Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1554 ATGGCGATCGCTGCAGAGAACCAGCCCCAGGAGAAGATTACCACTACGGAGGCCTCTGCTGTCGAAAAGAGGAGATGGACGCTTAACGACTTTGACATTGGGAAGCCTCTCGGAAGAGGGAAGTTTGGTCATGTCTATCTGGCTAGAGAAAAGAGGAGTAATCACATTGTGGCTCTGAAAGTTCTATTCAAGAGCCAGTTACAACAGTCGCAGGTTGAGCACCAGCTTCGTCGGGAAGTTGAAATACAGAGTCATCTTAGACACTCCAACATTCTGCGCCTTTATGGATATTTCTACGATCAAAAAAGGATTTATTTGGTATTGGAATATGCGCCCAGAGGTGAGCTTTACAAGGAACTACAGAAGTGCAAGTACTTCAGTGAGAGACGCGCTGCTACTTACGTCGCGTCATTGGCTCGGGCACTCATATACTGTCATGGAAAACATGTAATACACAGAGACATCAAACCAGAAAATCTTCTAATTGGTGCCCAGGGTGAACTCAAGATAGCTGACTTTGGATGGTCAGTGCACACGTTCAACCGTAGGCGGACTATGTGTGGAACACTGGATTATCTGCCTCCTGAAATGGTGGAGAGTGTGGAACACGATGCAAGTGTGGATATCTGGAGCCTTGGTGTACTGTGCTATGAGTTTCTCTATGGGGTACCTCCATTTGAGGCTAAGGAACACTCTGACACATACAGGAGAATCGTGCAAGTAGATTTGAAGTTTCCTCCAAGACCAATCATTTCTTCAACTGCAAAGGATCTTATCAGTCAGATGCTTGTCAAGGATTGCTCTCAACGTGACTGTGTTCTTGAAACAGCTTTCACCTACTATGGATTTAACCTTTTATTTTGTGGATCTAACGACTTATGTGAGCTTAATCGGTTCAAGGAGAAGAGGAAGATGTCGTGGCAACCGTATGTTGATGAGCACTTGATGTGCGACATTGGAGGCAATCGTCTCTCTGCTGCTGCGATCATTGGCCAAGACGGCACTGTTTGGGCTCAGACCCCCAACTTTCCTCAGTTGAAGCCAGAAGAGTTAACAGCCATTATGAATGATTTTGAGCAACCTGGATCACTTGCCCCAGCTGGTTTGTTCCATGGTGGGACTAAGTACATGGTTATTCAAGGTGAACCCGGTGCTGTCATAAGAGGAAAAAAGGGTGGTGGCGGGATTACTATTAAGAAGACTAATCTGGGTTTGATCATTGGTATTTATGATGAGCCTGTAACTCCTGGTCAGTGCAACATGATCGTTGAAAGGCTAGGCGATTACCTGATCGAGCAGGGACTGTCAGCTACTGAGGTTGCAGCCAGACTTCGTTTAATGTTGTTGAGAATTTTGGTTTCTCACAAGACTCATTGA 1377 45.68 MAIAAENQPQEKITTTEASAVEKRRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHSNILRLYGYFYDQKRIYLVLEYAPRGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPRPIISSTAKDLISQMLVKDCSQRDCVLETAFTYYGFNLLFCGSNDLCELNRFKEKRKMSWQPYVDEHLMCDIGGNRLSAAAIIGQDGTVWAQTPNFPQLKPEELTAIMNDFEQPGSLAPAGLFHGGTKYMVIQGEPGAVIRGKKGGGGITIKKTNLGLIIGIYDEPVTPGQCNMIVERLGDYLIEQGLSATEVAARLRLMLLRILVSHKTH 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28424415 28430320 + CcPI632755_11g015540.1 Cco11g1554 192790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1554 458 FunFam Aurora kinase A 23 114 - -
Cco11g1554 458 SUPERFAMILY Protein kinase-like (PK-like) 19 272 IPR011009 -
Cco11g1554 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1554 458 SUPERFAMILY Profilin (actin-binding protein) 306 434 IPR036140 -
Cco11g1554 458 SMART prof_2 305 435 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 FunFam Profilin 305 435 - -
Cco11g1554 458 FunFam Serine/threonine-protein kinase ark1 23 280 - -
Cco11g1554 458 SMART serkin_6 31 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1554 458 Gene3D Dynein light chain 2a, cytoplasmic 303 435 - -
Cco11g1554 458 Gene3D Transferase(Phosphotransferase) domain 1 115 280 - -
Cco11g1554 458 ProSiteProfiles Protein kinase domain profile. 31 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1554 458 CDD PROF 306 434 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 10 270 IPR030616 GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER)
Cco11g1554 458 Pfam Profilin 305 435 IPR048278 GO:0003779(InterPro)
Cco11g1554 458 Gene3D Phosphorylase Kinase; domain 1 18 114 - -
Cco11g1554 458 PRINTS Profilin signature 404 417 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Profilin signature 344 364 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Profilin signature 307 316 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Profilin signature 417 434 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Profilin signature 368 382 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Profilin signature 325 334 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 CDD STKc_Aurora 30 270 - -
Cco11g1554 458 PRINTS Plant profilin signature 305 318 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Plant profilin signature 356 370 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Plant profilin signature 375 384 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Plant profilin signature 388 403 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Plant profilin signature 408 421 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Plant profilin signature 331 344 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Plant profilin signature 421 434 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524(InterPro)
Cco11g1554 458 Pfam Protein kinase domain 33 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1554 K08850 - - csv:101219866 545.428
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0249 Cco-Chr5:1970957 Cco11g1554 Cco-Chr11:28424415 1.00E-99 dispersed
Cco07g1416 Cco-Chr7:28277382 Cco11g1554 Cco-Chr11:28424415 4.40E-53 dispersed
Cco11g0072 Cco-Chr11:746081 Cco11g1554 Cco-Chr11:28424415 5.00E-32 dispersed
Cco11g0227 Cco-Chr11:2206025 Cco11g1554 Cco-Chr11:28424415 1.80E-49 dispersed
Cco11g1554 Cco-Chr11:28424415 Cco08g1352 Cco-Chr8:25436011 1.30E-19 dispersed
Cco11g1554 Cco-Chr11:28424415 Cco11g0226 Cco-Chr11:2202593 7.40E-55 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.6e-215 743.0
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT2G37620 96.8 7.6e-215 743.0
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.8e-214 740.7
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.5e-213 738.0
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.5e-213 738.0
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.2e-212 735.7
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT2G37620 95.6 3.9e-203 704.1
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.2e-214 741.5
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 4.9e-214 740.3
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT5G59370 97.1 6.5e-214 740.0
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.9e-213 738.4
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.1e-213 736.5
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT5G59370 93.9 8.7e-211 729.6
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT5G59370 94.4 5.3e-200 693.7
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 1.0e-214 742.7
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 8.4e-214 739.6
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.2e-213 737.6
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT3G46520 94.7 2.4e-200 694.9
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 5.8e-215 743.4
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 3.8e-214 740.7
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.9e-213 738.4
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.3e-213 736.1
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT3G12110 95.6 1.5e-202 702.2
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.8e-209 723.8
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.0e-208 719.5
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT3G18780 93.6 2.0e-199 691.8
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 9.6e-210 726.1
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 6.3e-209 723.4
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT1G49240 92.6 6.3e-209 723.4
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.1e-208 720.7
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT1G49240 92.3 4.1e-208 720.7
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT1G49240 93.6 2.0e-199 691.8
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.1e-217 749.6
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT5G09810 96.6 6.5e-214 740.0
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.9e-213 738.4
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 4.2e-213 737.3
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.5e-212 734.2
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT5G09810 98.6 1.3e-206 715.7
Cco11g0226 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.7e-57 216.5
Cco09g0025 . 1 131 Cytoskeleton Gene Families AT2G19760 72.5 3.6e-55 211.1
Cco07g1416 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Cco11g1554 . 305 435 Cytoskeleton Gene Families AT2G19760 72.5 1.2e-53 206.1
Cco11g0227 . 1 117 Cytoskeleton Gene Families AT2G19760 76.9 7.9e-50 193.4
Cco11g0226 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cco09g0025 . 1 131 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cco07g1416 . 1 131 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Cco11g1554 . 305 435 Cytoskeleton Gene Families AT4G29350 70.2 2.4e-51 198.4
Cco11g0227 . 1 117 Cytoskeleton Gene Families AT4G29350 76.9 1.1e-48 189.5
Cco11g0227 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.7e-38 153.7
Cco11g0226 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Cco09g0025 . 1 131 Cytoskeleton Gene Families AT4G29340 73.9 3.0e-57 218.0
Cco11g1554 . 305 435 Cytoskeleton Gene Families AT4G29340 72.4 4.1e-54 207.6
Cco07g1416 . 1 131 Cytoskeleton Gene Families AT4G29340 67.9 5.0e-52 200.7
Cco11g0227 . 1 117 Cytoskeleton Gene Families AT4G29340 65.8 3.0e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002459 2 3 1 2 1 1 3 2 2 1 1 1 3 2 2 2 2 4 3 2 2 2 2 2 1 1 2 3 1 2 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87256 PF00069 Pkinase 5.50E-69 CL0016 Cco PK