Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1581 ATGGATTCCGGTAGCGGAAGTTTACAATCTTCAAGTGGTGGTGATGAGGAGTTGGAGTACAATTCTCATCACCAACCTCAACTTTTTCCCCCATCCCCACTTTTCTTCAACAACAATATTCCTCCTCTTTCTTCCCACATCACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTACCCACTGGTTCTTCATCAATCCCTCATCATCATCAACAACAACAACAACAACCACTTCCTTTTCACTACCAAAATCATCTCCTCCATCCACCCCCTTTCTACGATTTCCCTTCCAATTACAATTTACAACCCCACAATTTCAACTCCGATTCTTCCAATTCCTTTGTCAATCTCGAGGTTCTAAGATCTGAACCCACCCACTTCAAAAACCCAACCGTCCCCGACGGATCTACCCAAAACCAAATCCAAATTCGTTCAACCCCATCATCCTCCGGACCTTTACATCCTAAAGTCACTACTAAGAAGAGAACCAGAGCTTCACGGCGAGCCCCCACCACCGTTCTCACAACCGACACAACGAATTTCCGAGCAATGGTACAAGAGTTCACCGGAATTCCTTCTCCACCGTTCACTGCTGGTGGATCCTCCTATTCACGGCGATTTGATCTGTTTGGATTGGTTAGAACAAGCAATTCCACAGCTACGAGTCTAGAAGCTTCTGGATTGGGTCTTTACCCTTCTCGTTCGAAGGTACAACTGGCGAACGACGACAATGTTGTGGCGCAGAAGCAGGCAGCGGAGGCGGGTGGGATTTTTTCGTTTCAGTCGCTATCAGGACATGATTTTAATTCTAATTCTAAGGAAGTTAGAGAGCATTTGGAGACGCCCCACAATATTATTACTAGCCAACAGTTACTGTCAGCAGCGCTGCAAAATGATGAAACCTGGAGAGGCAACCGCAGCGGTACTACAACAACAGCGACAGCAACAGCAACGCTTTCGAATAACAACAATAATGCAGCAAATTGTAATCAAACTGGCAATGATGGTGATGCTGATGATTTTAATGATGATTGTGAAGATGGTGGTGGTAGTGGTAGTGTTAGGAAGTGGACTCAATTGGGCCTAGATGACTTCCTCCAGCTCAAAACTAAAGCAGATGGTAAGAATGGGCCAGATGAGGGAGAGGATCCAATTGGCATACAAAAGCGGGTGCCAACTACAAATTGGAGCCTAAATTCGCGGGCGGCTCAGGGAACTTTAGAAAAGTCAAGGCGCCGACGGACCGAGATGAAGCCGGAAACGGTGACACTCATTCTGGTCAACCTCGCCGGAGTCATGGAAAGGGCCGACGAATCTCTCTTACCTGGTGTCTACAAAGAGGTCGGTGCTGCCTTGCACACCGATCCTACTGGTCTCGGCTCCTTGACTCTTTTCAGATCCATCGTTCAGGCCGCTTGCTATCCGTTGGCTGCTTATTTGGCCGTCCGCCATAACCGAGCTCATGTGATTGCTCTCGGCGCTTTCCTCTGGGCCGCAGCTACGTTTCTCGTCGCCTTTTCCTCTACTTTCCTTCAGGTAGCTGTCTCAAGAGCATTGAATGGGATTGGCCTCGCATTAGTTGCACCTGCCATCCAGTCCCTTGTAGCAGATTCAACAGATGACAATAACCGTGGTGTGGCTTTTGGATGGCTTCAAACGACAGGCAACCTAGGCTCCATTATTGGCGGGTTGTGTTCAATCATGATAGCTCCAATAACATTTATGGGAATCCCCGGTTGGAGAATTGCATTTCATGTAGTTGGATTAATCAGTGTTGTTGTTGGCATTCTAGTCCGTTTCTTTGCACAGGATCCACATTTTTTGAACGATGGCATAAAAACTAGTAATCATGTTCCACCCCATAATTCTTTTTGGTCTGAAGTGAAGGTCTTGGTTAGGGAATCCAAATCAGTTATGAAGATTCCATCCTTCCAGATTATCGTAGCGCAGGGTGTCACAGGTTCATTTCCCTGGTCGGCCTTGTCATTTGCAACAATGTGGTTGGAGCTCAAGGGCTTCTCCCATCAGAAGACTGCTTTTCTGATGGGCATATTTGTGATTGGAAACTCTCTTGGAGGTTTGTTTGGTGGTAAAATGGGAGATATCCTCTCCACACGTTTCCCAAACTCTGGAAGGATTATTCTGGCCCAAATCAGCTCAGCTTCAGGCGTTCCTCTAGCTGCAGTTCTTCTGCTCTTCTTGCCTGATGGCCCCTCTACAGCAGTCATCCATGGACTAGTCTTGATCATTGTGGGGTTTTTCATTTCTTGGAATGCTCCAGCTACAAATAATCCTATTTTTGCAGAGATAGTTCCTGAGAAATCGCGGACTAGTGTCTATGCTTTAGATCGGTCCTTTGAGTCTATTTTGTCATCATTTGCCCCTCCTGTTGTCGGAATTCTGGCTCAGCATGTCTATGGATATAAACCTGTTCAGAAAGGATCTAGCGAATCTGAAGAGATTGACACAGATAGGGAGAATGCAGCATCATTAGCCCGGGCATTGTACACAGCAATAGGAATTCCATTGGCTCTCTGTTGTTTTATTTACTCGTTTCTCTACTGCACCTATCCAAGAGATAGAGAACGAGCGCGTATGGAAGTTTTAATCGAATCAGAGATGCAGCAAATAGAATCTGAAAGGTCACCTTCAGGTGCTGGATACTCTCAAGTTCATTTATCAGCATCAGACGAGTTATATGCTACAGATAGAACAGTCATCGATATGGACTATGAGGACGATCTAGATTTCGACGATGATGAAAAGACAGCCCTTTATCGCCAGTTGACATTTTCAAATTTTGTCAAACAATAG 2820 45.67 MDSGSGSLQSSSGGDEELEYNSHHQPQLFPPSPLFFNNNIPPLSSHITSSSSSSSSSSSSLPTGSSSIPHHHQQQQQQPLPFHYQNHLLHPPPFYDFPSNYNLQPHNFNSDSSNSFVNLEVLRSEPTHFKNPTVPDGSTQNQIQIRSTPSSSGPLHPKVTTKKRTRASRRAPTTVLTTDTTNFRAMVQEFTGIPSPPFTAGGSSYSRRFDLFGLVRTSNSTATSLEASGLGLYPSRSKVQLANDDNVVAQKQAAEAGGIFSFQSLSGHDFNSNSKEVREHLETPHNIITSQQLLSAALQNDETWRGNRSGTTTTATATATLSNNNNNAANCNQTGNDGDADDFNDDCEDGGGSGSVRKWTQLGLDDFLQLKTKADGKNGPDEGEDPIGIQKRVPTTNWSLNSRAAQGTLEKSRRRRTEMKPETVTLILVNLAGVMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQAACYPLAAYLAVRHNRAHVIALGAFLWAAATFLVAFSSTFLQVAVSRALNGIGLALVAPAIQSLVADSTDDNNRGVAFGWLQTTGNLGSIIGGLCSIMIAPITFMGIPGWRIAFHVVGLISVVVGILVRFFAQDPHFLNDGIKTSNHVPPHNSFWSEVKVLVRESKSVMKIPSFQIIVAQGVTGSFPWSALSFATMWLELKGFSHQKTAFLMGIFVIGNSLGGLFGGKMGDILSTRFPNSGRIILAQISSASGVPLAAVLLLFLPDGPSTAVIHGLVLIIVGFFISWNAPATNNPIFAEIVPEKSRTSVYALDRSFESILSSFAPPVVGILAQHVYGYKPVQKGSSESEEIDTDRENAASLARALYTAIGIPLALCCFIYSFLYCTYPRDRERARMEVLIESEMQQIESERSPSGAGYSQVHLSASDELYATDRTVIDMDYEDDLDFDDDEKTALYRQLTFSNFVKQ 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28690613 28702121 - CcPI632755_11g015810.1 Cco11g1581 192817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1581 939 Gene3D MFS general substrate transporter like domains 646 869 IPR036259 -
Cco11g1581 939 Gene3D MFS general substrate transporter like domains 421 609 IPR036259 -
Cco11g1581 939 CDD MFS_spinster_like 426 852 IPR044770 -
Cco11g1581 939 ProSiteProfiles Major facilitator superfamily (MFS) profile. 425 863 IPR020846 GO:0022857(InterPro)
Cco11g1581 939 Pfam Major Facilitator Superfamily 431 797 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cco11g1581 939 MobiDBLite consensus disorder prediction 1 16 - -
Cco11g1581 939 SUPERFAMILY MFS general substrate transporter 414 864 IPR036259 -
Cco11g1581 939 PANTHER SPINSTER 424 880 IPR044770 GO:0005215(PANTHER)|GO:0016020(PANTHER)
Cco11g1581 939 MobiDBLite consensus disorder prediction 372 388 - -
Cco11g1581 939 MobiDBLite consensus disorder prediction 1 78 - -
Cco11g1581 939 MobiDBLite consensus disorder prediction 131 158 - -
Cco11g1581 939 MobiDBLite consensus disorder prediction 25 78 - -
Cco11g1581 939 MobiDBLite consensus disorder prediction 372 396 - -
Cco11g1581 939 Pfam VQ motif 170 197 IPR008889 -
Cco11g1581 939 MobiDBLite consensus disorder prediction 127 173 - -
Cco11g1581 939 FunFam Major facilitator superfamily protein 417 815 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1581 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1451 Cco-Chr2:26894254 Cco11g1581 Cco-Chr11:28690613 7.50E-102 dispersed
Cco04g1646 Cco-Chr4:31728678 Cco11g1581 Cco-Chr11:28690613 5.20E-210 dispersed
Cco07g1023 Cco-Chr7:23458618 Cco11g1581 Cco-Chr11:28690613 1.60E-13 dispersed
Cco11g1581 Cco-Chr11:28690613 Cco11g1730 Cco-Chr11:30151835 2.60E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g395 . . . . Bpe02g00101 . . Bma01g02618 . . Cma01g01424 Cma09g00647 . . . Cpe06g00507 . . . . . . . . . . . . . . . Cone4ag1346 Cone7ag1585 . . Lsi04g02346 Csa03g04567 . . . . . . . . . . Sed12g1410 Cmo01g01473 Cmo09g00630 . . . Car09g00574 . Cpe02g00523 Bhi09g02610 Tan01g3960 Cmetu04g1462 . Hepe01g2239 Mch11g0787 . Cla11g01497 Cam11g1553 Cec11g1585 Cco11g1581 Clacu11g1711 Cmu11g1530 Cre11g1946 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001621 1 2 2 2 2 1 4 2 2 2 2 2 3 2 1 4 2 4 4 2 2 2 2 3 3 2 2 2 3 1 68