Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1636 ATGTCGGAAACGAAGGTGTTTGATGCGGCGGCGGCGACGGAATTGGTGAAGGAACTGAGAGGTAGTTTTGGCTCCGGCAACACTCGGAGCTACGAGTGGAGAGTGGCGCAGCTTGAGAGTCTCTTGAAGCTCAGCGTTGACCATGAGGAAGATATTTGCGATGCGCTTCGCTCTGACCTCTCCAAGCCTGCGTTGGAATCCGTTATTCATGAGATATCTATGGTAAAAAGTTCGTGTAAATTGGCACTTAAAGAACTCAGAAATTGGATGACACCAGAGAAGGTTCAAACTACGATTACCAGTTTTCCTTCGTCTGCTGCAATTGTACCAGAACCTTTGGGTGTTGTGCTGATCATCTCCGCTTGGAATTATCCATTCTATTTATCTCTTGATCCAGTTGTTGGAGCAATAGCAGCTGGTAATGCTGTGGTTCTAAAGCCATCAGAAATTTCTCCAGCAACAGCATCTTTAATAGCAAAACTTCTTGAGAAGTATTTGGATACGTCTGCTGTAAAAGTTGTTGAGGGTGCTATTCCCGAAACTAGTGCTTTGCTGGAGCAAAAGTGGGACAAAATATTTTACACAGGCAATGGAAGAGTGGGGCGAATAGTGATGGCAGCTGCTGCCAAGCACCTTACGCCAGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAGTAGTTGATTCAAAAATCAATTTACAAGTTGCCTGTAGGCGGATTATATCTGGTAAATGGGGTGGTAACAATGGACAAGCATGTGTTTCTCCTGATTACATCATAACTACGAAAGAATTTGCTCCAAAATTGGTGGAGTCTCTGAAACAAGAACTGGAGAGATTTTATGGAAAGAATCCGTTGGAATCTAAAGATATATCTCGTATTGTGAATGCTAGCCACTTTAATCGCTTGACCAAGCTCTTAGATGATGATGAAGTTTCTAGCAAGATTGTTCATGGAGGTGAAAAGGACAAAACCAAATTACAGATTGCTCCCACCCTCTTATTGGATGTCCCTCGAGACTCTTTGATTATGACGGAGGAGATATTTGGTCCCTTGCTTCCCATTATCACGGTAGACAAATTGGAGGACAGCTTCGAAATAGTGAATTCGGGCTCAAAGCCACTTGCAGCATATTTATTTACCAACAACAAAAAGCTCAAGGAACAGTTCGTGGCTTGTATCTCTGCAGGCGGCGTGGTTATCAATGACACCACCTTACATCTAGCTGTTAGCACACTACCATTTGGAGGAGTAGGGGAGAGTGGAATGGGATCTTGCCATGGGAAGTTTTCATTTGATGCATTTAGCCATAAGAAAGCTGTTCTTTATCGAAGTTTTGTAGGCGACGTGCCGGTGCGATACCCACCTTACACAAACGGAAAGCTTAGATTTCTCAAAGCTCTTCTTGGAGGTGGCATTTTGGAGCTCATTCGTGCCCTTCTTGGTTGGTCGTAA 1455 43.85 MSETKVFDAAAATELVKELRGSFGSGNTRSYEWRVAQLESLLKLSVDHEEDICDALRSDLSKPALESVIHEISMVKSSCKLALKELRNWMTPEKVQTTITSFPSSAAIVPEPLGVVLIISAWNYPFYLSLDPVVGAIAAGNAVVLKPSEISPATASLIAKLLEKYLDTSAVKVVEGAIPETSALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSKINLQVACRRIISGKWGGNNGQACVSPDYIITTKEFAPKLVESLKQELERFYGKNPLESKDISRIVNASHFNRLTKLLDDDEVSSKIVHGGEKDKTKLQIAPTLLLDVPRDSLIMTEEIFGPLLPIITVDKLEDSFEIVNSGSKPLAAYLFTNNKKLKEQFVACISAGGVVINDTTLHLAVSTLPFGGVGESGMGSCHGKFSFDAFSHKKAVLYRSFVGDVPVRYPPYTNGKLRFLKALLGGGILELIRALLGWS 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29186507 29191577 + CcPI632755_11g016360.1 Cco11g1636 192872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1636 484 Pfam Aldehyde dehydrogenase family 8 441 IPR015590 GO:0016491(InterPro)
Cco11g1636 484 FunFam Aldehyde dehydrogenase 20 224 - -
Cco11g1636 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 221 421 IPR016163 GO:0016620(InterPro)
Cco11g1636 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 21 439 IPR016162 GO:0016491(InterPro)
Cco11g1636 484 PIRSF ALDH 1 476 IPR012394 GO:0006081(InterPro)
Cco11g1636 484 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 217 224 IPR029510 GO:0016491(InterPro)
Cco11g1636 484 SUPERFAMILY ALDH-like 14 458 IPR016161 GO:0016491(InterPro)
Cco11g1636 484 PANTHER ALDEHYDE DEHYDROGENASE 11 482 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(PANTHER)|GO:0006081(InterPro)
Cco11g1636 484 FunFam Aldehyde dehydrogenase 221 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0105 Cco-Chr9:910377 Cco11g1636 Cco-Chr11:29186507 2.00E-16 dispersed
Cco11g1635 Cco-Chr11:29176048 Cco11g1636 Cco-Chr11:29186507 1.90E-231 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1636 K00128 - csv:101219569 882.863