Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1561 ATGATGGCTGTTACCTCCGCCTGCAAGGACGCTGCTAGCAAGATGAGCAGCTTGGATAATGGGAAGTACGTTAGGTACACACCAGAGCAAGTGGAAGCCCTTGAGAGGCTTTATTATGAATGCCCAAAACCCAGTTCTATGCGCCGCCAGCAGCTTATCAGGGAATGCCCAATTCTCTCCAATATCGAACCAAAGCAGATCAAAGTTTGGTTTCAAAATCGGAGATGTAGAGAGAAGCAGAGGAAGGAGGCATCACGACTCCAGACTGTGAACAGGAAGCTTACGGCTATGAATAGACTCCTAATGGAGGAAAATGATAGGTTGCAGAAACAGGTGTCACAACTTGTGTATGAGAACAGCTATTTTCGTCAACAGACGCAGAATGCGACCTTAGCCACCACTGACACAAGTTGCGAGTCAGTGGTGACAAGTGGTCAACAGAATTTGACTCCGCCGCATCCACCAAAGGATGCCAGTCCCGCAGGACTTTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGATGCACTGGAGTTGCTGCTCGTGCATGTGGACTTGTGGGTCTCGAACCTACAAGAGTGGCTGAAATTCTTAAAGATTGGCCTTCTTGGTTTCGAGATTGCCGTGCCGTTGATGTTCTAAATGTCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTATATATGCAGCTCTATGCACCTACTACTTTGGCACCTGCTCGTGATTTCTGGCTGCTGCGATACACATCTGTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAGAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTGCAGTCCAGAACTTTGTAAGAGCAGAAATGCTACCAAGTGGCTATTTGATAAGACCTTGTGAAGGTGGTGGATCAATAATCCATATAGTTGATCACATGGACTTAGAACCTTGGAGTGTACCTGAAGTGTTGCGGCCATTATACAAGTCATCTACTCTGCTTGCTCAGAAGAACACAATGGCAGCATTACGCTTGTTGAGACAGATTTCACAAGAAGTTTCTCAACCAAATGTTACTGGTTGGGGAAGAAGACCTGCTGCACTTCGTGCTCTTAGCCAAAAATTGAGCAGAGGTTTCAATGAAGCAGTTAATGGGTTTACAGACGAGGGATGGTCTTTGTTAGAAAATGATGGCATTGATGATGTTACACTTCTTGTAAACATGTCTCATGGCAAGACAATGATGGGTGCAAATATTTCATATTCTAATGGCTTTCCATCCATGAGCAATGCAGTGCTTTGTGCCAAAGCGTCGATGTTATTACAGAATGTTACTCCAGCAATGCTCATCAGGTTCTTAAGAGAACACCGGTCGGAATGGGCAGACAGTAGTATTGATGCTTACTCAGCAGCAGCAATTAAGACCGGTCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGTCAGGTTATTCTTCCCTTGGCACAAACAGTTGAGCATGAAGAGTTTATGGAAGTTGTTAAATTTGAAAACGTGGGCCACTATAGGGATGATATGCTCATGCCTGGTGACATCTTCCTTCTCCAACTTTGCAATGGTTTGGAGGAGAATGCAGTTGGTACGTCTGCTGAACTCATCTTTGCTCCAATTGATGCCTCCTTTTCTGACGATGCACCAATTCTACCATCTGGCTTCCGCATCATTCCACTCGATTCTGGGATGGATGCTTCAAGTCCAAACCGCACACTTGATCTTGCTTCAGCTCTTGATGTTGGACCTGCAGGGAATAGAACTTCTGGTGATTGTGCTGGTCAATCAGGAAATTCAAAATCTGTGATGACAATTGCATTCCAATTTGTATTTGATGTTCACCTTCAAGATAATGTAGCCGCAATGGCACGACAGTATGTCAGGAGCATTATAGCATCTGTCCAGAGGGTGGCACTGGCTCTTTCCCCTTCGAATTTCGGTCCTCATGCTAACCTTCAGACACCAGCTGGTGCTCCTGAAGCACAGACGCTTGCTCGTTGGATCTCTCAAAGCTATAGGTGTTATATGGGCATGGAATTACTGAAGAATGAAGGAAGAGAATCCGTTCTCAAATCCCTTTGGCATCACTCAGATGCAGTCATGTGCTGCTCTTTGAAGGCATTGCCAAATTTTACATTTGCAAATCAATCTGGACTTGACATGCTTGAGACAACCTTGGTGGCTCTCCAAGACATTACTCTGGAGAAGATTTTTGATGACAATGGAAAGAAAACTTTAGCCTCAGAGTTCCCGCGGATAATGCAGCAGGGCTTCCTTTGTCTTCAAGGGGGTGTCTGCTTATCAAGCATGGGAAGGGCAGTATCCTATGAGAAAGCTGTGGCATGGAAGGTTTTGAATGAAGAAGAAAACGCCCACTGTATTTGCTTCATGTTTATGAACTGGTCTTTTGTTTGA 2529 45.31 MMAVTSACKDAASKMSSLDNGKYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWFRDCRAVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPAVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNVTGWGRRPAALRALSQKLSRGFNEAVNGFTDEGWSLLENDGIDDVTLLVNMSHGKTMMGANISYSNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADSSIDAYSAAAIKTGQCGLPGSHAGTFGGQVILPLAQTVEHEEFMEVVKFENVGHYRDDMLMPGDIFLLQLCNGLEENAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDASSPNRTLDLASALDVGPAGNRTSGDCAGQSGNSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQRVALALSPSNFGPHANLQTPAGAPEAQTLARWISQSYRCYMGMELLKNEGRESVLKSLWHHSDAVMCCSLKALPNFTFANQSGLDMLETTLVALQDITLEKIFDDNGKKTLASEFPRIMQQGFLCLQGGVCLSSMGRAVSYEKAVAWKVLNEEENAHCICFMFMNWSFV 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28509687 28516557 - CcPI632755_11g015610.1 Cco11g1561 192797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1561 842 Pfam START domain 166 374 IPR002913 GO:0008289(InterPro)
Cco11g1561 842 Gene3D - 200 376 IPR023393 -
Cco11g1561 842 FunFam Homeobox-leucine zipper protein REVOLUTA 22 77 - -
Cco11g1561 842 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677(InterPro)
Cco11g1561 842 CDD START_ArGLABRA2_like 160 375 - -
Cco11g1561 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 17 842 IPR044830 GO:0003700(InterPro)
Cco11g1561 842 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Cco11g1561 842 Pfam MEKHLA domain 701 841 IPR013978 -
Cco11g1561 842 SUPERFAMILY Bet v1-like 165 375 - -
Cco11g1561 842 Gene3D - 14 88 - -
Cco11g1561 842 SMART HOX_1 19 85 IPR001356 GO:0003677(InterPro)
Cco11g1561 842 SMART START_1 165 375 IPR002913 GO:0008289(InterPro)
Cco11g1561 842 ProSiteProfiles START domain profile. 156 370 IPR002913 GO:0008289(InterPro)
Cco11g1561 842 Pfam Homeodomain 22 80 IPR001356 GO:0003677(InterPro)
Cco11g1561 842 Coils Coil 91 118 - -
Cco11g1561 842 CDD bZIP 74 113 - -
Cco11g1561 842 FunFam homeobox-leucine zipper protein ATHB-15 201 382 - -
Cco11g1561 842 CDD homeodomain 22 82 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0011 Cco-Chr9:73107 Cco11g1561 Cco-Chr11:28509687 0.00E+00 dispersed
Cco11g1561 Cco-Chr11:28509687 Cco04g2301 Cco-Chr4:36539751 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60292 PF01852 START 4.00E-54 CL0209 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1561 K09338 - csv:101218438 1664.43