Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1567 | ATGTCAACAAAGGAAGAATCTCAAATTTCCCAACATTCTTCCAGTAACAATCACTCCAAACCCAACAAGCGCCTTCATGCTGATTCCAGCAAGCACCCAATGTATCGCGGCGTAAGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCACGCAAGAAATCCCGCATTTGGCTCGGGACTTTCCCCACCCCTGAAATGGCCGCTCGAGCCCACGACGTTGCTGCCTTGTCCATCAAAGGTAATTCCGCCATTCTCAACTTCCCTGAACTCGCTCACTCCCTTCCCCGCCCTGTTTCCTTCGCCCCTCGCGACGTTCAAGCCGCCGCCGCCAAGGCCGCCCATATGGACCCTAATTTCCTCCACTACTCTCCTAATTCCCCTGTTTCCACTTCCCCCTCCCCCTCCCCCTCCTCCGCCGCCGACGACGACTCCGACGAACTCACCGAAATCGTCAAACTCCCTACTCTCGGCTCCAACTACGATCACTTCATCTCTAACAACGAGTTCGTGCTGATGGACTCGACGGAGGGATGGGTTTATCCCCCGCCTTGGTTACGAACCATGGAGGATTGCGGCTACAATACCAACAATATTATTGACGATTTGGGAATTGGGGTTGGGGATAGTAATTGCTTATGGGATTATTAA | 657 | 53.58 | MSTKEESQISQHSSSNNHSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGYNTNNIIDDLGIGVGDSNCLWDY | 218 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28561775 | 28562431 | - | CcPI632755_11g015670.1 | Cco11g1567 | 192803 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1567 | 218 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Cco11g1567 | 218 | MobiDBLite | consensus disorder prediction | 125 | 144 | - | - | |
Cco11g1567 | 218 | SUPERFAMILY | DNA-binding domain | 34 | 92 | IPR016177 | GO:0003677(InterPro) | |
Cco11g1567 | 218 | Gene3D | AP2/ERF domain | 34 | 92 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g1567 | 218 | ProSiteProfiles | AP2/ERF domain profile. | 34 | 91 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g1567 | 218 | CDD | AP2 | 35 | 93 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g1567 | 218 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cco11g1567 | 218 | FunFam | Ethylene-responsive transcription factor 2 | 33 | 92 | - | - | |
Cco11g1567 | 218 | SMART | rav1_2 | 34 | 97 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g1567 | 218 | Pfam | AP2 domain | 34 | 83 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g1567 | 218 | PRINTS | Ethylene responsive element binding protein signature | 57 | 73 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g1567 | 218 | PRINTS | Ethylene responsive element binding protein signature | 35 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g1567 | 218 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 14 | 176 | IPR051032 | - | |
Cco11g1567 | 218 | MobiDBLite | consensus disorder prediction | 124 | 148 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g1024 | Cco-Chr6:14163526 | Cco11g1567 | Cco-Chr11:28561775 | 8.30E-48 | dispersed | |
Cco10g1915 | Cco-Chr10:32757745 | Cco11g1567 | Cco-Chr11:28561775 | 5.30E-21 | dispersed | |
Cco10g1916 | Cco-Chr10:32766924 | Cco11g1567 | Cco-Chr11:28561775 | 5.80E-27 | dispersed | |
Cco11g0247 | Cco-Chr11:2394036 | Cco11g1567 | Cco-Chr11:28561775 | 3.10E-39 | dispersed | |
Cco11g1567 | Cco-Chr11:28561775 | Cco11g1590 | Cco-Chr11:28799486 | 3.40E-18 | dispersed | |
Cco05g0045 | Cco-Chr5:482145 | Cco11g1567 | Cco-Chr11:28561775 | 2.30E-33 | transposed | |
Cco06g0249 | Cco-Chr6:2676148 | Cco11g1567 | Cco-Chr11:28561775 | 1.30E-32 | transposed | |
Cco08g0255 | Cco-Chr8:4602860 | Cco11g1567 | Cco-Chr11:28561775 | 5.70E-23 | transposed | |
Cco09g0176 | Cco-Chr9:1626472 | Cco11g1567 | Cco-Chr11:28561775 | 3.00E-40 | transposed | |
Cco10g0252 | Cco-Chr10:2726744 | Cco11g1567 | Cco-Chr11:28561775 | 7.70E-37 | transposed | |
Cco11g1567 | Cco-Chr11:28561775 | Cco08g1380 | Cco-Chr8:25730078 | 4.90E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60294 | PF00847 | AP2 | 8.20E-14 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1567 | K09286 | - | csv:101217333 | 276.174 |