Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1543 ATGCCTCTCCCTTTCTACTTCTTCTTTCTTCAACCTTTCCTTTCTCTTGCCATTGGAACTGACCAGTTTCAATTTTTCTCTTTCATGCAAAAGGGTGTCATCGGGAATTCTCTCCCCTCCGATTGGACTGGAAATTCCTTCTGTAATTTCACCGGAGTTAGCTGTAACCAAAAGGGGTTAGTGGTCGGAATTGATCTCTCTGGAAGGGCGGTTTCCGGGAGGTTTCCGGCGGATGTTTGTTCTTATTTGCCGGAGTTGAGACTGCTGCGGCTTGGACGGAGTGGCTTACGTGGAACCTTTCCACGTGGGATAACCAATTGCTCTGTTTTGGAAGAATTGGATATGAGTTTTCTGTCTCTGACGGGGACGTTACCGGATTTCTCGCCGTTGAAAACCTTGAGGATTCTCGACATGTCGTACAATAATTTCACCGGTGAATTCCCGTTGTCGGTTTTCAGTTTAACCAATCTCGAGAGGTTGAATTTCAACGAGGACAACAATTTCAATACGTGGCAGTTGCCGGAGAATGTGTCTGGCTTGACGAAGTTGAAATCCATGGTGTTAACGACTTGTATGCTGGAGGGTCGAATTCCGGCGACGATTGGGAATATGACGGCGCTCGTTGACCTTGAATTAAGCGGCAATTTCCTCACCGGAAAAATCCCAAGAGAAATCGGGAATTTGAAGAATTTGAGACAGTTGGAGCTTTATTACAATTCATTAGTCGGAGAAATTCCAGAGGAACTTGGGAATTTAACAGAGCTCGTGGACTTGGACATGTCGGTCAACAAGTTGACTGGGAAACTTCCAGAGTCGATTTGTCGTCTTCCTAAGCTTGAAGTTCTTCAATTTTACAACAACTCATTAACAGGGGAGATTCCAATTTCAATTTCAAATTCAACGACACTCACTATGTTATCCCTTTACGACAACTACATGACGGGACAAGTTCCAAGTAATTTGGGTCAATTCTCTCCCATGGTGGTTCTCGACTTGTCGGAAAATTATTTCTCCGGTCCTTTACCGACAGATGTCTGTGGAGAAGGTAAATTAATGTATTTCCTTGTGTTGGAAAATAAATTTTCCGGTCAAATCCCACCGTCGTACGGTAAATGCCAATCCCTTTTACGGTTTCGAGTCAGTTCGAATATTTTGGAAGGTCCGGTGCCGGTGGGACTTTTGAGTCTTCCTCATGTTTCGATTATTGATTTCGGTAACAATAATTTGAGTGGCGAAATTCCCAATTCTTTTGTTAAAGCGAGGAATCTTTCGGAATTGTTTATGGAGAGTAATAGAATTTCCGGCGTCTTGCCGCCGGAAATTTCTAAAGCTACCAATTTAGTTAAGATTGATCTTAGCAACAATCTCTTGTCTGGTCCAATTCCTTCCGAAATTGGGAATCTCAGAAAGCTTAATTTGTTGCTTTTGCAAGGAAATCACTTGAATTCTTCAATACCCACCTCGCTTTCTGAGCTTAAATCTCTTAATGTTCTTGATTTATCCGATAATCGATTAACGGGTAACATCCCAGAAAGTCTCTGTGAATTGCTACCGAATTCAATCAATTTCTCAAACAATCAACTCTCTGGTCCAATTCCTCTGTCTTTAATCAAAGGTGGATTAGTGGAAAGCTTTTCCGGCAACCCTGGACTTTGCGTTTCGGTTTATTTAGATTCATCAGATCAGAAATTCCCAATTTGTTCTCAAAATTACAACAAAAAGCGATTGGATTCCATCTGGGCAATCGGAATATCGGCGTTCATAATCTTCATCGGAGCTGCTCTGTATTTAAGACGACGATTCAGCAGAGAAAAATCGATAATGGAACAAGACGAAACACTATCTTCATCGTTCTTCTCATACGATGTGAAAAGTTTCCATCGAATCAGCTTCGACCCAAGAGAGATAATCGAATCAATGGTGGATAAGAACATCGTCGGCCATGGCGGCTCCGGTACGGTGTACAAAATAGAGTTAAGCAGTGGGGAAATCGTAGCCGTTAAAAGGCTGTGGAGTCGGAAGGGGAAAGATACGACGTCGGATCAAGAACAGCTGTATTTGGACAAAGAACTGAAAACAGAGGTGGAAACATTAGGGAGTATAAGGCATAAAAACATAGTGAAATTGTATTGCTATTTCTCAAGCTTGGATTGCAGTTTATTGGTTTATGAGTATATGCCAAATGGGAATTTATGGGATGCTTTGCATAAGGGTTGGATTCATTTGGATTGGCCAACTAGACATCAAATTGCTTTGGGTATAGCCCAAGGCTTGGCTTACCTTCATCATGATTTATTGCCTTCTATAATCCATAGAGACATTAAAACCACTAATATTCTCTTAGATGTCAATTATCATCCCAAAGTTGCAGATTTTGGTATTGCTAAGGTTTTGCAAGCTAGAACGGGCAAGGATTCTACCACCACCGTCATCGCCGGTACTTACGGCTATCTCGCTCCAGAGTATGCATATTCGTCAAAAGCTACGACAAAGTGCGACGTGTACAGCTTTGGAATCGTGCTAATGGAGCTAATAACAGGAAAGAAACCGGTGGAGGCAGAGTTTGGGGAGAACAAGAACATCATATATTGGGTTTCAAACAAAGTAGACACAAAGGAAGGAGCAATGGAAGTATTAGACAAAAGAGTTTCAGGGTCATTCAAAGATGAGATGATTGAAGTTCTAAGGATTGCAATTCGTTGTACGTACAAGAATCCAGCCCTTAGACCCACCATGAAGGAAGTGGTTCAACTATTGATTGAAGCAGACCCTTGCAAATTCGATTCTCACAACAAATGCCCCAAACACACCACCACCAAAATCAACAACCCATTTGACCTATGA 2844 41.98 MPLPFYFFFLQPFLSLAIGTDQFQFFSFMQKGVIGNSLPSDWTGNSFCNFTGVSCNQKGLVVGIDLSGRAVSGRFPADVCSYLPELRLLRLGRSGLRGTFPRGITNCSVLEELDMSFLSLTGTLPDFSPLKTLRILDMSYNNFTGEFPLSVFSLTNLERLNFNEDNNFNTWQLPENVSGLTKLKSMVLTTCMLEGRIPATIGNMTALVDLELSGNFLTGKIPREIGNLKNLRQLELYYNSLVGEIPEELGNLTELVDLDMSVNKLTGKLPESICRLPKLEVLQFYNNSLTGEIPISISNSTTLTMLSLYDNYMTGQVPSNLGQFSPMVVLDLSENYFSGPLPTDVCGEGKLMYFLVLENKFSGQIPPSYGKCQSLLRFRVSSNILEGPVPVGLLSLPHVSIIDFGNNNLSGEIPNSFVKARNLSELFMESNRISGVLPPEISKATNLVKIDLSNNLLSGPIPSEIGNLRKLNLLLLQGNHLNSSIPTSLSELKSLNVLDLSDNRLTGNIPESLCELLPNSINFSNNQLSGPIPLSLIKGGLVESFSGNPGLCVSVYLDSSDQKFPICSQNYNKKRLDSIWAIGISAFIIFIGAALYLRRRFSREKSIMEQDETLSSSFFSYDVKSFHRISFDPREIIESMVDKNIVGHGGSGTVYKIELSSGEIVAVKRLWSRKGKDTTSDQEQLYLDKELKTEVETLGSIRHKNIVKLYCYFSSLDCSLLVYEYMPNGNLWDALHKGWIHLDWPTRHQIALGIAQGLAYLHHDLLPSIIHRDIKTTNILLDVNYHPKVADFGIAKVLQARTGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAMEVLDKRVSGSFKDEMIEVLRIAIRCTYKNPALRPTMKEVVQLLIEADPCKFDSHNKCPKHTTTKINNPFDL 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28333246 28336587 + CcPI632755_11g015430.1 Cco11g1543 192779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1543 947 FunFam Leucine-rich repeat receptor-like protein kinase 170 272 - -
Cco11g1543 947 SMART serkin_6 640 926 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1543 947 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 38 920 IPR050647 -
Cco11g1543 947 Pfam Leucine Rich Repeat 446 468 IPR001611 GO:0005515(InterPro)
Cco11g1543 947 Pfam Leucine Rich Repeat 278 299 IPR001611 GO:0005515(InterPro)
Cco11g1543 947 Pfam Leucine Rich Repeat 422 443 IPR001611 GO:0005515(InterPro)
Cco11g1543 947 Pfam Leucine Rich Repeat 133 153 IPR001611 GO:0005515(InterPro)
Cco11g1543 947 Pfam Leucine Rich Repeat 255 276 IPR001611 GO:0005515(InterPro)
Cco11g1543 947 Pfam Leucine Rich Repeat 494 516 IPR001611 GO:0005515(InterPro)
Cco11g1543 947 Pfam Leucine Rich Repeat 207 228 IPR001611 GO:0005515(InterPro)
Cco11g1543 947 Pfam Leucine Rich Repeat 230 252 IPR001611 GO:0005515(InterPro)
Cco11g1543 947 Gene3D Ribonuclease Inhibitor 24 167 IPR032675 -
Cco11g1543 947 Gene3D Phosphorylase Kinase; domain 1 623 725 - -
Cco11g1543 947 SMART LRR_typ_2 276 300 IPR003591 -
Cco11g1543 947 SMART LRR_typ_2 130 154 IPR003591 -
Cco11g1543 947 SMART LRR_typ_2 492 516 IPR003591 -
Cco11g1543 947 SMART LRR_typ_2 228 252 IPR003591 -
Cco11g1543 947 ProSiteProfiles Leucine-rich repeat profile. 494 516 IPR001611 GO:0005515(InterPro)
Cco11g1543 947 SUPERFAMILY RNI-like 64 340 - -
Cco11g1543 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1543 947 Gene3D Ribonuclease Inhibitor 168 272 IPR032675 -
Cco11g1543 947 FunFam receptor protein-tyrosine kinase CEPR1 623 725 - -
Cco11g1543 947 Gene3D Transferase(Phosphotransferase) domain 1 726 938 - -
Cco11g1543 947 Gene3D Ribonuclease Inhibitor 286 562 IPR032675 -
Cco11g1543 947 FunFam Receptor protein-tyrosine kinase CEPR1 276 561 - -
Cco11g1543 947 SUPERFAMILY Protein kinase-like (PK-like) 627 919 IPR011009 -
Cco11g1543 947 ProSitePatterns Protein kinases ATP-binding region signature. 646 668 IPR017441 GO:0005524(InterPro)
Cco11g1543 947 SUPERFAMILY L domain-like 245 561 - -
Cco11g1543 947 Pfam Protein kinase domain 643 917 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1543 947 ProSiteProfiles Protein kinase domain profile. 640 920 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1543 947 FunFam leucine-rich repeat receptor-like protein kinase TDR 726 931 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0799 Cco-Chr2:8793933 Cco11g1543 Cco-Chr11:28333246 6.00E-86 dispersed
Cco08g1011 Cco-Chr8:21915708 Cco11g1543 Cco-Chr11:28333246 2.10E-75 dispersed
Cco08g1352 Cco-Chr8:25436011 Cco11g1543 Cco-Chr11:28333246 5.20E-180 dispersed
Cco11g1543 Cco-Chr11:28333246 Cco03g1670 Cco-Chr3:31338810 2.40E-68 dispersed
Cco11g1542 Cco-Chr11:28315101 Cco11g1543 Cco-Chr11:28333246 1.20E-94 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87255 PF00069 Pkinase 1.40E-48 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1543 - - - 0.0