Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1602 ATGGCCACCTCAGTCCACAATCCTCAATTTCCTCATTTAGATACCGCCATTCGTAATTTCTCTAGTCTCCGCTCTGATTCCTCAGTTCGTGGTTGCAACTTCCCCTCCAATCATGATTTTACCATACCTAACAATCATGTGCAAATGGATGACGATGTTGAGTTTTCCAGTGACGAAGATAACGAGTCCGATTTCAGCGATTTGATTCGAAAAGGGATGACCGAATTGGAACCTTCGATTTTTGACCCGAGAGATTTCGGGACGGCGGATTGCTGGATCCACCGAAATGAGTCCATGCTCCGTCTTACGGGTAAACATCCCTTCAATTCCGAGCCTCCTTTACCTCGGTTGATGCACTATGGGTTCATTACTCCGGTCCCGCTCCATTACGTTCGTAACCACGGTCCGGTACCCAAGGCTAAGTGGGAGGATTGGACCGTTGAGGTTTGCGGTTTAGTGAAAAAACCAACCCGGTTCACCATGGACCAACTCGTTAACGATTTCCGCAGCCGTGAGTTTCCAGTCACTCTCGTCTGCGCCGGAAACCGCCGTAAAGAGCAGAATATGGTTAAAAAAACCATCGGATTCAACTGGGGTGCCGGCGGAACCTCCACGTCGGTCTGGCGGGGGGTCCCACTGCGAGACGTTCTGAAGCGCTGTGGCATCTTCAGCAGTAAAAAAGGGGCCCTCAATGTGTGTTTTGAAGGAGCTGAAAGTCTGCCCGGCGGCGGTGGGTCCAAGTACGGTACTAGCCTCAGTAAGGAAATAGCCATGGACCCGTCTAAAGATATAATTTTAGCCTATATGCAAAACGGCGACGTACTGGCACCGGACCACGGGTCTCCGGTGCGGGTCATCGCGCCCGGATTCATCGGTGGGCGGATGGTGAAATGGCTGAAACGCATTGTTGTAACTACACAAGAATCAGATAGCTATTACCATTATAGAGACAACAAAGTCCTCCCTTCCCATGTCGATGCAGAGTTGGCAAACGCGGAAGCTTGGTGGTACAAGCCGGAGTGTATTATTCGCGAGTTGAACATAAACTCGGTGATAACGACGCCATGTCACGAGGAAATCTTGCCAATAAATTCATGGACAACACAGCGGCCGTACACATTGAGGGGATATGCATATTCCGGAGGAGGAAGGAAAGTGACACGAGTGGAGGTGACTGTAGATGGCGGGGAGTCGTGGCGTCTGTGCGATTTGGACCGTCCTGAAAAGCCTACAAAATACGGCAAATATTGGTGTTGGTGTTTCTGGTCCCTGGAGGTTGAGGTTCTTGATTTGCTTGCTGCCAAGGAAATTGCAGTCCGCGCCTGGGATGAGACCTTCAACACTCAACCTGAAAAGCTCATCTGGAATCTCATGGGAATGATGAACAATTGCTGGTTTCGTGTGAAAACCAACATGTGCAAACCGTACAAAGGAGAGATCGGAATCGTTTTCGAACACCCAACTGTTCCCGGCAACCAAGCCGGCGGGTGGATGGCTAAAGAGAAGCATCTCGAGATATCCACCGACGCCAATCAAAGCATGAAGAAAAGTGTCTCCTCGCCCTTCATCAACACCGCCTCAAAGACATACACCATTTCTGATGTCAAAAAACACGACTCAGAACAATCCGCCTGGATCGTCGTCCACGGCCATGTTTACGACTGCACCCACTTCCTTAAAGACCATCCCGGCGGCACCGACAGCATTCTCATCAATGCCGGTACCGACTGCACCGAAGAATTCGACGCCATCCACTCCGACAAAGCCAAAAAAATGCTGGAGGAATACCGAATCGGCGAGTTAATCACCACCGGTTACGCCTCGGATTCATCGCCTAACAACTCCATCCACGGGCCTTCTAACCATGACCACCCTCAGTTAGCTCCAATAACAGAAGCAAGGCGCGTGGCTTTAATCCCGCGTGAGAAAATCCCCTGTAAATTAGTCTCCAAAACGTCAATCTCACACGACGTCAGACGGTTCAGATTCGCGTTGCCTTTAGAGGATCAAGTCCTTGGATTACCAGTGGGGAAACACATATTCCTATGCGCAAAAATAGACGGAAAGCTCTGCATGCGGGCCTACACACCAACGAGCGCCGTCCATGAAGTGGGCTACTTCGACCTGGTAGTCAAAATCTATTTCAAAAACGTGCACCCAAAATTCCCCAACGGAGGACTCATGTCGCAGTATTTAGAGTCTCTCCCACTTGGATCCGAACTCGAATTAAAAGGCCCATTGGGCCACATCGAATACACCGGGCGTGGCAGCTTTCTGGTGGACGGCAAGGTAAAGAAAGCGAAGAAGGTAGCCATGTTAGCCGGCGGAACGGGAATAACGCCGATATATCAAGTGGCGCAGGCGGTGTTGAAGGATGCTGAGGATGAAACAGAGATGTTTTTGGTGTATGCGAACAGGACGGAGAATGATATTCTGTTAAGGGAAGAGTTGGATGAATGGAGTAAGAGCGATAAGAGGCTTAAAGTGTGGTACGTTGTGAGTGAGTGTGTAAGGGAAGGGTGGGAATTCAGTGTGGGAGTGATTACGGAGAGTATCATGAGGGAGCATCTTCCAGAAGCTTCGCCGGATACCTTGGCCTTGGCTTGTGGACCTCCGCCGATGATTAAGTTCGCCGTGCAACCAAACTTGGAGAAGATGAACTACGATACTACTAATTCGTTGTTGGTGTTTTAG 2694 50.0 MATSVHNPQFPHLDTAIRNFSSLRSDSSVRGCNFPSNHDFTIPNNHVQMDDDVEFSSDEDNESDFSDLIRKGMTELEPSIFDPRDFGTADCWIHRNESMLRLTGKHPFNSEPPLPRLMHYGFITPVPLHYVRNHGPVPKAKWEDWTVEVCGLVKKPTRFTMDQLVNDFRSREFPVTLVCAGNRRKEQNMVKKTIGFNWGAGGTSTSVWRGVPLRDVLKRCGIFSSKKGALNVCFEGAESLPGGGGSKYGTSLSKEIAMDPSKDIILAYMQNGDVLAPDHGSPVRVIAPGFIGGRMVKWLKRIVVTTQESDSYYHYRDNKVLPSHVDAELANAEAWWYKPECIIRELNINSVITTPCHEEILPINSWTTQRPYTLRGYAYSGGGRKVTRVEVTVDGGESWRLCDLDRPEKPTKYGKYWCWCFWSLEVEVLDLLAAKEIAVRAWDETFNTQPEKLIWNLMGMMNNCWFRVKTNMCKPYKGEIGIVFEHPTVPGNQAGGWMAKEKHLEISTDANQSMKKSVSSPFINTASKTYTISDVKKHDSEQSAWIVVHGHVYDCTHFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKMLEEYRIGELITTGYASDSSPNNSIHGPSNHDHPQLAPITEARRVALIPREKIPCKLVSKTSISHDVRRFRFALPLEDQVLGLPVGKHIFLCAKIDGKLCMRAYTPTSAVHEVGYFDLVVKIYFKNVHPKFPNGGLMSQYLESLPLGSELELKGPLGHIEYTGRGSFLVDGKVKKAKKVAMLAGGTGITPIYQVAQAVLKDAEDETEMFLVYANRTENDILLREELDEWSKSDKRLKVWYVVSECVREGWEFSVGVITESIMREHLPEASPDTLALACGPPPMIKFAVQPNLEKMNYDTTNSLLVF 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28873764 28876778 + CcPI632755_11g016020.1 Cco11g1602 192838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1602 897 Gene3D - 345 521 - -
Cco11g1602 897 Gene3D - 523 603 IPR036400 -
Cco11g1602 897 Pfam Cytochrome b5-like Heme/Steroid binding domain 532 601 IPR001199 -
Cco11g1602 897 Gene3D - 748 897 IPR039261 -
Cco11g1602 897 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 741 891 IPR039261 -
Cco11g1602 897 Pfam Mo-co oxidoreductase dimerisation domain 342 471 IPR005066 GO:0016491(InterPro)|GO:0030151(InterPro)
Cco11g1602 897 PRINTS Eukaryotic molybdopterin domain signature 122 138 IPR008335 GO:0016491(InterPro)
Cco11g1602 897 PRINTS Eukaryotic molybdopterin domain signature 292 305 IPR008335 GO:0016491(InterPro)
Cco11g1602 897 PRINTS Eukaryotic molybdopterin domain signature 186 198 IPR008335 GO:0016491(InterPro)
Cco11g1602 897 PRINTS Eukaryotic molybdopterin domain signature 259 275 IPR008335 GO:0016491(InterPro)
Cco11g1602 897 PRINTS Eukaryotic molybdopterin domain signature 374 388 IPR008335 GO:0016491(InterPro)
Cco11g1602 897 PRINTS Eukaryotic molybdopterin domain signature 440 452 IPR008335 GO:0016491(InterPro)
Cco11g1602 897 PRINTS Eukaryotic molybdopterin domain signature 343 355 IPR008335 GO:0016491(InterPro)
Cco11g1602 897 PRINTS Eukaryotic molybdopterin domain signature 100 114 IPR008335 GO:0016491(InterPro)
Cco11g1602 897 PRINTS Eukaryotic molybdopterin domain signature 175 186 IPR008335 GO:0016491(InterPro)
Cco11g1602 897 PRINTS Eukaryotic molybdopterin domain signature 276 289 IPR008335 GO:0016491(InterPro)
Cco11g1602 897 PRINTS Eukaryotic molybdopterin domain signature 201 216 IPR008335 GO:0016491(InterPro)
Cco11g1602 897 PRINTS Eukaryotic molybdopterin domain signature 388 400 IPR008335 GO:0016491(InterPro)
Cco11g1602 897 PRINTS Eukaryotic molybdopterin domain signature 453 466 IPR008335 GO:0016491(InterPro)
Cco11g1602 897 PRINTS Eukaryotic molybdopterin domain signature 415 425 IPR008335 GO:0016491(InterPro)
Cco11g1602 897 Pfam Oxidoreductase molybdopterin binding domain 134 313 IPR000572 -
Cco11g1602 897 SUPERFAMILY E set domains 345 470 IPR014756 -
Cco11g1602 897 SUPERFAMILY Riboflavin synthase domain-like 634 753 IPR017938 -
Cco11g1602 897 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 641 753 IPR017927 GO:0016491(InterPro)
Cco11g1602 897 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 151 186 IPR022407 GO:0043546(InterPro)
Cco11g1602 897 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 527 602 IPR001199 -
Cco11g1602 897 FunFam Nitrate reductase [NADH] 748 897 - -
Cco11g1602 897 CDD cyt_b5_reduct_like 646 889 - -
Cco11g1602 897 PANTHER SULFITE REDUCTASE 69 474 - GO:0006790(PANTHER)|GO:0008482(PANTHER)|GO:0020037(PANTHER)|GO:0043546(PANTHER)
Cco11g1602 897 Gene3D Translation factors 634 747 - -
Cco11g1602 897 Gene3D - 88 335 IPR036374 -
Cco11g1602 897 FunFam Nitrate reductase 523 604 - -
Cco11g1602 897 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 558 565 IPR018506 GO:0020037(InterPro)
Cco11g1602 897 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 526 606 IPR036400 -
Cco11g1602 897 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 561 571 IPR001709 GO:0016491(InterPro)
Cco11g1602 897 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 809 820 IPR001709 GO:0016491(InterPro)
Cco11g1602 897 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 693 700 IPR001709 GO:0016491(InterPro)
Cco11g1602 897 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 865 873 IPR001709 GO:0016491(InterPro)
Cco11g1602 897 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 771 790 IPR001709 GO:0016491(InterPro)
Cco11g1602 897 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 797 806 IPR001709 GO:0016491(InterPro)
Cco11g1602 897 PIRSF Nitr_rd_NADH 18 896 IPR012137 GO:0006809(InterPro)|GO:0042128(InterPro)|GO:0050464(InterPro)
Cco11g1602 897 PRINTS Cytochrome B5 reductase signature 693 700 - -
Cco11g1602 897 PRINTS Cytochrome B5 reductase signature 771 790 - -
Cco11g1602 897 PRINTS Cytochrome B5 reductase signature 672 683 - -
Cco11g1602 897 PRINTS Cytochrome B5 reductase signature 738 752 - -
Cco11g1602 897 PRINTS Cytochrome B5 reductase signature 809 820 - -
Cco11g1602 897 PRINTS Cytochrome B5 reductase signature 865 873 - -
Cco11g1602 897 FunFam Nitrate reductase 345 521 - -
Cco11g1602 897 Pfam Oxidoreductase NAD-binding domain 772 879 IPR001433 GO:0016491(InterPro)
Cco11g1602 897 SMART Cyt_b5_2 530 602 IPR001199 -
Cco11g1602 897 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 82 343 IPR036374 -
Cco11g1602 897 FunFam NADH-cytochrome b5 reductase 632 747 - -
Cco11g1602 897 PRINTS Cytochrome B5 signature 589 601 IPR001199 -
Cco11g1602 897 PRINTS Cytochrome B5 signature 552 562 IPR001199 -
Cco11g1602 897 PRINTS Cytochrome B5 signature 562 576 IPR001199 -
Cco11g1602 897 PRINTS Cytochrome B5 signature 577 584 IPR001199 -
Cco11g1602 897 CDD eukary_NR_Moco 85 470 - -
Cco11g1602 897 Pfam Oxidoreductase FAD-binding domain 646 752 IPR008333 -
Cco11g1602 897 FunFam Nitrate reductase 86 335 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1602 K10534 - - csv:101216001 1578.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0944 Cco-Chr3:12154547 Cco11g1602 Cco-Chr11:28873764 0.00E+00 dispersed
Cco11g0308 Cco-Chr11:3102073 Cco11g1602 Cco-Chr11:28873764 1.40E-34 dispersed
Cco02g2578 Cco-Chr2:38044606 Cco11g1602 Cco-Chr11:28873764 2.80E-44 transposed
Cco03g0307 Cco-Chr3:3402820 Cco11g1602 Cco-Chr11:28873764 8.30E-50 transposed
Cco11g0723 Cco-Chr11:7986804 Cco11g1602 Cco-Chr11:28873764 5.60E-55 transposed
Cco11g1602 Cco-Chr11:28873764 Cco03g0942 Cco-Chr3:12089539 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90