Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1554 ATGGCGATCGCTGCAGAGAACCAGCCCCAGGAGAAGATTACCACTACGGAGGCCTCTGCTGTCGAAAAGAGGAGATGGACGCTTAACGACTTTGACATTGGGAAGCCTCTCGGAAGAGGGAAGTTTGGTCATGTCTATCTGGCTAGAGAAAAGAGGAGTAATCACATTGTGGCTCTGAAAGTTCTATTCAAGAGCCAGTTACAACAGTCGCAGGTTGAGCACCAGCTTCGTCGGGAAGTTGAAATACAGAGTCATCTTAGACACTCCAACATTCTGCGCCTTTATGGATATTTCTACGATCAAAAAAGGATTTATTTGGTATTGGAATATGCGCCCAGAGGTGAGCTTTACAAGGAACTACAGAAGTGCAAGTACTTCAGTGAGAGACGCGCTGCTACTTACGTCGCGTCATTGGCTCGGGCACTCATATACTGTCATGGAAAACATGTAATACACAGAGACATCAAACCAGAAAATCTTCTAATTGGTGCCCAGGGTGAACTCAAGATAGCTGACTTTGGATGGTCAGTGCACACGTTCAACCGTAGGCGGACTATGTGTGGAACACTGGATTATCTGCCTCCTGAAATGGTGGAGAGTGTGGAACACGATGCAAGTGTGGATATCTGGAGCCTTGGTGTACTGTGCTATGAGTTTCTCTATGGGGTACCTCCATTTGAGGCTAAGGAACACTCTGACACATACAGGAGAATCGTGCAAGTAGATTTGAAGTTTCCTCCAAGACCAATCATTTCTTCAACTGCAAAGGATCTTATCAGTCAGATGCTTGTCAAGGATTGCTCTCAACGTGACTGTGTTCTTGAAACAGCTTTCACCTACTATGGATTTAACCTTTTATTTTGTGGATCTAACGACTTATGTGAGCTTAATCGGTTCAAGGAGAAGAGGAAGATGTCGTGGCAACCGTATGTTGATGAGCACTTGATGTGCGACATTGGAGGCAATCGTCTCTCTGCTGCTGCGATCATTGGCCAAGACGGCACTGTTTGGGCTCAGACCCCCAACTTTCCTCAGTTGAAGCCAGAAGAGTTAACAGCCATTATGAATGATTTTGAGCAACCTGGATCACTTGCCCCAGCTGGTTTGTTCCATGGTGGGACTAAGTACATGGTTATTCAAGGTGAACCCGGTGCTGTCATAAGAGGAAAAAAGGGTGGTGGCGGGATTACTATTAAGAAGACTAATCTGGGTTTGATCATTGGTATTTATGATGAGCCTGTAACTCCTGGTCAGTGCAACATGATCGTTGAAAGGCTAGGCGATTACCTGATCGAGCAGGGACTGTCAGCTACTGAGGTTGCAGCCAGACTTCGTTTAATGTTGTTGAGAATTTTGGTTTCTCACAAGACTCATTGA 1377 45.68 MAIAAENQPQEKITTTEASAVEKRRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHSNILRLYGYFYDQKRIYLVLEYAPRGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPRPIISSTAKDLISQMLVKDCSQRDCVLETAFTYYGFNLLFCGSNDLCELNRFKEKRKMSWQPYVDEHLMCDIGGNRLSAAAIIGQDGTVWAQTPNFPQLKPEELTAIMNDFEQPGSLAPAGLFHGGTKYMVIQGEPGAVIRGKKGGGGITIKKTNLGLIIGIYDEPVTPGQCNMIVERLGDYLIEQGLSATEVAARLRLMLLRILVSHKTH 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28424415 28430320 + CcPI632755_11g015540.1 Cco11g1554 192790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1554 458 FunFam Aurora kinase A 23 114 - -
Cco11g1554 458 SUPERFAMILY Protein kinase-like (PK-like) 19 272 IPR011009 -
Cco11g1554 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1554 458 SUPERFAMILY Profilin (actin-binding protein) 306 434 IPR036140 -
Cco11g1554 458 SMART prof_2 305 435 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 FunFam Profilin 305 435 - -
Cco11g1554 458 FunFam Serine/threonine-protein kinase ark1 23 280 - -
Cco11g1554 458 SMART serkin_6 31 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1554 458 Gene3D Dynein light chain 2a, cytoplasmic 303 435 - -
Cco11g1554 458 Gene3D Transferase(Phosphotransferase) domain 1 115 280 - -
Cco11g1554 458 ProSiteProfiles Protein kinase domain profile. 31 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1554 458 CDD PROF 306 434 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 10 270 IPR030616 GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER)
Cco11g1554 458 Pfam Profilin 305 435 IPR048278 GO:0003779(InterPro)
Cco11g1554 458 Gene3D Phosphorylase Kinase; domain 1 18 114 - -
Cco11g1554 458 PRINTS Profilin signature 404 417 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Profilin signature 344 364 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Profilin signature 307 316 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Profilin signature 417 434 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Profilin signature 368 382 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Profilin signature 325 334 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 CDD STKc_Aurora 30 270 - -
Cco11g1554 458 PRINTS Plant profilin signature 305 318 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Plant profilin signature 356 370 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Plant profilin signature 375 384 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Plant profilin signature 388 403 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Plant profilin signature 408 421 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Plant profilin signature 331 344 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 PRINTS Plant profilin signature 421 434 IPR005455 GO:0003779(InterPro)
Cco11g1554 458 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524(InterPro)
Cco11g1554 458 Pfam Protein kinase domain 33 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0249 Cco-Chr5:1970957 Cco11g1554 Cco-Chr11:28424415 1.00E-99 dispersed
Cco07g1416 Cco-Chr7:28277382 Cco11g1554 Cco-Chr11:28424415 4.40E-53 dispersed
Cco11g0072 Cco-Chr11:746081 Cco11g1554 Cco-Chr11:28424415 5.00E-32 dispersed
Cco11g0227 Cco-Chr11:2206025 Cco11g1554 Cco-Chr11:28424415 1.80E-49 dispersed
Cco11g1554 Cco-Chr11:28424415 Cco08g1352 Cco-Chr8:25436011 1.30E-19 dispersed
Cco11g1554 Cco-Chr11:28424415 Cco11g0226 Cco-Chr11:2202593 7.40E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87256 PF00069 Pkinase 5.50E-69 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1554 K08850 - csv:101219866 545.428