Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1567 ATGTCAACAAAGGAAGAATCTCAAATTTCCCAACATTCTTCCAGTAACAATCACTCCAAACCCAACAAGCGCCTTCATGCTGATTCCAGCAAGCACCCAATGTATCGCGGCGTAAGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCACGCAAGAAATCCCGCATTTGGCTCGGGACTTTCCCCACCCCTGAAATGGCCGCTCGAGCCCACGACGTTGCTGCCTTGTCCATCAAAGGTAATTCCGCCATTCTCAACTTCCCTGAACTCGCTCACTCCCTTCCCCGCCCTGTTTCCTTCGCCCCTCGCGACGTTCAAGCCGCCGCCGCCAAGGCCGCCCATATGGACCCTAATTTCCTCCACTACTCTCCTAATTCCCCTGTTTCCACTTCCCCCTCCCCCTCCCCCTCCTCCGCCGCCGACGACGACTCCGACGAACTCACCGAAATCGTCAAACTCCCTACTCTCGGCTCCAACTACGATCACTTCATCTCTAACAACGAGTTCGTGCTGATGGACTCGACGGAGGGATGGGTTTATCCCCCGCCTTGGTTACGAACCATGGAGGATTGCGGCTACAATACCAACAATATTATTGACGATTTGGGAATTGGGGTTGGGGATAGTAATTGCTTATGGGATTATTAA 657 53.58 MSTKEESQISQHSSSNNHSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGYNTNNIIDDLGIGVGDSNCLWDY 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28561775 28562431 - CcPI632755_11g015670.1 Cco11g1567 192803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1567 218 MobiDBLite consensus disorder prediction 1 34 - -
Cco11g1567 218 MobiDBLite consensus disorder prediction 125 144 - -
Cco11g1567 218 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677(InterPro)
Cco11g1567 218 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1567 218 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1567 218 CDD AP2 35 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1567 218 MobiDBLite consensus disorder prediction 1 20 - -
Cco11g1567 218 FunFam Ethylene-responsive transcription factor 2 33 92 - -
Cco11g1567 218 SMART rav1_2 34 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1567 218 Pfam AP2 domain 34 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1567 218 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1567 218 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1567 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 176 IPR051032 -
Cco11g1567 218 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1024 Cco-Chr6:14163526 Cco11g1567 Cco-Chr11:28561775 8.30E-48 dispersed
Cco10g1915 Cco-Chr10:32757745 Cco11g1567 Cco-Chr11:28561775 5.30E-21 dispersed
Cco10g1916 Cco-Chr10:32766924 Cco11g1567 Cco-Chr11:28561775 5.80E-27 dispersed
Cco11g0247 Cco-Chr11:2394036 Cco11g1567 Cco-Chr11:28561775 3.10E-39 dispersed
Cco11g1567 Cco-Chr11:28561775 Cco11g1590 Cco-Chr11:28799486 3.40E-18 dispersed
Cco05g0045 Cco-Chr5:482145 Cco11g1567 Cco-Chr11:28561775 2.30E-33 transposed
Cco06g0249 Cco-Chr6:2676148 Cco11g1567 Cco-Chr11:28561775 1.30E-32 transposed
Cco08g0255 Cco-Chr8:4602860 Cco11g1567 Cco-Chr11:28561775 5.70E-23 transposed
Cco09g0176 Cco-Chr9:1626472 Cco11g1567 Cco-Chr11:28561775 3.00E-40 transposed
Cco10g0252 Cco-Chr10:2726744 Cco11g1567 Cco-Chr11:28561775 7.70E-37 transposed
Cco11g1567 Cco-Chr11:28561775 Cco08g1380 Cco-Chr8:25730078 4.90E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60294 PF00847 AP2 8.20E-14 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1567 K09286 - csv:101217333 276.174