Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1590 | ATGGCAGCAGCCATGGATTTCTACAATGAAGGACCACAAACAGACCACTTCGGTGGTGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCTGCTTCTTCTCTCTCTACAAATTTCCCATCTTCTTCTTCTTCTTCTTCACCAACACCTAATCTCCTCCCTCCTTATTCTTCTTCCTTCAACAGCCACCTCAACTTCTCTCACTCAACCCCTCAACAGTCCAGTTTGTACTCAAATGGCTGCTCCACTTCGATGAACTCAGTATTTTCAGATGGGTTCTCGAACCAAAACCTCATTGGTTTCGAACAGCCATTCACAATTGGACCGCATCAATTATCATCACCTCAAATCCCCCATTCCCAAACTCAATTCAATCTTCTTCAAAACCAAACCCCACTAGCCTTTGCTTGGGGGCAACAAAACCATCAACCACCATCCTGCTATGAACAACAAACGCCCAGCTTCCTCAGCCCCAAGCCTATTCCAATGAAGCAAGTGGGTTCGTCTTCAAAACCCACTAAGCTTTATAGAGGGGTCAGGCAACGGCATTGGGGAAAATGGGTGGCAGAGATCCGACTCCCAAGGAACCGAACTCGGCTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCTAGACTTAATTTCCCCAATCTCAAGCACCAAGGCTCCTGCGTTGAAGGCGAATTCGGCGAGTACAGGCCTCTACATTCCTCAGTAGCTGCAAAGCTCCAAGCAATTTGTGAAAACTTGGCCAAGCCGCAGAAACAAGGCAAGTCAAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATCGTGCTCCACGGCCGCGGGAACAGCAGCGGTGAAGGTGGAGAACTCGTCACGGGCTGTCACAGAGAGTGACGGGTCTGCAGCATCTTCACCTTTATCAGATCTTACATTTCCTGACTTCACAGAGTTGCCATGGGATCAGAATCAAGCTTGGGAGAATTCAATGCTAGAGAAATATCCTTCGGAGATTGATTGGGCATCGATCTTACCTTAA | 1089 | 47.93 | MAAAMDFYNEGPQTDHFGGELMEAIVPFIKVASSSASSLSTNFPSSSSSSSPTPNLLPPYSSSFNSHLNFSHSTPQQSSLYSNGCSTSMNSVFSDGFSNQNLIGFEQPFTIGPHQLSSPQIPHSQTQFNLLQNQTPLAFAWGQQNHQPPSCYEQQTPSFLSPKPIPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPNLKHQGSCVEGEFGEYRPLHSSVAAKLQAICENLAKPQKQGKSKKPVTAAKKSRSQSCSTAAGTAAVKVENSSRAVTESDGSAASSPLSDLTFPDFTELPWDQNQAWENSMLEKYPSEIDWASILP | 362 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28799486 | 28800574 | + | CcPI632755_11g015900.1 | Cco11g1590 | 192826 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1590 | 362 | MobiDBLite | consensus disorder prediction | 305 | 325 | - | - | |
Cco11g1590 | 362 | SMART | rav1_2 | 179 | 242 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g1590 | 362 | CDD | AP2 | 178 | 238 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g1590 | 362 | PRINTS | Ethylene responsive element binding protein signature | 202 | 218 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g1590 | 362 | PRINTS | Ethylene responsive element binding protein signature | 180 | 191 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g1590 | 362 | ProSiteProfiles | AP2/ERF domain profile. | 179 | 236 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g1590 | 362 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 16 | 360 | IPR051758 | GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Cco11g1590 | 362 | Gene3D | AP2/ERF domain | 179 | 237 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g1590 | 362 | FunFam | Ethylene-responsive transcription factor 2 | 178 | 237 | - | - | |
Cco11g1590 | 362 | Pfam | AP2 domain | 179 | 228 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g1590 | 362 | SUPERFAMILY | DNA-binding domain | 179 | 236 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1873 | Cco-Chr2:31640038 | Cco11g1590 | Cco-Chr11:28799486 | 1.90E-27 | dispersed | |
Cco04g1652 | Cco-Chr4:31796602 | Cco11g1590 | Cco-Chr11:28799486 | 1.00E-64 | dispersed | |
Cco06g0826 | Cco-Chr6:9945995 | Cco11g1590 | Cco-Chr11:28799486 | 5.00E-29 | dispersed | |
Cco11g0613 | Cco-Chr11:6571005 | Cco11g1590 | Cco-Chr11:28799486 | 1.20E-19 | dispersed | |
Cco11g0619 | Cco-Chr11:6659177 | Cco11g1590 | Cco-Chr11:28799486 | 9.50E-17 | dispersed | |
Cco11g1567 | Cco-Chr11:28561775 | Cco11g1590 | Cco-Chr11:28799486 | 3.40E-18 | dispersed | |
Cco11g1590 | Cco-Chr11:28799486 | Cco02g2028 | Cco-Chr2:33248499 | 1.70E-17 | dispersed | |
Cco11g1835 | Cco-Chr11:31015923 | Cco11g1590 | Cco-Chr11:28799486 | 6.70E-16 | dispersed | |
Cco11g1590 | Cco-Chr11:28799486 | Cco08g1250 | Cco-Chr8:24299058 | 9.00E-88 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60295 | PF00847 | AP2 | 2.80E-15 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1590 | K09286 | - | csv:101214560 | 606.29 |