Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1554 | ATGGCGATCGCTGCAGAGAACCAGCCCCAGGAGAAGATTACCACTACGGAGGCCTCTGCTGTCGAAAAGAGGAGATGGACGCTTAACGACTTTGACATTGGGAAGCCTCTCGGAAGAGGGAAGTTTGGTCATGTCTATCTGGCTAGAGAAAAGAGGAGTAATCACATTGTGGCTCTGAAAGTTCTATTCAAGAGCCAGTTACAACAGTCGCAGGTTGAGCACCAGCTTCGTCGGGAAGTTGAAATACAGAGTCATCTTAGACACTCCAACATTCTGCGCCTTTATGGATATTTCTACGATCAAAAAAGGATTTATTTGGTATTGGAATATGCGCCCAGAGGTGAGCTTTACAAGGAACTACAGAAGTGCAAGTACTTCAGTGAGAGACGCGCTGCTACTTACGTCGCGTCATTGGCTCGGGCACTCATATACTGTCATGGAAAACATGTAATACACAGAGACATCAAACCAGAAAATCTTCTAATTGGTGCCCAGGGTGAACTCAAGATAGCTGACTTTGGATGGTCAGTGCACACGTTCAACCGTAGGCGGACTATGTGTGGAACACTGGATTATCTGCCTCCTGAAATGGTGGAGAGTGTGGAACACGATGCAAGTGTGGATATCTGGAGCCTTGGTGTACTGTGCTATGAGTTTCTCTATGGGGTACCTCCATTTGAGGCTAAGGAACACTCTGACACATACAGGAGAATCGTGCAAGTAGATTTGAAGTTTCCTCCAAGACCAATCATTTCTTCAACTGCAAAGGATCTTATCAGTCAGATGCTTGTCAAGGATTGCTCTCAACGTGACTGTGTTCTTGAAACAGCTTTCACCTACTATGGATTTAACCTTTTATTTTGTGGATCTAACGACTTATGTGAGCTTAATCGGTTCAAGGAGAAGAGGAAGATGTCGTGGCAACCGTATGTTGATGAGCACTTGATGTGCGACATTGGAGGCAATCGTCTCTCTGCTGCTGCGATCATTGGCCAAGACGGCACTGTTTGGGCTCAGACCCCCAACTTTCCTCAGTTGAAGCCAGAAGAGTTAACAGCCATTATGAATGATTTTGAGCAACCTGGATCACTTGCCCCAGCTGGTTTGTTCCATGGTGGGACTAAGTACATGGTTATTCAAGGTGAACCCGGTGCTGTCATAAGAGGAAAAAAGGGTGGTGGCGGGATTACTATTAAGAAGACTAATCTGGGTTTGATCATTGGTATTTATGATGAGCCTGTAACTCCTGGTCAGTGCAACATGATCGTTGAAAGGCTAGGCGATTACCTGATCGAGCAGGGACTGTCAGCTACTGAGGTTGCAGCCAGACTTCGTTTAATGTTGTTGAGAATTTTGGTTTCTCACAAGACTCATTGA | 1377 | 45.68 | MAIAAENQPQEKITTTEASAVEKRRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHSNILRLYGYFYDQKRIYLVLEYAPRGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPRPIISSTAKDLISQMLVKDCSQRDCVLETAFTYYGFNLLFCGSNDLCELNRFKEKRKMSWQPYVDEHLMCDIGGNRLSAAAIIGQDGTVWAQTPNFPQLKPEELTAIMNDFEQPGSLAPAGLFHGGTKYMVIQGEPGAVIRGKKGGGGITIKKTNLGLIIGIYDEPVTPGQCNMIVERLGDYLIEQGLSATEVAARLRLMLLRILVSHKTH | 458 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28424415 | 28430320 | + | CcPI632755_11g015540.1 | Cco11g1554 | 192790 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1554 | 458 | FunFam | Aurora kinase A | 23 | 114 | - | - | |
Cco11g1554 | 458 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 272 | IPR011009 | - | |
Cco11g1554 | 458 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 150 | 162 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g1554 | 458 | SUPERFAMILY | Profilin (actin-binding protein) | 306 | 434 | IPR036140 | - | |
Cco11g1554 | 458 | SMART | prof_2 | 305 | 435 | IPR005455 | GO:0003779(InterPro) | |
Cco11g1554 | 458 | FunFam | Profilin | 305 | 435 | - | - | |
Cco11g1554 | 458 | FunFam | Serine/threonine-protein kinase ark1 | 23 | 280 | - | - | |
Cco11g1554 | 458 | SMART | serkin_6 | 31 | 281 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g1554 | 458 | Gene3D | Dynein light chain 2a, cytoplasmic | 303 | 435 | - | - | |
Cco11g1554 | 458 | Gene3D | Transferase(Phosphotransferase) domain 1 | 115 | 280 | - | - | |
Cco11g1554 | 458 | ProSiteProfiles | Protein kinase domain profile. | 31 | 287 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g1554 | 458 | CDD | PROF | 306 | 434 | IPR005455 | GO:0003779(InterPro) | |
Cco11g1554 | 458 | PANTHER | SERINE/THREONINE-PROTEIN KINASE IAL-RELATED | 10 | 270 | IPR030616 | GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER) | |
Cco11g1554 | 458 | Pfam | Profilin | 305 | 435 | IPR048278 | GO:0003779(InterPro) | |
Cco11g1554 | 458 | Gene3D | Phosphorylase Kinase; domain 1 | 18 | 114 | - | - | |
Cco11g1554 | 458 | PRINTS | Profilin signature | 404 | 417 | IPR005455 | GO:0003779(InterPro) | |
Cco11g1554 | 458 | PRINTS | Profilin signature | 344 | 364 | IPR005455 | GO:0003779(InterPro) | |
Cco11g1554 | 458 | PRINTS | Profilin signature | 307 | 316 | IPR005455 | GO:0003779(InterPro) | |
Cco11g1554 | 458 | PRINTS | Profilin signature | 417 | 434 | IPR005455 | GO:0003779(InterPro) | |
Cco11g1554 | 458 | PRINTS | Profilin signature | 368 | 382 | IPR005455 | GO:0003779(InterPro) | |
Cco11g1554 | 458 | PRINTS | Profilin signature | 325 | 334 | IPR005455 | GO:0003779(InterPro) | |
Cco11g1554 | 458 | CDD | STKc_Aurora | 30 | 270 | - | - | |
Cco11g1554 | 458 | PRINTS | Plant profilin signature | 305 | 318 | IPR005455 | GO:0003779(InterPro) | |
Cco11g1554 | 458 | PRINTS | Plant profilin signature | 356 | 370 | IPR005455 | GO:0003779(InterPro) | |
Cco11g1554 | 458 | PRINTS | Plant profilin signature | 375 | 384 | IPR005455 | GO:0003779(InterPro) | |
Cco11g1554 | 458 | PRINTS | Plant profilin signature | 388 | 403 | IPR005455 | GO:0003779(InterPro) | |
Cco11g1554 | 458 | PRINTS | Plant profilin signature | 408 | 421 | IPR005455 | GO:0003779(InterPro) | |
Cco11g1554 | 458 | PRINTS | Plant profilin signature | 331 | 344 | IPR005455 | GO:0003779(InterPro) | |
Cco11g1554 | 458 | PRINTS | Plant profilin signature | 421 | 434 | IPR005455 | GO:0003779(InterPro) | |
Cco11g1554 | 458 | ProSitePatterns | Protein kinases ATP-binding region signature. | 37 | 60 | IPR017441 | GO:0005524(InterPro) | |
Cco11g1554 | 458 | Pfam | Protein kinase domain | 33 | 270 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0249 | Cco-Chr5:1970957 | Cco11g1554 | Cco-Chr11:28424415 | 1.00E-99 | dispersed | |
Cco07g1416 | Cco-Chr7:28277382 | Cco11g1554 | Cco-Chr11:28424415 | 4.40E-53 | dispersed | |
Cco11g0072 | Cco-Chr11:746081 | Cco11g1554 | Cco-Chr11:28424415 | 5.00E-32 | dispersed | |
Cco11g0227 | Cco-Chr11:2206025 | Cco11g1554 | Cco-Chr11:28424415 | 1.80E-49 | dispersed | |
Cco11g1554 | Cco-Chr11:28424415 | Cco08g1352 | Cco-Chr8:25436011 | 1.30E-19 | dispersed | |
Cco11g1554 | Cco-Chr11:28424415 | Cco11g0226 | Cco-Chr11:2202593 | 7.40E-55 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87256 | PF00069 | Pkinase | 5.50E-69 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1554 | K08850 | - | csv:101219866 | 545.428 |