Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1584 ATGCAATTGGATTCGTTAAGGCTCTTTTCTGGTCCTCAGAAAAAGAAAACAATATATATCAGTAAAGCAACCAAAAGTGATAAATTGACAGTAAAAATGAGTGACAAGAGAGAGAATTCAGCTGATGAGGAAGTTGAAACAAAAGAGATGGATGATAGAAGTTTGACTCCAGATAATCAACCACGGGATGAGCGATACATTCACAAAGTTGGGGTTCCACCGAAGCAAAAACTCTACAAAGAAATCAAATCTGCAGTGAAAGAAACATTTTTCCCGGATGATCCTCTCCGTTCATTCAAGGATCAAACTAAGAGGCGGAAATTTATTCTCGGGGTCCAAGCCGTTTTTCCGATTCTTGATTGGGGAAGAACTTATAATTTGACTAAGTTTAGAGGAGATGTTATTTCTGGATTAACAATTGCTAGTCTTTGCATTCCACAGGATATTGGGTATGCCAAGCTTGCGAATTTGCCTCCAGAGTACGGTTTGTACTCCAGTTTTGTTCCACCATTAATCTATGCACTTATGGGTAGCTCAAGAGATATAGCCATTGGTCCAGTTGCTGTGGTTTCTCTCTTGTTGGGGACGCTGCTTCAAGCGGAAATCGATTCTGCTGCAAATCCAGAAGACTACAGGCGGCTGGCATTTACAGCTACATTCTTTGCGGGGATCACACAAGCCACCCTTGGAGTTCTGAGGTTGGGATTCCTTATTGACTTCTTGTCCCATGCTGCCATTGTTGGCTTCATGGGTGGAGCTGCCATCACCATTGCTCTCCAACAACTCAAAGGCTTTCTTGGCATCAAGAAATTCACAAAGAAAACAGATATTATCTCTGTTATGCAGTTAGTATTTGGCACAATCCGACACGGATGGAACTGGCAGACAATAGTGATTGCTGTAGCCTTCCTTGGCTTCCTTCTATTTGCAAAATTCATTGGGAAGAAGAACAAGAGGCTCTTCTGGGTGCCTGCAATTGCTCCACTTATATCTGTTGTACTGTCTACCATTTTGGTATACATCACTCGTGCAGATAAGGAAGGAGTTGCAATTGTGAAACACATAGAGAGAGGAATCAATCCCCCATCTGTGAAAGACTTATATTTATCAGGCCAATACCTTCCAAAAGGGTTGAAGATCGGTATTGTGGCGGGAATGGTAGCACTGACGGAAGCCGTTGCAATTGGAAGAACATTTGCTTCAATGAAAGACTATCAAATAGATGGGAACAAGGAAATGGTAGCAATGGGACTCATGAATGTTGTTGGTTCAATGACTTCCTGCTATGTAACAACAGGATCATTCTCTAGATCCGCCGTAAATTACATGGCTGGCTGCCAAACTGCAGTCTCCAACATTGTGATGTCTATTGTAGTACTCCTAACTTTGGCAGTCCTCACCCCATTATTCAAATATACTCCAAATGCAATTCTGTCCGCTATCATCATATCTGCTGTGATCAACCTGGTCGACTTGCATGCTGCGAAACTGATTTGGAAGATAGATAAATTCGATTTTGTTGCTTGTATGGGAGCCTTCCTTGGCGTCATCTTTTTCTCTGTTGAGATAGGCCTTCTTATTGCGGTTTCCATTTCCTTCGCCAAAATCCTTCTACAAGTTACCAGGCCAAGGACTGCAATTCTTGGAAAGATCCCGAGGACGACTGTTTACCGAAACATACTGCAATATCCTGAAGCAACCCAGGTTCCAGGGGTTTTGATTGTGAGAGTTGATTCGGCAATTTACTTTTCCAACTCCAATTACATCAAGGAAAGGATATTGAGATGGCTGGTTGATGAGGAAGAACAAACGAAAAAGTTATACCAGAACAAAATCCAGTTTCTAATAGTTGAAATGTCACCTGTTACTGACATAGACACGAGTGGCATACATGCTTTGGAAGAGCTAAATGGGAGTCTCAAGAAGAGAGAAATTCAGCTCATTTTAGCAAATCCGGGGCCCGTGGTGATCAACAAACTCCACGCATCGGAATTTGTAGATTTGATAGGCCAAGACCATATCTTCCTCACAGTTGCAGATGCAGTCTCATCTTGTAGTCCAAAGATAATGAACGACGTTTGA 2082 42.17 MQLDSLRLFSGPQKKKTIYISKATKSDKLTVKMSDKRENSADEEVETKEMDDRSLTPDNQPRDERYIHKVGVPPKQKLYKEIKSAVKETFFPDDPLRSFKDQTKRRKFILGVQAVFPILDWGRTYNLTKFRGDVISGLTIASLCIPQDIGYAKLANLPPEYGLYSSFVPPLIYALMGSSRDIAIGPVAVVSLLLGTLLQAEIDSAANPEDYRRLAFTATFFAGITQATLGVLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKKFTKKTDIISVMQLVFGTIRHGWNWQTIVIAVAFLGFLLFAKFIGKKNKRLFWVPAIAPLISVVLSTILVYITRADKEGVAIVKHIERGINPPSVKDLYLSGQYLPKGLKIGIVAGMVALTEAVAIGRTFASMKDYQIDGNKEMVAMGLMNVVGSMTSCYVTTGSFSRSAVNYMAGCQTAVSNIVMSIVVLLTLAVLTPLFKYTPNAILSAIIISAVINLVDLHAAKLIWKIDKFDFVACMGAFLGVIFFSVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNILQYPEATQVPGVLIVRVDSAIYFSNSNYIKERILRWLVDEEEQTKKLYQNKIQFLIVEMSPVTDIDTSGIHALEELNGSLKKREIQLILANPGPVVINKLHASEFVDLIGQDHIFLTVADAVSSCSPKIMNDV 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28730051 28733773 + CcPI632755_11g015840.1 Cco11g1584 192820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1584 693 MobiDBLite consensus disorder prediction 31 63 - -
Cco11g1584 693 CDD STAS_SulP_like_sulfate_transporter 563 678 - -
Cco11g1584 693 ProSiteProfiles STAS domain profile. 562 685 IPR002645 -
Cco11g1584 693 Gene3D STAS domain 542 688 IPR036513 -
Cco11g1584 693 Coils Coil 598 618 - -
Cco11g1584 693 ProSitePatterns SLC26A transporters signature. 159 180 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cco11g1584 693 FunFam Sulfate transporter 31 542 688 - -
Cco11g1584 693 PANTHER SULFATE TRANSPORTER 86 685 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco11g1584 693 Pfam Sulfate permease family 130 511 IPR011547 GO:0016020(InterPro)
Cco11g1584 693 Pfam STAS domain 563 681 IPR002645 -
Cco11g1584 693 NCBIfam sulfate permease 117 681 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco11g1584 693 SUPERFAMILY SpoIIaa-like 564 686 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0910 Cco-Chr3:11385321 Cco11g1584 Cco-Chr11:28730051 8.70E-299 dispersed
Cco07g1018 Cco-Chr7:23292179 Cco11g1584 Cco-Chr11:28730051 5.60E-181 dispersed
Cco11g0144 Cco-Chr11:1496493 Cco11g1584 Cco-Chr11:28730051 4.90E-185 dispersed
Cco09g1700 Cco-Chr9:28186202 Cco11g1584 Cco-Chr11:28730051 1.20E-247 transposed
Cco09g2217 Cco-Chr9:36508656 Cco11g1584 Cco-Chr11:28730051 2.20E-106 transposed
Cco11g1584 Cco-Chr11:28730051 Cco03g0908 Cco-Chr3:11328490 8.30E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1584 K17470 - csv:101207370 1187.56