGGGACAGACTTCACACGTCGAGAAAAATGGAGTTGGATTGGGAAACAAGATACGAAATCGCCGTGGGAGCGGCGAAGGGACTGGAGTATCTTCATCACGGTTGTGACCGGCCGGTGATCCACCGGGATGTTAAGTCGAGTAACATACTTTTGGATGAATTTCTGAAGCCGAGAATCGCGGATTTTGGGCTTGCCAAAATTCTTCACACAACTGGGTTCAACGAGACCACCCATGTCATTGCCGGCACCCCGGGCTACATCGCACCAGAGTATGGATACACTTACAAAGTCGATGAGAAGAGCGACGTGTACAGTTTTGGAGTGGTATTGATGGAGTTAGTGAGTGGGAAAAAGGCAATAGAGGCCGAGTTTGGAGAGAACAAGGAGATTGTACAATGGATATCAAACAATTTGAAGACAAGAGAAAGTGTATTAAGCTTGGTAGATTCAAGAATTCCAGATGTATTTAAAGAGGATGCAATAAAGGTATTAAGAATTGCAATTTTGTGCACCGCAAGACTTCCCACTTTGAGACCCACAATGAGAAGTGTCGTTCAAATGCTCGAAGAAGCTCAACCTTGTCGCTTGCTTGGGATTCTCATTACCAAAGATGGCGGGACTGTTAAAAAGGAATTATCTTTGAATGTCAATAAAATTAGTCTCTAA 2949 43.88 MSSLHFLCFFSLISIAFLPGIKSDDERQILTKLKSSLQNSNANVFHNWGFQNPICNFTGIACNSDGFVKEIDLSKRGLSGIVPFDSVCQLQALEKLALRSNSLHGEITEGLNNCVKLKYLDLSSNSFSGSFPNIHSLSELEYLYLNVSGISGKFPWKSVGNLSGLIELSVGDNAFENTTFPVEVTNLKKLNWLYLSNCSLTGEIPRSIGNLTQLLNLEFSDNYITGTIPPEIANLQKLWQLEFYGNQLTGTLPVGLRNLTGLKNFDASLNQIHGDLSELRFLTNLVSLQMFENQISGEIPVEFGEFKSLVNLSLYKNKLTGPLPQSIGSWTEFDFIDVSENFLTGPIPPDMCKKGTMQKLLILQNNFTGEIPATYANCSTLTRFRVSQNSLTGVVPSGIWGLPNVNIIDLASNQLEGSITPNIGKAVALSELYIGNNRFSGRLPTEISQAKSLASVDLSNNQFTDELPMTIGDLKNLDSFELQGNKFSGSIPETIGLCNSLSIINLADNFFSGQIPSSLGFLPVLNSLNLSNNGLSGEIPSTFSHLKLSFLDLSNNQLTGPVPQALSNGAYKESFAGNPGLCSEADDFIRRCSQSSGASKDVKTLVICFAVGLILLSVTLWCFITLKKSRKDRDRSLKEESWDLKSFQVMTFTEDEILDSIKDENLIGKGGSGNVYKVTVGNGKEFAVKHIWNTNPYEGKKKNYRSSSPILVKQRTKSSEFESEVKTLSSIRHVNVVKLYCSITSEVSSLLVYEYMPNGSLWDRLHTSRKMELDWETRYEIAVGAAKGLEYLHHGCDRPVIHRDVKSSNILLDEFLKPRIADFGLAKILHTTGFNETTHVIAGTPGYIAPEYGYTYKVDEKSDVYSFGVVLMELVSGKKAIEAEFGENKEIVQWISNNLKTRESVLSLVDSRIPDVFKEDAIKVLRIAILCTARLPTLRPTMRSVVQMLEEAQPCRLLGILITKDGGTVKKELSLNVNKISL 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28315101 28318748 + CcPI632755_11g015420.1 Cco11g1542 192778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1542 982 SUPERFAMILY Protein kinase-like (PK-like) 652 950 IPR011009 -
Cco11g1542 982 ProSitePatterns Protein kinases ATP-binding region signature. 667 689 IPR017441 GO:0005524(InterPro)
Cco11g1542 982 SMART serkin_6 661 949 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1542 982 FunFam Receptor-like protein kinase HAIKU2 644 755 - -
Cco11g1542 982 FunFam Leucine-rich receptor-like protein kinase family protein 183 278 - -
Cco11g1542 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1542 982 Gene3D Ribonuclease Inhibitor 23 179 IPR032675 -
Cco11g1542 982 Gene3D Ribonuclease Inhibitor 180 279 IPR032675 -
Cco11g1542 982 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 952 IPR050647 -
Cco11g1542 982 ProSiteProfiles Leucine-rich repeat profile. 116 138 IPR001611 GO:0005515(InterPro)
Cco11g1542 982 Gene3D Transferase(Phosphotransferase) domain 1 756 956 - -
Cco11g1542 982 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cco11g1542 982 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 756 959 - -
Cco11g1542 982 FunFam Probable inactive receptor kinase RLK902 23 182 - -
Cco11g1542 982 Gene3D Ribonuclease Inhibitor 352 600 IPR032675 -
Cco11g1542 982 Gene3D Phosphorylase Kinase; domain 1 631 755 - -
Cco11g1542 982 Pfam Leucine Rich Repeat 116 133 IPR001611 GO:0005515(InterPro)
Cco11g1542 982 Pfam Leucine Rich Repeat 189 211 IPR001611 GO:0005515(InterPro)
Cco11g1542 982 Pfam Leucine Rich Repeat 500 522 IPR001611 GO:0005515(InterPro)
Cco11g1542 982 Pfam Leucine Rich Repeat 547 568 IPR001611 GO:0005515(InterPro)
Cco11g1542 982 Pfam Leucine Rich Repeat 525 546 IPR001611 GO:0005515(InterPro)
Cco11g1542 982 Pfam Leucine Rich Repeat 214 235 IPR001611 GO:0005515(InterPro)
Cco11g1542 982 Pfam Leucine Rich Repeat 452 474 IPR001611 GO:0005515(InterPro)
Cco11g1542 982 Pfam Protein kinase domain 663 947 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1542 982 FunFam Receptor-like protein kinase HSL1 284 591 - -
Cco11g1542 982 ProSiteProfiles Protein kinase domain profile. 661 956 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1542 982 SUPERFAMILY L domain-like 24 349 - -
Cco11g1542 982 Gene3D Ribonuclease Inhibitor 280 351 IPR032675 -
Cco11g1542 982 SUPERFAMILY RNI-like 311 568 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0760 Cco-Chr10:11967358 Cco11g1542 Cco-Chr11:28315101 2.00E-73 dispersed
Cco10g0762 Cco-Chr10:12065143 Cco11g1542 Cco-Chr11:28315101 1.10E-74 dispersed
Cco11g1542 Cco-Chr11:28315101 Cco04g2113 Cco-Chr4:35000119 3.10E-82 dispersed
Cco11g1542 Cco-Chr11:28315101 Cco11g1543 Cco-Chr11:28333246 1.20E-94 tandem
Cco02g0799 Cco-Chr2:8793933 Cco11g1542 Cco-Chr11:28315101 5.50E-164 transposed
Cco11g1542 Cco-Chr11:28315101 Cco04g1559 Cco-Chr4:30948394 1.10E-60 wgd
Cco11g1542 Cco-Chr11:28315101 Cco08g1352 Cco-Chr8:25436011 1.10E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87254 PF00069 Pkinase 2.00E-43 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1542 - - - 0.0