Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1646 ATGGCGCCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATATCGACCGAAGCAAGTGAAAGATGTGGCGTATCAGGATGAAGTGGTTCGGGTCCTCACCAACACCCTCGAGACTGCTAGTTGTCCCCATATGCTCTTCTATGGACCGCCTGGTACCGGAAAAACCACCACCGCTCTCGCAATTTCTCACCAACTATTCGGTCCCGAACTTTACAAGTCCAGAGTTTTAGAGTTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATAAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGCCAAGGGGGTTACCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACGGAAGATGCTCAGAATGCTCTGAGGCGTACCATGGAAACGCACTCTAAAGTGACACGCTTCTTTTTTATATGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCAAGGTGTGCAAAGTTTAGGTTTAAGCCACTCTCTGAAGAAGTTATGAGCAAGCGTATATTGCATATTAGTAATGAAGAAGGTCTTAGTCTAGATGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGTCAGCAGCACGCTTATTTGGTTCATCGATCTCTTCCAAGGATTTGATTAGTGTGTCTGGGATTATCCCTCGGGAGGTTGTTGATGCACTTTTCACTGCTTGTAAAAGTGGTAACTTTGATATTGCAAACAAGGAAGTCAACAATGTGCTTGCAGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAGGTGGTTGTTGAAGACAATGATTTGCAAGATGAACAGAAGGCCAAGATATGCAAGAAGTTGGCCGAAGCAGACAAGTGTCTCGTCGATGGCGCGGATGAATATTTGCAACTGCTCGATGTGGTTAGTCAAATGATGCAAGCTTTAAGCAGTATGCAATCGTAA 1011 44.51 MAPLLQSSQPWVEKYRPKQVKDVAYQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDALFTACKSGNFDIANKEVNNVLAEGYPVAQMLSQIFEVVVEDNDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQMMQALSSMQS 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29319839 29324778 + CcPI632755_11g016460.1 Cco11g1646 192882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1646 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
Cco11g1646 336 SUPERFAMILY post-AAA+ oligomerization domain-like 240 329 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cco11g1646 336 CDD AAA 26 166 - -
Cco11g1646 336 FunFam Replication factor C subunit 5 3 174 - -
Cco11g1646 336 Gene3D - 3 173 IPR027417 -
Cco11g1646 336 FunFam Replication factor C subunit 4 240 329 - -
Cco11g1646 336 FunFam Replication factor C subunit 4 176 239 - -
Cco11g1646 336 Gene3D - 240 330 - -
Cco11g1646 336 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 9 332 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cco11g1646 336 Pfam Replication factor C C-terminal domain 241 325 IPR013748 -
Cco11g1646 336 Pfam RCF1/5-like, AAA+ ATPase lid domain 185 222 - -
Cco11g1646 336 Pfam ATPase family associated with various cellular activities (AAA) 45 173 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco11g1646 336 SMART AAA_5 41 174 IPR003593 GO:0016887(InterPro)
Cco11g1646 336 CDD HLD_clamp_RFC 174 233 IPR047854 -
Cco11g1646 336 Gene3D - 176 239 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1646 K10755 - - csv:101221224 617.461
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0353 Cco-Chr10:4078359 Cco11g1646 Cco-Chr11:29319839 3.60E-51 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g0051 . 106 692 Core DNA Replication Machinery Family AT4G14700 65.4 1.5e-220 763.1
Cco08g0051 . 20 692 Core DNA Replication Machinery Family AT4G12620 61.6 4.0e-229 791.6
Cco08g1757 . 65 436 Core DNA Replication Machinery Family AT2G37560 57.3 2.2e-123 439.1
Cco07g0493 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.8 3.5e-152 535.0
Cco06g0369 . 3 534 Core DNA Replication Machinery Family AT4G29910 56.9 3.3e-169 592.0
Cco11g0902 . 1 254 Core DNA Replication Machinery Family AT1G26840 68.5 3.6e-92 335.1
Cco09g2466 . 68 864 Core DNA Replication Machinery Family AT1G79150 58.7 1.4e-248 856.3
Cco10g1289 . 8 939 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1348.6
Cco04g2230 . 102 676 Core DNA Replication Machinery Family AT5G46280 80.9 1.8e-268 921.8
Cco02g0511 . 1 845 Core DNA Replication Machinery Family AT2G16440 75.9 0.0e+00 1146.3
Cco11g0380 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.1
Cco04g2395 . 7 818 Core DNA Replication Machinery Family AT5G44635 71.9 0.0e+00 1153.7
Cco09g0502 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cco02g2101 . 55 521 Core DNA Replication Machinery Family AT2G29680 62.1 3.1e-163 572.0
Cco02g2101 . 37 482 Core DNA Replication Machinery Family AT1G07270 59.2 7.5e-143 504.2
Cco09g0862 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 1.2e-257 885.9
Cco10g2049 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.5 0.0e+00 1078.2
Cco09g1753 . 44 464 Core DNA Replication Machinery Family AT2G14050 82.4 4.2e-197 684.9
Cco09g1752 . 9 237 Core DNA Replication Machinery Family AT2G14050 69.0 7.9e-87 318.5
Cco02g1292 . 1955 2365 Core DNA Replication Machinery Family AT2G20980 56.1 7.0e-118 421.0
Cco09g0260 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 2.3e-72 268.9
Cco11g0627 . 1 184 Core DNA Replication Machinery Family AT1G19080 69.0 3.9e-71 264.6
Cco11g0627 . 1 184 Core DNA Replication Machinery Family AT3G55490 69.0 3.9e-71 264.6
Cco05g0179 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 8.8e-50 193.7
Cco02g1335 . 1 1521 Core DNA Replication Machinery Family AT5G67100 59.0 0.0e+00 1711.8
Cco06g0207 . 1 446 Core DNA Replication Machinery Family AT1G67320 63.6 4.2e-181 631.3
Cco08g0215 . 144 587 Core DNA Replication Machinery Family AT5G41880 65.0 2.9e-176 615.1
Cco04g1267 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.6 0.0e+00 1794.6
Cco10g1734 . 1 441 Core DNA Replication Machinery Family AT2G42120 72.1 1.6e-192 669.1
Cco06g0207 . 1 446 Core DNA Replication Machinery Family AT1G67320 63.6 4.2e-181 631.3
Cco01g0571 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.0 3.2e-37 151.4
Cco02g2358 . 1 1866 Core DNA Replication Machinery Family AT1G08260 74.8 0.0e+00 2799.6
Cco09g2253 . 1 1999 Core DNA Replication Machinery Family AT1G08260 69.1 0.0e+00 2770.3
Cco09g2253 . 1 2090 Core DNA Replication Machinery Family AT2G27120 66.0 0.0e+00 2739.1
Cco02g2358 . 25 1861 Core DNA Replication Machinery Family AT2G27120 71.9 0.0e+00 2632.4
Cco01g1863 . 7 496 Core DNA Replication Machinery Family AT5G22110 63.0 4.9e-169 591.3
Cco02g2410 . 108 1032 Core DNA Replication Machinery Family AT5G22010 63.3 2.4e-307 1051.6
Cco10g0353 . 3 332 Core DNA Replication Machinery Family AT1G63160 91.5 2.2e-173 605.1
Cco04g0633 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.1e-178 622.9
Cco11g1646 . 1 334 Core DNA Replication Machinery Family AT1G21690 82.1 3.3e-153 538.1
Cco08g0722 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.3 4.6e-156 547.7
Cco11g0176 . 26 607 Core DNA Replication Machinery Family AT2G06510 68.0 4.0e-245 844.3
Cco10g0112 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.1 2.4e-194 675.6
Cco06g1757 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.3 2.9e-248 854.7
Cco10g0112 . 10 812 Core DNA Replication Machinery Family AT5G45400 50.5 2.8e-225 778.9
Cco06g1757 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 3.0e-240 828.2
Cco10g0112 . 5 798 Core DNA Replication Machinery Family AT4G19130 53.5 1.1e-223 773.5
Cco03g1856 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.7 2.7e-189 658.3
Cco05g0323 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.4 6.2e-299 1023.8
Cco07g1648 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 2.3e-115 412.1
Cco02g2308 . 2 762 Core DNA Replication Machinery Family AT1G08130 68.8 4.8e-296 1013.8
Cco02g2308 . 162 762 Core DNA Replication Machinery Family AT1G49250 68.6 1.1e-240 829.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010443 1 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 1 1 1 1 29