Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1620 ATGGGAGCTGAATCAGGGCTTGCAATGTTTTGTGGAATAATTCATAAAATAAAACCCTACTTAGCTATGATTTCCTTGCAATTTGGATATGCAGGGATGTATATTGTCACGATGCTTTGTCTTAAGAAGGGCATGAACCATTACGTTCTTGCCGTTTATCGACATGTCGTTGCCACCATTGTCATCTCTCCCTTCGCCATCGTCCTCGAAAGAAAAATAAGGCCAAAGATGACATTTCCAATCTTTGCACGAATATTGCTCCTCGGGTTTCTTGAGCCAGTGTTGGATCAAAATCTATACTATGTGGGTTTGAAACTCACTTCAGCAACATTCACTTCTGTCACCATCAATATTCTCCCTGCAGTAACCTTCATTATGGCTCTCATTTTCAGGCTAGAAAGTGTGAATTTGAAGAAGATTCGTAGCATCGCGAAGGTGGTAGGAACATTGGTGACAATCGGCGGAGCAATGGTGATGACTCTATACAAAGGACCAATCGTCGACATATTCCACGGCCATGGACGCCACGCCGCCCACCACAGCACTGAGTCCGCCGACCAGCACTGGGTCCTCGGAACCCTCATGCTTCTCGGCAGCATCGTCGGCTGGTCCGGTTTCTTCATCTTGCAATCCTTCACACTGAGGAAATACCCGGCGGAGCTGTCGTTGACCGCCCTGATATGCGTGGCCGGCACGGTGGAGGGCTCCATTGTGACGCTTATTATGGAGCGTGACTTTAGCGTGTGGGCCATTGGCTGGGACTCTCGCCTTCTTGCCGCTGTTTATACCGGTGTGATATGCTCTGGACTTGCATATTACATACAAGGAGTGGTGATTCGGGAACGTGGCCCAGTTTTTGTTACCTCTTTTACCCCTCTCTGCATGATTATTACCGCCGTCCTTGGCTCCATTGTTTTGGCTGAGCAAATTCACCTTGGAAGCATAATCGGAGCTATTTTCATAGTGATGGGGCTATACTTAGTGGTGTGGGGCAAAGCCAAGGACCATCTAAACAAATTGACAAATCAAAAAAGCGGCGCCACCACCACCGAATTACCGATCACCGCCGAGCCGGAAACCACCGCCACCGCCGAGCGTTGTTCTTCCAAGGCTCCACCGGCGTGA 1125 48.98 MGAESGLAMFCGIIHKIKPYLAMISLQFGYAGMYIVTMLCLKKGMNHYVLAVYRHVVATIVISPFAIVLERKIRPKMTFPIFARILLLGFLEPVLDQNLYYVGLKLTSATFTSVTINILPAVTFIMALIFRLESVNLKKIRSIAKVVGTLVTIGGAMVMTLYKGPIVDIFHGHGRHAAHHSTESADQHWVLGTLMLLGSIVGWSGFFILQSFTLRKYPAELSLTALICVAGTVEGSIVTLIMERDFSVWAIGWDSRLLAAVYTGVICSGLAYYIQGVVIRERGPVFVTSFTPLCMIITAVLGSIVLAEQIHLGSIIGAIFIVMGLYLVVWGKAKDHLNKLTNQKSGATTTELPITAEPETTATAERCSSKAPPA 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29020257 29023149 + CcPI632755_11g016200.1 Cco11g1620 192856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1620 374 MobiDBLite consensus disorder prediction 349 374 - -
Cco11g1620 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 333 - -
Cco11g1620 374 PANTHER WAT1-RELATED PROTEIN 21 342 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cco11g1620 374 Pfam EamA-like transporter family 191 329 IPR000620 GO:0016020(InterPro)
Cco11g1620 374 Pfam EamA-like transporter family 23 149 IPR000620 GO:0016020(InterPro)
Cco11g1620 374 MobiDBLite consensus disorder prediction 349 367 - -
Cco11g1620 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g1312 Cco-Chr11:25877024 Cco11g1620 Cco-Chr11:29020257 5.80E-55 dispersed
Cco11g1620 Cco-Chr11:29020257 Cco11g1651 Cco-Chr11:29376152 2.80E-36 dispersed
Cco01g1164 Cco-Chr1:17277539 Cco11g1620 Cco-Chr11:29020257 2.60E-57 transposed
Cco02g1601 Cco-Chr2:28650030 Cco11g1620 Cco-Chr11:29020257 4.00E-59 transposed
Cco04g0696 Cco-Chr4:21559731 Cco11g1620 Cco-Chr11:29020257 6.00E-99 transposed
Cco06g0933 Cco-Chr6:12276538 Cco11g1620 Cco-Chr11:29020257 2.00E-69 transposed
Cco06g1158 Cco-Chr6:20341212 Cco11g1620 Cco-Chr11:29020257 3.60E-52 transposed
Cco11g1361 Cco-Chr11:26446369 Cco11g1620 Cco-Chr11:29020257 3.60E-93 transposed
Cco11g1620 Cco-Chr11:29020257 Cco08g0692 Cco-Chr8:18357870 2.30E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1620 - - - 0.0