Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1642 ATGCCACCTTCCCCTTCCTTCCCATCTGGGTCTCGTGGAAAATGGAGGAAAAAGAAGAGGGATTCGCAAATTGGCCGCAGAAACAACTACGCCAACAATAATAACAACGGAATCAACAGGCATGAAGATGAGGATGAAGATGAAGACCTTGCTGCTGCTGAAAATGAGGAAATGGAACGTGATAACAACGATGATTCTGAGGACCCTCAGATTACCCTTCACTCCACGCCCAATTCCACTATTCAGGAGACTGAACTTCTGTCGGATGATAAAGTTCGAGTCTCCGAGTTTCCTCAGGTCATTAAGCGGGTTGTCACTCGGCCTCACTCTTCTGTGTTGGCTGTTATGGCAATGGAGAGGACAAATCAGTACGGAGAGAGTAAGGGGATGTCTGGAAATTCCTTGATTTTGGAGAATGTGTCTTATGGGCAACTCCAGGCACTGTCTGCTATGCCCGCGGATAGTCCGGCTTTGCTGGATCAGGAGAGGGCGGAGGCTGGGAACGCCGCGTATGTAATAACTCCACCACCGATTATGGAAGGGCGTGGCGTGGTTAAGAGGTTTGGGAGTAGGGTACATGTCGTTCCCATGCACTCAGATTGGTTTTCACCCGCCACGGTGCATCGACTTGAGAGACAAGTTGTTCCACATTTTTTCTCTGGGAAATTGCCCGACCACACTCCTGAAAAGTATATGGAGATTCGAAATTTTGTTGTTGCCAAATACATGGAGAATCCCGAGAAAAGGGTCACAGTTTTGGACTGCCAAGGATTGGTTGATGGTGTTAGTAATGAAGATTTAACTCGAATTGTTCGGTTTCTTGATCATTGGGGTATTATTAATTATTGTGCTCCTACACCTAGCTGTGAACCATGGAATAGCAGTTCATACTTGAGAGAAGATATGAATGGTGAGATTCACGTGCCATCAGCTGCTTTGAAGCCTATTGATAGCTTGGTCAAATTTGACAAACCAAAATGTAGGCTCAAGACGGCTGATGTCTATTCAGCACTTCCATGCCACGATGACATTGATGGTTTGTGTGATTTGGATAACAGAATTCGAGAGCGTCTAGCTGAAAATCATTGTAGCTCTTGTTCTCGGTCTGTTCCGATTGCATACTACCAATCACAGAAGGAGGTTGATGTTTTACTTTGCTCTGACTGCTTCCATGAAGGCAAATATGTTGCTGGCCATTCAAGCATTGATTTTCTGAGGGTGGACATGGCGAAAGATTATGGTGAACTAGATAGTGAAAACTGGACTGATCAAGAAACTCTATTGCTTTTAGAGGCAATAGAATTGTATAATGAGAATTGGAATGAAATTACCGAACATGTTGGGTCCAAGTCTAAAGCTCAATGCATTATACATTTTCTTCGTCTATCAGTGGAGGATGGCCTTCTAGAAAACGTTGATGTGCCTGGGGTTTCTCTCTCATCAAATTCTTCACATGGAGAAGATAATGAGAAGTCGCGTTCAAAGATGAATGGAAACATAGCAGGATCTTCCTCTCAAGAGAATAAAGAGATGCATGATAGGCTTCCCTTTGCCAATTCTGGGAACCCAGTCATGGCGTTGGTTGCTTTTCTCGCATCGGCTATTGGACCAAGAGTTGCTGCATCTTGTGCTCATGCATCCTTAGCTGCATTATCTGAGGACAGTGTAGCTTCTTCTGGGAGCATCTTTCAGATGGAGGGTTCTGTAAACGCTAATAATAGGACGAATGTGGACATCAAACAAGTCAGAGACGGAGGCTCCTTTGGAGAACATCCAAACTCAATCGATCAAAAAGATGAGAACAAGGCAGAGACAGAAGCTACACTATTATCTTCTGAAAGAGTTAAAGTTGCAGCAAAAGCAGGCCTTGCTGCCTCTGCAACAAAGGCGAAGTTGTTTGCTGACCATGAAGAACGAGAAATCCAACGATTGTCTGCTAATATTATAAATCATCAGTTAAAAAGACTGGAGCTGAAGCTGAAGCAGTTTGCGGAAGTAGAAACCTTCTTGATGAAGGAATGCGAACAAGTTGAGAGGACAAGGCAGAGGTTTGTCGCAGAGCGAGCAAGAATGTTAGGTGTTCAATTTGGGCCTGCTGGAGTTACGCCACCTGCGAGTTTACCAGGCGTTATCCCTTCCATGGTAAACAACAGCAACACAAACAATAGGCAGAATATGATCTCACCTCCAGCTTCACAGCCGAGCGTTTCGGGGTATAGCAACAACCAACCACTTCACCCCCACATGTCATACATGCCCCGACAGTCAATGTTTGGTTTGGGACAAAGGCTACCCTTATCGGCAATTCAGCAGCAGCAGCCGCCGCCGCCCTCCACCTCTTCTTCTAATCCCATGTTCAATGGTCCAAGCAATGCACAGCCTTCTCTCAGTCACCCAATGATGAGGCCAGTTACTGGATCCAGCTCTGGATTAGGGTGA 2439 45.43 MPPSPSFPSGSRGKWRKKKRDSQIGRRNNYANNNNNGINRHEDEDEDEDLAAAENEEMERDNNDDSEDPQITLHSTPNSTIQETELLSDDKVRVSEFPQVIKRVVTRPHSSVLAVMAMERTNQYGESKGMSGNSLILENVSYGQLQALSAMPADSPALLDQERAEAGNAAYVITPPPIMEGRGVVKRFGSRVHVVPMHSDWFSPATVHRLERQVVPHFFSGKLPDHTPEKYMEIRNFVVAKYMENPEKRVTVLDCQGLVDGVSNEDLTRIVRFLDHWGIINYCAPTPSCEPWNSSSYLREDMNGEIHVPSAALKPIDSLVKFDKPKCRLKTADVYSALPCHDDIDGLCDLDNRIRERLAENHCSSCSRSVPIAYYQSQKEVDVLLCSDCFHEGKYVAGHSSIDFLRVDMAKDYGELDSENWTDQETLLLLEAIELYNENWNEITEHVGSKSKAQCIIHFLRLSVEDGLLENVDVPGVSLSSNSSHGEDNEKSRSKMNGNIAGSSSQENKEMHDRLPFANSGNPVMALVAFLASAIGPRVAASCAHASLAALSEDSVASSGSIFQMEGSVNANNRTNVDIKQVRDGGSFGEHPNSIDQKDENKAETEATLLSSERVKVAAKAGLAASATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMKECEQVERTRQRFVAERARMLGVQFGPAGVTPPASLPGVIPSMVNNSNTNNRQNMISPPASQPSVSGYSNNQPLHPHMSYMPRQSMFGLGQRLPLSAIQQQQPPPPSTSSSNPMFNGPSNAQPSLSHPMMRPVTGSSSGLG 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29252665 29258815 + CcPI632755_11g016420.1 Cco11g1642 192878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1642 812 Pfam SWIRM domain 203 282 IPR007526 GO:0005515(InterPro)
Cco11g1642 812 CDD SANT 420 462 IPR001005 -
Cco11g1642 812 MobiDBLite consensus disorder prediction 717 749 - -
Cco11g1642 812 FunFam SWI/SNF complex subunit SMARCC2 isoform c 199 287 - -
Cco11g1642 812 Pfam SWIRM-associated region 1 621 691 IPR032451 -
Cco11g1642 812 SUPERFAMILY Homeodomain-like 418 467 IPR009057 -
Cco11g1642 812 Gene3D - 417 467 - -
Cco11g1642 812 MobiDBLite consensus disorder prediction 783 812 - -
Cco11g1642 812 ProSiteProfiles SWIRM domain profile. 193 291 IPR007526 GO:0005515(InterPro)
Cco11g1642 812 ProSiteProfiles Myb-like domain profile. 413 463 IPR001005 -
Cco11g1642 812 MobiDBLite consensus disorder prediction 769 812 - -
Cco11g1642 812 SUPERFAMILY Homeodomain-like 192 290 IPR009057 -
Cco11g1642 812 MobiDBLite consensus disorder prediction 717 753 - -
Cco11g1642 812 FunFam SWI/SNF complex subunit SMARCC2 isoform C 417 467 - -
Cco11g1642 812 MobiDBLite consensus disorder prediction 42 64 - -
Cco11g1642 812 MobiDBLite consensus disorder prediction 1 81 - -
Cco11g1642 812 SMART sant 417 465 IPR001005 -
Cco11g1642 812 Coils Coil 634 654 - -
Cco11g1642 812 Pfam Myb-like DNA-binding domain 419 461 IPR001005 -
Cco11g1642 812 Gene3D - 199 286 IPR036388 -
Cco11g1642 812 ProSiteProfiles SANT domain profile. 416 467 IPR017884 -
Cco11g1642 812 PANTHER SWI/SNF COMPLEX-RELATED 212 725 - -
Cco11g1642 812 MobiDBLite consensus disorder prediction 582 604 - -
Cco11g1642 812 MobiDBLite consensus disorder prediction 479 511 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1642 K11649 - - csv:101220514 1441.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0555 Cco-Chr2:5301823 Cco11g1642 Cco-Chr11:29252665 1.30E-51 dispersed
Cco09g1103 Cco-Chr9:10592656 Cco11g1642 Cco-Chr11:29252665 1.60E-07 dispersed
Cco11g1642 Cco-Chr11:29252665 Cco11g1963 Cco-Chr11:32114215 4.40E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g235 . Blo12g01124 . Bda03g00015 . Bpe04g00010 Bma04g00014 . . . Cma01g01377 Cma09g00777 . . . Cpe06g00612 . . . . . . . . . . . . . . . . . . Cone20ag0433 Lsi04g02409 Csa04g01782 . . . . . . . . . . Sed06g0997 Cmo01g01428 Cmo09g00769 . . . Car09g00686 . Cpe02g00561 Bhi09g02703 Tan01g4053 Cmetu07g1927 . Hepe01g1595 Mch11g0847 . Cla11g01548 Cam11g1612 Cec11g1641 Cco11g1642 Clacu11g1770 Cmu11g1587 Cre11g2004 . . Chy07g00621 Cme07g00826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005902 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 37