Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1614 ATGAGTAACTTAGCAATTCAGTATGGGGGAATAAACCTTGGCCAAGGCTTCCCAAACTTTGACGGTCCCGAATTTGTAAAGGAAGCTGCAATTCAAGCCATCAAGGATGGGAAAAATCAGTACGCTCGTGGATATGGAGTGCCAGATTTGAACTTGGCTATTGCTGAGAGATTCAAGAAAGATTCTGAACTTGTTGTCGATCCTGAGAAGGAAGTTACAGTTACCTCCGGCTGCACTGAAGCAATTGCTGCAACCATGCTTGGGTTAATAAATCCTGGCGACGAGGTGATCCTTTTTGCTCCTTTTTATGATTCTTATGAAGCCACTCTATCGATGGCTGGTGCCAAAGTCAAGTGCATCACGTTACGCCCTCCAGATTTTGCTCTCCCAATAAATGAGCTCAGGTCTGCAATCTCAAAGGATACTCGGGCAGTTCTTATTAACACGCCACACAACCCAACGGGAAAAATGTTCACAAGGGATGAATTGAATGCGATTGCCTCTCTCTGCATTGAGAATGATGTGTTAGTTTTTGCTGATGAAGTTTATGACAAATTGTCTTTTGAAATGGAGCACATTTCCATAGCCTCCCTTCCAGGAATGTATGAGCGCACCGTTACCATGAATTCATTAGGAAAAACATTCTCCCTTACTGGTTGGAAGATAGGGTGGGCGATCGCCCCGCCTCATTTGACATGGGGGGTGCGACAAGCACATGCTTTCCTTACGTTTGCTACTTCTACTCCAATGCAGTCGGCTGCTGCCACAGCTCTCCGAGCACCCGAATCTTACTATGAGGGGCTGAAGAAAGATTACCTGGCAAAGAAAGCCATTTTAGAAGAGGGACTGAAGGCAGTTGGTTTCAAGGTATTTCCATCAAGTGGAACCTACTTTATTATTGTCGATCACACCCCTTTCGGGTTGAAGAACGACGTTGACTTTTGTGAGTATCTGATCAAAGAAGTTGGAGTCGTTGCTATTCCAACCAGTGTTTTCTACCTTAACCCAGAAGATGGGAAAAATCTAGTTAGATTTACATTCTGCAAAGATGAGAACACCCTCAGGGCCGCGGTCGAGAGGATGAAGGAGAAGCTAATTAGGAAGTCATGA 1110 44.86 MSNLAIQYGGINLGQGFPNFDGPEFVKEAAIQAIKDGKNQYARGYGVPDLNLAIAERFKKDSELVVDPEKEVTVTSGCTEAIAATMLGLINPGDEVILFAPFYDSYEATLSMAGAKVKCITLRPPDFALPINELRSAISKDTRAVLINTPHNPTGKMFTRDELNAIASLCIENDVLVFADEVYDKLSFEMEHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHAFLTFATSTPMQSAAATALRAPESYYEGLKKDYLAKKAILEEGLKAVGFKVFPSSGTYFIIVDHTPFGLKNDVDFCEYLIKEVGVVAIPTSVFYLNPEDGKNLVRFTFCKDENTLRAAVERMKEKLIRKS 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28963772 28964881 + CcPI632755_11g016140.1 Cco11g1614 192850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1614 369 CDD AAT_like 11 363 - -
Cco11g1614 369 Gene3D Aspartate Aminotransferase, domain 1 1 361 IPR015422 -
Cco11g1614 369 PANTHER FI04487P 1 366 IPR051326 GO:0005737(PANTHER)|GO:0016212(PANTHER)
Cco11g1614 369 SUPERFAMILY PLP-dependent transferases 8 363 IPR015424 -
Cco11g1614 369 Gene3D - 23 261 IPR015421 -
Cco11g1614 369 Pfam Aminotransferase class I and II 10 360 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Cco11g1614 369 FunFam Aminotransferase, class I/classII 23 261 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1614 K23977 - - csv:101217124 717.998
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1017 Cco-Chr7:23280644 Cco11g1614 Cco-Chr11:28963772 3.10E-39 dispersed
Cco09g0521 Cco-Chr9:4584502 Cco11g1614 Cco-Chr11:28963772 2.70E-77 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g293 . . . Bda03g00529 . . . Bma01g02642 . . . Cma09g00806 . . . Cpe06g00641 . . . . . . . . . . . . . . . Cone4ag1388 Cone7ag1547 . . Lsi04g02378 Csa04g01815 . . . . . . . . . . . . Cmo09g00799 . . . Car09g00722 . . Bhi09g02655 . . . . . . Cla11g01524 Cam11g1584 Cec11g1613 Cco11g1614 Clacu11g1741 Cmu11g1559 Cre11g1975 . . Chy07g00661 Cme07g00869