Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1546 ATGTCTGCTCCATTGACTCCCTCAAAGAGATCACGTGATCGAAGCTTTGTCAAGTCTAATGGGAAAGGAAAGTGGCAAAAGTCATCAGGTTCTCGTTCGCAAAATCAATCCTTGAAATTGTCTCCTGGCTATGCTGTCTTTCGTGTGCTCTTTCCTGTTTCCAGAATTGGCAGCCTTGTAGGTAAAGATGGGGACGCTTTATCTAAAATTCGGGAAGAAACAGGTGTAGAAATCAGAGTAGAGGACGCTGTTCCTGGATCTGATGAGAGAATAGTAGTAATTGGAGGCTCTAATCAAGAAACTGAAGTGAACACTGAGCAGAAGAGTAAGGAAGACAACAAAAATTCTGAAGTCGAGGAGAATGATGATGATATTGCCAAGTCGAAAAAGAAGGAAGATAAAGATTCTCCTCCTGTGGAAGATGCTAAACAGAAGGAGGTTTCTCATTTGCGAAAAGCCCTCTTTCTTGTTTCTGAGAAAATCTTTGATGAAGAACCGGAGGCAGATGGGACAGATGTCGAAGGTGATAAGACATTTGTCTTAAGATTGCTTGTTCTTTCTAGTCAAGTTGGGTGCCTATTGGGAAAGGGTGGCAGTGTAGTCAAACAAATGTCATCTGATAGTGGAGCGCAAATTAGAATTCTTCCCAGGGATAAACTTCCTCCGCTTGCAACGACTAATAATGAGCTAGTCCAGATTAGTGGAGGAATTGATGTGGTGAAGAAAGCTCTTGAACTTGTTTTTCAGCAGCTAATGGAAAATTCACCCAATGATAAAGATCCTGTTGCCTTAAGCAATGCTGCACAGTCATCACATTCTTTTGGACTGTCTCTCTCTAGGGCTCATGAATCTCCTCTGGGTAGTAGTTCTTTTAATACTCATGGAGGCCCTTACTCTGTGCCTCGTGATGTTGGCAATTCTCATTTCAGTGCACCTTCTCTTGCTCCTAAACAGTATGAAAGCAGCATTCCTGGTCGAAGCAAACCTTCTCATGAAATTTTGAGTTATCGTTTATTATGCCCATCTGAGAGAGTTGGAAATGTGATTGGAAAAGGAGGAGCAGTAGTTAAGACTCTTCAGCAAGACACGGGCTGTGACATCAAAGTTGTTGAAGGTGCCTTGGACTCAGAAGACCGGATTATACTTGTAGCTGGTCCTGCGCATCCAGACGACAGAATATCACCAGTGCAAGACGCTGTTTTTCGTGTTCAGGCCAGGATTGTCAAAGCTGTACCAGAGGGCAAGGAGCAGAACTTGGTAGCTAGGTTTCTTGTTTCCTCCAATCAAATTGGTTGTCTTCTTGGGAAGGGTGGCTCCATCATAGCTGAAATGAGAAAGTCGACTGGTGCATATATTCGTATTTTAGGAAAGGAACAGATTCCAAAGTGTGCTGGGGAGGATGAAGAAGTGGTTCAGATAAATGGAGAGCCTGAAACAGTTCAAGATGCCATGTTGCAGATTACTACTCGGCTGAGGCATCATTTTTTCCGTGATGCATTTCCATCAGTTAATAGTCATCCGAATCCTGCATTCATAGATAGACTTCCTTCATTTCCTTCATATTTTGGAAGGAGAGAATTATCACCTCCAGGAATTTATTCAAGTTTAGGCCCCTCATTTCACAAGTTTGATGCTCTTAGTGGCATTCCTTCACTTAGTGATTTGCGGGATGATCGACCTCCTTTTCTTCATAGGTCAGGTGCTCCTCTGTTATCTGATAGAAAGCCATGGAACTCTCAGGGATTAGTTGAAGGTGGTGTTGGCTTGTCAGATTTTGCAGGAGCCCATCATAGAAGACTTGCTGGATTTGGAGGAGGAAATAATCCAGCTATTATTACGAGCACCACTGTTGAAGTAGTTGTTCCTCGGAACCTTGTCCCTGTCATTTGTGGAGAAAATGGTGAATGTTTGAAACAGATTCGACAGATTTCTGATGCAAAAATTACAATTACCGAGCCAAAGCAAGGAGAAGTGGAAACTATGATTATAATTTCTGGAACGCCTGAGCAGACCCATGCTGCCCAGAGTCTTATTCAAGCTTTTGTATACGACGACTACTTTCTTATCTCTGGGCTGATTGTTTTGGAGAAAGGATGTTGA 2100 42.76 MSAPLTPSKRSRDRSFVKSNGKGKWQKSSGSRSQNQSLKLSPGYAVFRVLFPVSRIGSLVGKDGDALSKIREETGVEIRVEDAVPGSDERIVVIGGSNQETEVNTEQKSKEDNKNSEVEENDDDIAKSKKKEDKDSPPVEDAKQKEVSHLRKALFLVSEKIFDEEPEADGTDVEGDKTFVLRLLVLSSQVGCLLGKGGSVVKQMSSDSGAQIRILPRDKLPPLATTNNELVQISGGIDVVKKALELVFQQLMENSPNDKDPVALSNAAQSSHSFGLSLSRAHESPLGSSSFNTHGGPYSVPRDVGNSHFSAPSLAPKQYESSIPGRSKPSHEILSYRLLCPSERVGNVIGKGGAVVKTLQQDTGCDIKVVEGALDSEDRIILVAGPAHPDDRISPVQDAVFRVQARIVKAVPEGKEQNLVARFLVSSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQIPKCAGEDEEVVQINGEPETVQDAMLQITTRLRHHFFRDAFPSVNSHPNPAFIDRLPSFPSYFGRRELSPPGIYSSLGPSFHKFDALSGIPSLSDLRDDRPPFLHRSGAPLLSDRKPWNSQGLVEGGVGLSDFAGAHHRRLAGFGGGNNPAIITSTTVEVVVPRNLVPVICGENGECLKQIRQISDAKITITEPKQGEVETMIIISGTPEQTHAAQSLIQAFVYDDYFLISGLIVLEKGC 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28370826 28375258 - CcPI632755_11g015460.1 Cco11g1546 192782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1546 699 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 607 682 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Cco11g1546 699 MobiDBLite consensus disorder prediction 285 326 - -
Cco11g1546 699 ProSiteProfiles Type-1 KH domain profile. 178 247 - -
Cco11g1546 699 Gene3D K Homology domain, type 1 415 495 IPR036612 GO:0003723(InterPro)
Cco11g1546 699 Gene3D K Homology domain, type 1 176 255 IPR036612 GO:0003723(InterPro)
Cco11g1546 699 ProSiteProfiles Type-1 KH domain profile. 418 487 - -
Cco11g1546 699 MobiDBLite consensus disorder prediction 89 146 - -
Cco11g1546 699 MobiDBLite consensus disorder prediction 1 38 - -
Cco11g1546 699 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 335 410 IPR036612 GO:0003723(InterPro)
Cco11g1546 699 CDD KH-I_PEPPER_rpt1_like 336 401 - -
Cco11g1546 699 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 414 498 IPR036612 GO:0003723(InterPro)
Cco11g1546 699 ProSiteProfiles Type-1 KH domain profile. 44 110 - -
Cco11g1546 699 CDD KH-I_PEPPER_rpt2_like 180 251 - -
Cco11g1546 699 ProSiteProfiles Type-1 KH domain profile. 614 678 - -
Cco11g1546 699 ProSiteProfiles Type-1 KH domain profile. 333 400 - -
Cco11g1546 699 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 171 253 IPR036612 GO:0003723(InterPro)
Cco11g1546 699 MobiDBLite consensus disorder prediction 104 146 - -
Cco11g1546 699 Pfam KH domain 181 247 IPR004088 GO:0003723(InterPro)
Cco11g1546 699 Pfam KH domain 47 100 IPR004088 GO:0003723(InterPro)
Cco11g1546 699 Pfam KH domain 336 387 IPR004088 GO:0003723(InterPro)
Cco11g1546 699 Pfam KH domain 616 679 IPR004088 GO:0003723(InterPro)
Cco11g1546 699 Pfam KH domain 421 487 IPR004088 GO:0003723(InterPro)
Cco11g1546 699 SMART kh_6 613 683 IPR004087 GO:0003676(InterPro)
Cco11g1546 699 SMART kh_6 332 412 IPR004087 GO:0003676(InterPro)
Cco11g1546 699 SMART kh_6 177 252 IPR004087 GO:0003676(InterPro)
Cco11g1546 699 SMART kh_6 43 113 IPR004087 GO:0003676(InterPro)
Cco11g1546 699 SMART kh_6 417 492 IPR004087 GO:0003676(InterPro)
Cco11g1546 699 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 611 684 IPR036612 GO:0003723(InterPro)
Cco11g1546 699 CDD KH-I_PEPPER_rpt2_like 420 492 - -
Cco11g1546 699 Gene3D K Homology domain, type 1 612 687 IPR036612 GO:0003723(InterPro)
Cco11g1546 699 Gene3D K Homology domain, type 1 45 107 IPR036612 GO:0003723(InterPro)
Cco11g1546 699 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 40 99 IPR036612 GO:0003723(InterPro)
Cco11g1546 699 Gene3D K Homology domain, type 1 333 412 IPR036612 GO:0003723(InterPro)
Cco11g1546 699 MobiDBLite consensus disorder prediction 21 38 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1546 K21444 - - csv:101221201 1217.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1802 Cco-Chr9:30924051 Cco11g1546 Cco-Chr11:28370826 2.50E-80 dispersed
Cco09g2017 Cco-Chr9:34382220 Cco11g1546 Cco-Chr11:28370826 3.10E-64 dispersed
Cco11g1210 Cco-Chr11:23933888 Cco11g1546 Cco-Chr11:28370826 4.00E-27 dispersed
Cco11g1546 Cco-Chr11:28370826 Cco02g1804 Cco-Chr2:30872420 2.50E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35