Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1626 ATGCCTTTATTTCCCGAATCACCGTTTTGCTATAACTTCATCAAAGAAGAAAACCTAGAAAAGATCACCGGAGCGTCGGGACCAGGATCGGATTCGGAAGCTATTTTGGTTGTTAATCCAATGGCGTCTACTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGCTTCCTCGGGGCTGCTGCAGCTCTTGTTTTCTCATGCATGGGTGCTGCTTATGGGACTGCTAAGAGTGGAGTTGGAGTGGCTTCCATGGGAGTCATGCGACCAGAGCTTGTCATGAAATCTATAGTTCCTGTTGTTATGGCTGGAGTGTTGGGTATCTATGGGTTGATCATCGCTGTTATTATCAGTACCGGAATAAACCCAAAAGCTAAGTCTTACTATTTGTTTGATGGGTATGCACATCTGTCTTCTGGGCTTGCTTGTGGACTTGCTGGTCTCTCTGCTGGAATGGCAATTGGGATTGTTGGTGATGCTGGTGTTCGGGCCAACGCACAACAACCTAAGCTCTTTGTTGGAATGATTCTCATCCTCATCTTTGCCGAGGCTCTTGCCCTCTACGGTCTCATTGTTGGTATCATTCTTTCATCTCGGGCAGGCCAATCTCGTGCAGATTAA 618 47.09 MPLFPESPFCYNFIKEENLEKITGASGPGSDSEAILVVNPMASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29066475 29068666 - CcPI632755_11g016260.1 Cco11g1626 192862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1626 205 Gene3D - 51 202 IPR035921 -
Cco11g1626 205 NCBIfam V-type ATPase subunit C 53 161 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cco11g1626 205 PRINTS Vacuolar ATP synthase 16kDa subunit signature 174 197 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cco11g1626 205 PRINTS Vacuolar ATP synthase 16kDa subunit signature 96 120 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cco11g1626 205 PRINTS Vacuolar ATP synthase 16kDa subunit signature 70 94 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cco11g1626 205 PRINTS Vacuolar ATP synthase 16kDa subunit signature 147 173 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cco11g1626 205 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 43 199 - GO:0016021(PANTHER)
Cco11g1626 205 SUPERFAMILY F1F0 ATP synthase subunit C 127 196 IPR035921 -
Cco11g1626 205 Pfam ATP synthase subunit C 57 116 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cco11g1626 205 Pfam ATP synthase subunit C 137 195 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cco11g1626 205 CDD ATP-synt_Vo_c_ATP6C_rpt1 53 120 - -
Cco11g1626 205 CDD ATP-synt_Vo_c_ATP6C_rpt2 129 196 - -
Cco11g1626 205 SUPERFAMILY F1F0 ATP synthase subunit C 54 117 IPR035921 -
Cco11g1626 205 FunFam V-type proton ATPase proteolipid subunit 51 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1616 Cco-Chr8:27686025 Cco11g1626 Cco-Chr11:29066475 3.00E-75 dispersed
Cco08g1617 Cco-Chr8:27690384 Cco11g1626 Cco-Chr11:29066475 3.00E-75 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1626 K02155 - ath:AT1G19910 287.345