Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1636 ATGTCGGAAACGAAGGTGTTTGATGCGGCGGCGGCGACGGAATTGGTGAAGGAACTGAGAGGTAGTTTTGGCTCCGGCAACACTCGGAGCTACGAGTGGAGAGTGGCGCAGCTTGAGAGTCTCTTGAAGCTCAGCGTTGACCATGAGGAAGATATTTGCGATGCGCTTCGCTCTGACCTCTCCAAGCCTGCGTTGGAATCCGTTATTCATGAGATATCTATGGTAAAAAGTTCGTGTAAATTGGCACTTAAAGAACTCAGAAATTGGATGACACCAGAGAAGGTTCAAACTACGATTACCAGTTTTCCTTCGTCTGCTGCAATTGTACCAGAACCTTTGGGTGTTGTGCTGATCATCTCCGCTTGGAATTATCCATTCTATTTATCTCTTGATCCAGTTGTTGGAGCAATAGCAGCTGGTAATGCTGTGGTTCTAAAGCCATCAGAAATTTCTCCAGCAACAGCATCTTTAATAGCAAAACTTCTTGAGAAGTATTTGGATACGTCTGCTGTAAAAGTTGTTGAGGGTGCTATTCCCGAAACTAGTGCTTTGCTGGAGCAAAAGTGGGACAAAATATTTTACACAGGCAATGGAAGAGTGGGGCGAATAGTGATGGCAGCTGCTGCCAAGCACCTTACGCCAGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAGTAGTTGATTCAAAAATCAATTTACAAGTTGCCTGTAGGCGGATTATATCTGGTAAATGGGGTGGTAACAATGGACAAGCATGTGTTTCTCCTGATTACATCATAACTACGAAAGAATTTGCTCCAAAATTGGTGGAGTCTCTGAAACAAGAACTGGAGAGATTTTATGGAAAGAATCCGTTGGAATCTAAAGATATATCTCGTATTGTGAATGCTAGCCACTTTAATCGCTTGACCAAGCTCTTAGATGATGATGAAGTTTCTAGCAAGATTGTTCATGGAGGTGAAAAGGACAAAACCAAATTACAGATTGCTCCCACCCTCTTATTGGATGTCCCTCGAGACTCTTTGATTATGACGGAGGAGATATTTGGTCCCTTGCTTCCCATTATCACGGTAGACAAATTGGAGGACAGCTTCGAAATAGTGAATTCGGGCTCAAAGCCACTTGCAGCATATTTATTTACCAACAACAAAAAGCTCAAGGAACAGTTCGTGGCTTGTATCTCTGCAGGCGGCGTGGTTATCAATGACACCACCTTACATCTAGCTGTTAGCACACTACCATTTGGAGGAGTAGGGGAGAGTGGAATGGGATCTTGCCATGGGAAGTTTTCATTTGATGCATTTAGCCATAAGAAAGCTGTTCTTTATCGAAGTTTTGTAGGCGACGTGCCGGTGCGATACCCACCTTACACAAACGGAAAGCTTAGATTTCTCAAAGCTCTTCTTGGAGGTGGCATTTTGGAGCTCATTCGTGCCCTTCTTGGTTGGTCGTAA 1455 43.85 MSETKVFDAAAATELVKELRGSFGSGNTRSYEWRVAQLESLLKLSVDHEEDICDALRSDLSKPALESVIHEISMVKSSCKLALKELRNWMTPEKVQTTITSFPSSAAIVPEPLGVVLIISAWNYPFYLSLDPVVGAIAAGNAVVLKPSEISPATASLIAKLLEKYLDTSAVKVVEGAIPETSALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSKINLQVACRRIISGKWGGNNGQACVSPDYIITTKEFAPKLVESLKQELERFYGKNPLESKDISRIVNASHFNRLTKLLDDDEVSSKIVHGGEKDKTKLQIAPTLLLDVPRDSLIMTEEIFGPLLPIITVDKLEDSFEIVNSGSKPLAAYLFTNNKKLKEQFVACISAGGVVINDTTLHLAVSTLPFGGVGESGMGSCHGKFSFDAFSHKKAVLYRSFVGDVPVRYPPYTNGKLRFLKALLGGGILELIRALLGWS 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29186507 29191577 + CcPI632755_11g016360.1 Cco11g1636 192872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1636 484 Pfam Aldehyde dehydrogenase family 8 441 IPR015590 GO:0016491(InterPro)
Cco11g1636 484 FunFam Aldehyde dehydrogenase 20 224 - -
Cco11g1636 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 221 421 IPR016163 GO:0016620(InterPro)
Cco11g1636 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 21 439 IPR016162 GO:0016491(InterPro)
Cco11g1636 484 PIRSF ALDH 1 476 IPR012394 GO:0006081(InterPro)
Cco11g1636 484 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 217 224 IPR029510 GO:0016491(InterPro)
Cco11g1636 484 SUPERFAMILY ALDH-like 14 458 IPR016161 GO:0016491(InterPro)
Cco11g1636 484 PANTHER ALDEHYDE DEHYDROGENASE 11 482 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(PANTHER)|GO:0006081(InterPro)
Cco11g1636 484 FunFam Aldehyde dehydrogenase 221 421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1636 K00128 - - csv:101219569 882.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0105 Cco-Chr9:910377 Cco11g1636 Cco-Chr11:29186507 2.00E-16 dispersed
Cco11g1635 Cco-Chr11:29176048 Cco11g1636 Cco-Chr11:29186507 1.90E-231 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g247 . Blo12g01125 . Bda03g00014 . Bpe04g00009 Bma04g00013 . . . Cma01g01383 Cma09g00785 . . . Cpe06g00619 . . . . . . . . . . . . . . . Cone4ag1417 Cone7ag1521 . . Lsi04g02401 Csa04g01789 . . . . . . . . . . . Cmo01g01433 Cmo09g00776 . . . Car09g00694 . Cpe02g00556 Bhi09g02693 . . . Hepe01g2295 Mch11g0839 . Cla11g01542 Cam11g1605 Cec11g1633 Cco11g1636 Clacu11g1762 Cmu11g1578 Cre11g1996 . . Chy07g00628 Cme07g00835
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco06g1169 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.8 1.6e-212 735.7
Cco02g1789 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.5 5.1e-158 554.7
Cco06g1894 . 67 551 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 1.7e-153 539.7
Cco06g1894 . 1 551 Aldehyde Dehydrogenase Gene Family AT3G48000 75.9 1.0e-249 859.4
Cco02g1789 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.1 8.2e-247 849.7
Cco06g1169 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.1 1.4e-161 566.6
Cco02g1789 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 77.2 1.6e-170 595.9
Cco06g1894 . 46 395 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 3.5e-165 578.2
Cco06g1169 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 55.0 2.9e-103 372.5
Cco11g1635 . 13 479 Aldehyde Dehydrogenase Gene Family AT4G34240 64.5 3.0e-180 628.6
Cco11g1636 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.2 6.9e-177 617.5
Cco11g1635 . 67 477 Aldehyde Dehydrogenase Gene Family AT1G44170 71.8 3.2e-177 618.2
Cco11g1636 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.3 1.2e-176 616.3
Cco02g2482 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.2 1.4e-116 416.8
Cco07g0963 . 21 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.5 1.1e-184 643.3
Cco02g2482 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 1.3e-158 556.6
Cco02g2007 . 37 654 Aldehyde Dehydrogenase Gene Family AT1G79440 60.9 5.7e-208 720.7
Cco09g1819 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 3.7e-240 827.8
Cco04g1587 . 262 696 Aldehyde Dehydrogenase Gene Family AT2G14170 68.5 4.6e-182 634.8
Cco06g1872 . 1 499 Aldehyde Dehydrogenase Gene Family AT1G74920 81.2 5.3e-248 853.6
Cco06g1872 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G48170 80.7 6.3e-249 856.7
Cco02g1833 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 9.4e-269 922.5
Cco01g1581 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.4 5.5e-262 900.2
Cco06g0462 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.1 7.2e-276 946.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002493 2 3 2 2 2 0 3 2 0 2 1 2 3 2 2 3 2 3 3 2 1 1 1 1 1 2 1 3 2 2 56