Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1635 ATGGCGGAGATAGCGGTGTTCGACGGAGAAGCGGCGGAGCTGAGGGAGAGCTATAATTCCGGCAAAACGAGAAGCTACGAATGGAGAGTGAATCAATTGAAGAATCTGTTGAAATTGGTTTGTGAAAACGAAGAAGAGATGGTTCAAACCGTTCATTCCGATCTTTATAAACCCGAATTTGAAGCCTTCGCTCATGAGATAGCTCTATTAAAAGGTTCGTGTAAATTGGCACTTAAAGAACTCAGGCGTTGGATGGCACCAGAAAAGGTTAAAACTTCAATTACCACATTTCCTTCGTCTGGAGCAATTGTTCCAGAACCTTTCGGTGTCGTCCTTATCATATCTGCTTGGAATTATCCATTCTTGTTATCTCTCGATCCAGTTGTTGGAGCAATAGCAGCTGGCAATGCTGTGGTTCTAAAGCCATCAGAAATTTCCCCAAGAACATCATCTTTGATGGCAAAACTTTTGGCGAAATATTTGGATACATCTGCTGTAAAAGTTGTTGAGGGTGCTGTTCCCGAAACTAATGCTTTGCTGGAGCAGAAGTGGGACAAAATATTCTACACAGGCAATGGAAGAGTGGGGCGGATAGTGATGGCAGCTGCTGCCAAGCATCTTACGCCAGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAGTAGTTGATTCAGAAATCAATTTACAAGTTGCGAGTAGGCGGATTATAGCTGGCAAGTGGGGTTGTAACAATGGACAAGCATGCATTGCTCCTGATTATATCATAACACCGAAAGAATTTGCTCCAAAATTGGTGGAGTCTCTTAAACAAGAACTGGAGAGATTTTATGGAAAGAATCCGTTGGAAACTAAAGATTTATCTCGCATTGTGAACGCGAAACACTTTGATCGCTTGACAAGGCTCTTAGATGATGATAAAGTTTCTGGCAAGATCGTGCATGGAGGTGAAAAGGACAAAACGAAGCTACAGATTGCTCCCACCCTCTTATTGGATGTCCCTCGAGACTCACTAATTATGACGGAGGAGATATTTGGTCCCCTACTTCCCATTCTCACGGTTGACAAGGTGGAGGACAGCTTCGAAATAGTGAACTCGGGCACAAAGCCACTTGCAGCATATTTATTTACTAACAACAAGAAGCTCAAGGAACGTTTCGTGGCTTGTATCTCTGCAGGGGGTGTGGCCATCAATGAAACCGCCTTACATCTGACGATTAGCACGTTACCGTTCGGAGGAGTTGGAGAGAGTGGAATGGGAGCTTACCATGGAAAGTTCTCCTTTGATGCATTTAGCCATAAGAAGGCCGTTCTTTATCGAAGTTTCGCAGGTGATGCGCCGATGAGATATCCGCCATACACAAAGGGAAAGCTCAGAATTCTCAAGGCTCTTCTTGGAGGTGGCATATTGGGACTCATTCGTGCCTTACTTGGTTGGTCTTAA 1440 44.1 MAEIAVFDGEAAELRESYNSGKTRSYEWRVNQLKNLLKLVCENEEEMVQTVHSDLYKPEFEAFAHEIALLKGSCKLALKELRRWMAPEKVKTSITTFPSSGAIVPEPFGVVLIISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEISPRTSSLMAKLLAKYLDTSAVKVVEGAVPETNALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSEINLQVASRRIIAGKWGCNNGQACIAPDYIITPKEFAPKLVESLKQELERFYGKNPLETKDLSRIVNAKHFDRLTRLLDDDKVSGKIVHGGEKDKTKLQIAPTLLLDVPRDSLIMTEEIFGPLLPILTVDKVEDSFEIVNSGTKPLAAYLFTNNKKLKERFVACISAGGVAINETALHLTISTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYRSFAGDAPMRYPPYTKGKLRILKALLGGGILGLIRALLGWS 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29176048 29182934 + CcPI632755_11g016350.1 Cco11g1635 192871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1635 479 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 216 416 IPR016163 GO:0016620(InterPro)
Cco11g1635 479 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 212 219 IPR029510 GO:0016491(InterPro)
Cco11g1635 479 PIRSF ALDH 2 469 IPR012394 GO:0006081(InterPro)
Cco11g1635 479 FunFam Aldehyde dehydrogenase 216 416 - -
Cco11g1635 479 CDD ALDH_F3FHI 12 438 - -
Cco11g1635 479 Pfam Aldehyde dehydrogenase family 22 436 IPR015590 GO:0016491(InterPro)
Cco11g1635 479 SUPERFAMILY ALDH-like 14 452 IPR016161 GO:0016491(InterPro)
Cco11g1635 479 PANTHER ALDEHYDE DEHYDROGENASE 11 477 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(PANTHER)|GO:0006081(InterPro)
Cco11g1635 479 FunFam Aldehyde dehydrogenase 15 219 - -
Cco11g1635 479 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 15 434 IPR016162 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1635 K00128 - - csv:101219329 863.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1872 Cco-Chr6:28937996 Cco11g1635 Cco-Chr11:29176048 1.50E-38 dispersed
Cco07g0963 Cco-Chr7:22301173 Cco11g1635 Cco-Chr11:29176048 9.80E-135 dispersed
Cco11g1635 Cco-Chr11:29176048 Cco11g1636 Cco-Chr11:29186507 1.90E-231 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco06g1169 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.8 1.6e-212 735.7
Cco02g1789 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.5 5.1e-158 554.7
Cco06g1894 . 67 551 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 1.7e-153 539.7
Cco06g1894 . 1 551 Aldehyde Dehydrogenase Gene Family AT3G48000 75.9 1.0e-249 859.4
Cco02g1789 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.1 8.2e-247 849.7
Cco06g1169 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.1 1.4e-161 566.6
Cco02g1789 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 77.2 1.6e-170 595.9
Cco06g1894 . 46 395 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 3.5e-165 578.2
Cco06g1169 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 55.0 2.9e-103 372.5
Cco11g1635 . 13 479 Aldehyde Dehydrogenase Gene Family AT4G34240 64.5 3.0e-180 628.6
Cco11g1636 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.2 6.9e-177 617.5
Cco11g1635 . 67 477 Aldehyde Dehydrogenase Gene Family AT1G44170 71.8 3.2e-177 618.2
Cco11g1636 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.3 1.2e-176 616.3
Cco02g2482 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.2 1.4e-116 416.8
Cco07g0963 . 21 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.5 1.1e-184 643.3
Cco02g2482 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 1.3e-158 556.6
Cco02g2007 . 37 654 Aldehyde Dehydrogenase Gene Family AT1G79440 60.9 5.7e-208 720.7
Cco09g1819 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 3.7e-240 827.8
Cco04g1587 . 262 696 Aldehyde Dehydrogenase Gene Family AT2G14170 68.5 4.6e-182 634.8
Cco06g1872 . 1 499 Aldehyde Dehydrogenase Gene Family AT1G74920 81.2 5.3e-248 853.6
Cco06g1872 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G48170 80.7 6.3e-249 856.7
Cco02g1833 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 9.4e-269 922.5
Cco01g1581 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.4 5.5e-262 900.2
Cco06g0462 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.1 7.2e-276 946.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002493 2 3 2 2 2 0 3 2 0 2 1 2 3 2 2 3 2 3 3 2 1 1 1 1 1 2 1 3 2 2 56