Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1590 ATGGCAGCAGCCATGGATTTCTACAATGAAGGACCACAAACAGACCACTTCGGTGGTGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCTGCTTCTTCTCTCTCTACAAATTTCCCATCTTCTTCTTCTTCTTCTTCACCAACACCTAATCTCCTCCCTCCTTATTCTTCTTCCTTCAACAGCCACCTCAACTTCTCTCACTCAACCCCTCAACAGTCCAGTTTGTACTCAAATGGCTGCTCCACTTCGATGAACTCAGTATTTTCAGATGGGTTCTCGAACCAAAACCTCATTGGTTTCGAACAGCCATTCACAATTGGACCGCATCAATTATCATCACCTCAAATCCCCCATTCCCAAACTCAATTCAATCTTCTTCAAAACCAAACCCCACTAGCCTTTGCTTGGGGGCAACAAAACCATCAACCACCATCCTGCTATGAACAACAAACGCCCAGCTTCCTCAGCCCCAAGCCTATTCCAATGAAGCAAGTGGGTTCGTCTTCAAAACCCACTAAGCTTTATAGAGGGGTCAGGCAACGGCATTGGGGAAAATGGGTGGCAGAGATCCGACTCCCAAGGAACCGAACTCGGCTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCTAGACTTAATTTCCCCAATCTCAAGCACCAAGGCTCCTGCGTTGAAGGCGAATTCGGCGAGTACAGGCCTCTACATTCCTCAGTAGCTGCAAAGCTCCAAGCAATTTGTGAAAACTTGGCCAAGCCGCAGAAACAAGGCAAGTCAAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATCGTGCTCCACGGCCGCGGGAACAGCAGCGGTGAAGGTGGAGAACTCGTCACGGGCTGTCACAGAGAGTGACGGGTCTGCAGCATCTTCACCTTTATCAGATCTTACATTTCCTGACTTCACAGAGTTGCCATGGGATCAGAATCAAGCTTGGGAGAATTCAATGCTAGAGAAATATCCTTCGGAGATTGATTGGGCATCGATCTTACCTTAA 1089 47.93 MAAAMDFYNEGPQTDHFGGELMEAIVPFIKVASSSASSLSTNFPSSSSSSSPTPNLLPPYSSSFNSHLNFSHSTPQQSSLYSNGCSTSMNSVFSDGFSNQNLIGFEQPFTIGPHQLSSPQIPHSQTQFNLLQNQTPLAFAWGQQNHQPPSCYEQQTPSFLSPKPIPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPNLKHQGSCVEGEFGEYRPLHSSVAAKLQAICENLAKPQKQGKSKKPVTAAKKSRSQSCSTAAGTAAVKVENSSRAVTESDGSAASSPLSDLTFPDFTELPWDQNQAWENSMLEKYPSEIDWASILP 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28799486 28800574 + CcPI632755_11g015900.1 Cco11g1590 192826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1590 362 MobiDBLite consensus disorder prediction 305 325 - -
Cco11g1590 362 SMART rav1_2 179 242 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1590 362 CDD AP2 178 238 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1590 362 PRINTS Ethylene responsive element binding protein signature 202 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1590 362 PRINTS Ethylene responsive element binding protein signature 180 191 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1590 362 ProSiteProfiles AP2/ERF domain profile. 179 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1590 362 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 360 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cco11g1590 362 Gene3D AP2/ERF domain 179 237 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1590 362 FunFam Ethylene-responsive transcription factor 2 178 237 - -
Cco11g1590 362 Pfam AP2 domain 179 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1590 362 SUPERFAMILY DNA-binding domain 179 236 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1873 Cco-Chr2:31640038 Cco11g1590 Cco-Chr11:28799486 1.90E-27 dispersed
Cco04g1652 Cco-Chr4:31796602 Cco11g1590 Cco-Chr11:28799486 1.00E-64 dispersed
Cco06g0826 Cco-Chr6:9945995 Cco11g1590 Cco-Chr11:28799486 5.00E-29 dispersed
Cco11g0613 Cco-Chr11:6571005 Cco11g1590 Cco-Chr11:28799486 1.20E-19 dispersed
Cco11g0619 Cco-Chr11:6659177 Cco11g1590 Cco-Chr11:28799486 9.50E-17 dispersed
Cco11g1567 Cco-Chr11:28561775 Cco11g1590 Cco-Chr11:28799486 3.40E-18 dispersed
Cco11g1590 Cco-Chr11:28799486 Cco02g2028 Cco-Chr2:33248499 1.70E-17 dispersed
Cco11g1835 Cco-Chr11:31015923 Cco11g1590 Cco-Chr11:28799486 6.70E-16 dispersed
Cco11g1590 Cco-Chr11:28799486 Cco08g1250 Cco-Chr8:24299058 9.00E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60295 PF00847 AP2 2.80E-15 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1590 K09286 - csv:101214560 606.29