Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1626 | ATGCCTTTATTTCCCGAATCACCGTTTTGCTATAACTTCATCAAAGAAGAAAACCTAGAAAAGATCACCGGAGCGTCGGGACCAGGATCGGATTCGGAAGCTATTTTGGTTGTTAATCCAATGGCGTCTACTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGCTTCCTCGGGGCTGCTGCAGCTCTTGTTTTCTCATGCATGGGTGCTGCTTATGGGACTGCTAAGAGTGGAGTTGGAGTGGCTTCCATGGGAGTCATGCGACCAGAGCTTGTCATGAAATCTATAGTTCCTGTTGTTATGGCTGGAGTGTTGGGTATCTATGGGTTGATCATCGCTGTTATTATCAGTACCGGAATAAACCCAAAAGCTAAGTCTTACTATTTGTTTGATGGGTATGCACATCTGTCTTCTGGGCTTGCTTGTGGACTTGCTGGTCTCTCTGCTGGAATGGCAATTGGGATTGTTGGTGATGCTGGTGTTCGGGCCAACGCACAACAACCTAAGCTCTTTGTTGGAATGATTCTCATCCTCATCTTTGCCGAGGCTCTTGCCCTCTACGGTCTCATTGTTGGTATCATTCTTTCATCTCGGGCAGGCCAATCTCGTGCAGATTAA | 618 | 47.09 | MPLFPESPFCYNFIKEENLEKITGASGPGSDSEAILVVNPMASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD | 205 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 29066475 | 29068666 | - | CcPI632755_11g016260.1 | Cco11g1626 | 192862 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1626 | 205 | Gene3D | - | 51 | 202 | IPR035921 | - | |
Cco11g1626 | 205 | NCBIfam | V-type ATPase subunit C | 53 | 161 | IPR011555 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cco11g1626 | 205 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 174 | 197 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cco11g1626 | 205 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 96 | 120 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cco11g1626 | 205 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 70 | 94 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cco11g1626 | 205 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 147 | 173 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cco11g1626 | 205 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 43 | 199 | - | GO:0016021(PANTHER) | |
Cco11g1626 | 205 | SUPERFAMILY | F1F0 ATP synthase subunit C | 127 | 196 | IPR035921 | - | |
Cco11g1626 | 205 | Pfam | ATP synthase subunit C | 57 | 116 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
Cco11g1626 | 205 | Pfam | ATP synthase subunit C | 137 | 195 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
Cco11g1626 | 205 | CDD | ATP-synt_Vo_c_ATP6C_rpt1 | 53 | 120 | - | - | |
Cco11g1626 | 205 | CDD | ATP-synt_Vo_c_ATP6C_rpt2 | 129 | 196 | - | - | |
Cco11g1626 | 205 | SUPERFAMILY | F1F0 ATP synthase subunit C | 54 | 117 | IPR035921 | - | |
Cco11g1626 | 205 | FunFam | V-type proton ATPase proteolipid subunit | 51 | 202 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g1616 | Cco-Chr8:27686025 | Cco11g1626 | Cco-Chr11:29066475 | 3.00E-75 | dispersed | |
Cco08g1617 | Cco-Chr8:27690384 | Cco11g1626 | Cco-Chr11:29066475 | 3.00E-75 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1626 | K02155 | - | ath:AT1G19910 | 287.345 |