Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1621 ATGGAGCCTCCGGCTGAGCAATTGGGGAATGCGACGGAAGTTGGCGCCACTGAGATCGGCAAACGGGAGCTCAGAAGTGTTCGCCGTAAACTGGTACAGTCTACGCTGCTTCCTCACAAGCCTCAAGAACAGGAGGAGAATGGAGTCGATCATGAGGAGGAGAACAATTGCGGCGAGGAGGCGGAATTATGTGGGAGTCAGGGCAAGAAGAAAAGGAAGTCGCAGGTGAAGAAGACGCCTCAATCGAGAAGTTCAAAGAAGGCGAAGGAAAAGCGAGCAGTAAACTTGACGCCAAAGAAAATTTTGCATTTTGAAGAGGCAACTCCCACAATTCCCGACTTGCGTCTGGAGGCAAAAATGACTAGAGAGGAAAATTCACGGATGTTTGCAGGAAGGCAAATACATCCCTTCTTTTCATCCCTAAAAGCAGGGAAGAAAAGTCAAGAGGCAACTCAATCGGCAGAGAGAGGGTGTACTGTTGAGAAAAAGGAAAGTAGAACGGACTGTAATCCCATCCACGTCTATGAAGAAACTGGGGATGATGAACCATCTCCAGACTGGAAAAACTGGACTTTCACTGACAGAAATATTATACATAATGGCCATGTATTACAAAAAGCTTGTTCATCAGTATTTGAAGGCTCTGTTAAGTCTTTAAGTTTAGATGACCTTCCCATTGTGTTGCCACCCTCCGATTCTACTCCTGGTACAAACAAGGAGCCCATGGATCATGATTCCATCAAGCAAGAATGCATTAAAGAGTTAACGTCAACTGTATACAATGTGGATGCTGAAAAGGAAATAATGCTCCATCACCTCCTAAGTAGTGCAGAAATGGATGATAACTTGAATAATACACGTGGGCTTAGTGATTCTGAAGCAAGGCCAATTCTTGAGCATCAAAGTAGATTTCTTCAGGACAGAATGCAGTCCTACTACCTTCGTTGTCAAAGCTGTCACAAAAATTGTTTATGGACATACAAATATCAGCCGAAGATGGCTATGGAGGTATGTGGTAATCTCGAATCAGTAAAGTTCTTGAGTGAGTGGCTACACCTCTGGCATGAAAGAAATTCACAGAACAACAAAGATTTTGGTGCAGGGAATAAATTCCAGAAGCAAGATAACAATGGTTACTGTTCTCAGAGTGATTCTGACTATGAAAGTCCAGATGGAGAGGATAGCCTGACGAATGTTCTCCTTGTCACGGGATCATCTGGGAGTGGGAAATCTGCGGCCATTTATGCTTGTGCTGAAGAGCATGGTTTCAGGGTTTTTGAGTTCAGTGCATCTGTCATTCGATCAGGAGCTGTTCTCAAGCAGATGATTGGAGAGGCTTTACAATCTCATCAGCTAAAATGGTCAGTAAAAAATTCCCAGGGATCAAGGAACAATTTTATTGAGAAATCCTCCTCTCTTCAAGAGAGTACAGCAGCCAAATGTTTAGCGAGTGAGTTGATTGAACTCATCCCTTTGTCAGACGACGATTCTAAAGATTACATTAAAGGTGTTGGAGAATTTGAAGACATCGGATCTGGAAGCCTCAGCAACCAAGGTGAAGCCAAGCCTTTAATTCTTTTAGAGGACGTGGATATCATTTTTCTTGAGGATCGAGGTTTTATTTCTGCAATTCAAGAGATTGCTGACACAGGAAAGGGACCCATAATTTTGACCAGCAATAGTAGCGATCCTGTTCTCCCTGATAATTTGAATAGGCTACAGGCCTCTTTTACACGACCATCATCAATGGAACTACTCAGCCATTTGTATATGATTTGTGCTTCTGAAGGAGTCAGCATCCAACCATGCTTACTTGAGCGCATTATTCATTATTGCCACAGAGATATACGGAAAACCATTATGCATCTTCAGTTCTGGTGCCAGGGTACAAGATTTAGAGATAAAATTCAGAAAAAGTATGGTTCACTTTTATTTGATATTGATGCTGGCCATCAGATACTGCCGGTGATAATGCCGTGGAGTTTCCCATCTCAGTTATCAGAGGTAGTTGACAAAGAGATAACAAAGTCGTTATTAGAAATGGAAACAACTTGCTTGCTGGAGGCAAGTGAAGGTGAATTTAATAAAGAGGAAATGCAGAATGGTCTGGACTACCAAAATTATGAAGACAACTATCTTTTAGACGCCAAGAAGGCAGCAATGTTGAGTAGGAATGGCTTGATTCAAGATCACAATGAATTTGCAGCTAAGTTTGATGCTGCACATGAGTGTTCTGATGTTTCAGGAACCCCTATTCCTTTATCTGGGAAGAAGCACCGAAGAAGGCTGGATATGGTAGTGTCTTCTGATTCTGAAGATGTTCCCATCACCAAGGAATGTTCTTTAGTACCAAATAAAGATGACGGTATATTATCATCTCACCATCAAATATCTCCAAATTACTCAAGCCCATTAAACGGGCTGCTTTATCATATGGTAGATAATATTGTTGAAGATTATTATCCAACTTCAGAAACTGCAGGAGGTATACATGTGAATGAGATGTCCATGTCTGTCACTACCTCATATGTACCAGAATCAATTTTTGTTCCTGAGACTGAAATTCATGATATGGAGTTGTTTCCCAAAATGTTATCCCATGGTGACGGTGCCAGTCCAGAAGTTTCTATGGATGAGCTTTTTCAGAATGTGTTAGCAGTTGAACCCAATAGTTTTTGTTCACCTACACATACTGTACAAGAAACCACAGCTATTTTGGAAGATACTTGCAACGTATTTAATTTATCTCGCCTAGAGGGGGAAGGATTTTCTTGTCATGGACATATAGAAAACATTATCAGAGGGTATCCTGTGATGGATGAGTGCAGCCGTGTAGACTTTAACGAGTCCAAGTTTGTAGAGAAACCTGAATTGAGTGTGCTGGGTGATTCAGTGCATGAATTGTGGAAACAACTTCGCCTCGGTCGATTAGATTTTCTAGGACATCATGTCCCACTCCCACCAGAAAAGAAAGAAACCTGTCAGATCGTCAAACTAGTTCACGAAATGAGCCATCTAATGTCAGATTCGGACCTGCTGTCTTCCTGCCGACCACAAGATATGTTGGAGACGCCAACACTTATGTCTGAGGAATCAGACTCATTCGACTGGGGAGGTGAGCAACTGCAGATGGCATCTACAATTGCTCAGCATGGATTTAGCCTCATTGCTAATGATCTTACTACCATGGGTTCTCAAGTCGGCTTTGGCAACAATGTGGATATCGTATCAGAAATGCTTGCCTCTGCAACTAATACAGCAGCATTGGGTAAATTGTTGAGGCATAATATGATGGAAAGCTCCTCTTCCACTAAGAAGATTTTGAATCTGGGCCTTCCAGGAAATAGTCATATGCAAGAGAGAATTATGAAATCACGCCTCTTCGACGTAATTCGGCAGGTGGCTCCAGACAGATCGTTTTTGGCACTGAAAGGTGTTCAATTCTTCGAATATCTTTCTTCATTGCGTTGCATTTCAAGATCAGAGGCTTTACGTTTATCAAAAGGCACTAATAAGATGAAACGACGAAGGGGACGAGTTGCACGACATTACTTGAGTACCGGTTCTCATCTGTTCTCCCCTGAAGATATAACATTGCTGGGACAATCTAAGCTTCCATATAAAGATATTCAAGGATGTTAA 3642 41.98 MEPPAEQLGNATEVGATEIGKRELRSVRRKLVQSTLLPHKPQEQEENGVDHEEENNCGEEAELCGSQGKKKRKSQVKKTPQSRSSKKAKEKRAVNLTPKKILHFEEATPTIPDLRLEAKMTREENSRMFAGRQIHPFFSSLKAGKKSQEATQSAERGCTVEKKESRTDCNPIHVYEETGDDEPSPDWKNWTFTDRNIIHNGHVLQKACSSVFEGSVKSLSLDDLPIVLPPSDSTPGTNKEPMDHDSIKQECIKELTSTVYNVDAEKEIMLHHLLSSAEMDDNLNNTRGLSDSEARPILEHQSRFLQDRMQSYYLRCQSCHKNCLWTYKYQPKMAMEVCGNLESVKFLSEWLHLWHERNSQNNKDFGAGNKFQKQDNNGYCSQSDSDYESPDGEDSLTNVLLVTGSSGSGKSAAIYACAEEHGFRVFEFSASVIRSGAVLKQMIGEALQSHQLKWSVKNSQGSRNNFIEKSSSLQESTAAKCLASELIELIPLSDDDSKDYIKGVGEFEDIGSGSLSNQGEAKPLILLEDVDIIFLEDRGFISAIQEIADTGKGPIILTSNSSDPVLPDNLNRLQASFTRPSSMELLSHLYMICASEGVSIQPCLLERIIHYCHRDIRKTIMHLQFWCQGTRFRDKIQKKYGSLLFDIDAGHQILPVIMPWSFPSQLSEVVDKEITKSLLEMETTCLLEASEGEFNKEEMQNGLDYQNYEDNYLLDAKKAAMLSRNGLIQDHNEFAAKFDAAHECSDVSGTPIPLSGKKHRRRLDMVVSSDSEDVPITKECSLVPNKDDGILSSHHQISPNYSSPLNGLLYHMVDNIVEDYYPTSETAGGIHVNEMSMSVTTSYVPESIFVPETEIHDMELFPKMLSHGDGASPEVSMDELFQNVLAVEPNSFCSPTHTVQETTAILEDTCNVFNLSRLEGEGFSCHGHIENIIRGYPVMDECSRVDFNESKFVEKPELSVLGDSVHELWKQLRLGRLDFLGHHVPLPPEKKETCQIVKLVHEMSHLMSDSDLLSSCRPQDMLETPTLMSEESDSFDWGGEQLQMASTIAQHGFSLIANDLTTMGSQVGFGNNVDIVSEMLASATNTAALGKLLRHNMMESSSSTKKILNLGLPGNSHMQERIMKSRLFDVIRQVAPDRSFLALKGVQFFEYLSSLRCISRSEALRLSKGTNKMKRRRGRVARHYLSTGSHLFSPEDITLLGQSKLPYKDIQGC 1213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29029906 29039567 + CcPI632755_11g016210.1 Cco11g1621 192857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1621 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 632 IPR027417 -
Cco11g1621 1213 Gene3D - 580 642 - -
Cco11g1621 1213 MobiDBLite consensus disorder prediction 1 93 - -
Cco11g1621 1213 MobiDBLite consensus disorder prediction 70 85 - -
Cco11g1621 1213 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 46 1205 IPR004582 GO:0000077(PANTHER)|GO:0003682(PANTHER)|GO:0003689(PANTHER)|GO:0006281(InterPro)|GO:0006281(PANTHER)|GO:0033314(PANTHER)
Cco11g1621 1213 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 582 643 - -
Cco11g1621 1213 Gene3D - 322 578 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1621 K26118 - - csv:101216488 1968.36
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g277 . Blo12g00671 . Bda03g00534 . Bpe04g00488 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g01807 . . . . . . . . . . . . . . . . . . . Bhi09g02667 . . . Hepe01g2278 Mch11g0825 . Cla11g01532 Cam11g1591 Cec11g1620 Cco11g1621 Clacu11g1750 Cmu11g1566 Cre11g1982 . . Chy07g00650 Cme07g00858
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005441 1 2 1 1 1 0 1 1 0 3 1 1 1 1 1 1 1 3 1 1 1 1 1 1 2 1 1 2 2 2 37