Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1648 GAGCGCAAGGAGATTGAAAAGCTTATCTTGCAAAATGGTGGAAGATACTCTGCCGATCTTACGAGAAAGTGTGACAAGTACAAGGTTGCACGGACATGGGGCCGTATCAATATTGTTACTCGGAAATGGTTTGATCAGTCCATAGCTAGAAAAGCATGTCTTAATGAGGAGTCCTACCCTGTTGGTAGCATTTCCGGAACTTCAAATAAAATGACGAGGGGCTGCTTGACTGCTCACAATAGCCAAGAAAAGGTTACTGGGAACTTGCAAACTGTACCGTCCTCATTTATTGCTGATTCAAATTTCGCAGCAGTTTCTGGTCCTGGGTTTTCAGATATGGATTTTGAAGCTACTCTTTCACAGAGCACATCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTTCCAGTTGGCATGGGAAAGAACGAAGAAAACACCAATAATTGTATTGCAAATGACTTTCAGTCTGAAGACAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTCAGATGCGAAAGATTGTGAATATGATTCTCAGAGGTGGAGGCTCCAGATACATGTTGTTCAATGACAAATTAACACACATAATAGTTGGAAATCCATCGGAAACGGAGAAAAAGGAGGTTAGAGATATTGCAGCTTCAGGAGTCATTCATGTGGTTAGAACCAACTGGCTAGAAGATTGTGATCGTCAGAAGAAGGAGATCCCTATTCTTAGTAGACACATGGCATATGATGAACTGATTCCTAAAGCATCCAGTAAAACGAGCACCATCGTCATGGATCAGAATAAAGTTCCAAATGTTCATCCAATCATGCCATCAAATGTGTTAGAAGGAAATATTCATGTTAGAATTGGAAAGACATCAATGACAGAGGAAACAATTCGAGAAAAAAGTGAAACAAACGTGAGTGGAGACAGGACCATGAAATTATCCCAGAAAAGCCAACAATGTGTAGCAAATGGTACAAACAAGAGTCAAGAAAAGATGCGGCGTGATTTCGTGGTTCCAAATGGGAAGTCATCGTGTGTGTTTAGGGGAAAAATATTTTGTTTTTCTAGTTCCTTCCCAGAAGATCGGAGAGGTGAAATTGTTGAATGGATAAATCAAGGGGGAGGTGAGGTTGTTGAAGATCGTGTGAAGCAGAAAGTGCACTTCACTGTTGAATGTCATGGTGAGATACCAAGGGGTACAGATGTGCATACTACTTACGTATCAAGTCATTGGGTCCGATCATGTTTAGAGGATGGATGCTTGTGGGATACCAATGGACACATTCTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGTCTGGATTTGAAAAGATACGGTTCTGTGTTTCACAATATGATGATAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGTAAGTTTTCCGATGGGACAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCAGTTACAGCTGAATGGATATATGAATGTGTCAGACAGACTTTTCCACCTGACTGTTCGGTCATTGGTCAAGAACATTCAGAAGCTCCTCCAATTGGTGGTTTATCTAACCAGTGGTCAAAAAGAGCTGAAAGAAAAGAAGACATTAGCAATCCTACTGCTGGAGATGGGAGTGTAGGCATATATGATGGCTTTAGTGAAACACAAACTGACTCTCAGGTTGTGGGTTATGAAGAGGATTTGTCAGGAAGGCAAATGCTCATAGACAGAGTTCGAACCCGGAGTAGCATCACTTGA 1833 40.7 ERKEIEKLILQNGGRYSADLTRKCDKYKVARTWGRINIVTRKWFDQSIARKACLNEESYPVGSISGTSNKMTRGCLTAHNSQEKVTGNLQTVPSSFIADSNFAAVSGPGFSDMDFEATLSQSTSMFSDASHFINEVDVEVPVGMGKNEENTNNCIANDFQSEDNDLYLSACRIKVVGFEASQMRKIVNMILRGGGSRYMLFNDKLTHIIVGNPSETEKKEVRDIAASGVIHVVRTNWLEDCDRQKKEIPILSRHMAYDELIPKASSKTSTIVMDQNKVPNVHPIMPSNVLEGNIHVRIGKTSMTEETIREKSETNVSGDRTMKLSQKSQQCVANGTNKSQEKMRRDFVVPNGKSSCVFRGKIFCFSSSFPEDRRGEIVEWINQGGGEVVEDRVKQKVHFTVECHGEIPRGTDVHTTYVSSHWVRSCLEDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQTFPPDCSVIGQEHSEAPPIGGLSNQWSKRAERKEDISNPTAGDGSVGIYDGFSETQTDSQVVGYEEDLSGRQMLIDRVRTRSSIT 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29336287 29349823 - CcPI632755_11g016480.1 Cco11g1648 192884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1648 610 CDD BRCT_TopBP1_rpt2_like 1 51 - -
Cco11g1648 610 CDD BRCT 456 522 - -
Cco11g1648 610 ProSiteProfiles BRCT domain profile. 163 255 IPR001357 -
Cco11g1648 610 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 1 525 - GO:0006270(PANTHER)|GO:0007095(PANTHER)|GO:0033314(PANTHER)
Cco11g1648 610 SUPERFAMILY BRCT domain 165 249 IPR036420 -
Cco11g1648 610 SUPERFAMILY BRCT domain 1 62 IPR036420 -
Cco11g1648 610 SMART BRCT_7 450 526 IPR001357 -
Cco11g1648 610 SMART BRCT_7 355 430 IPR001357 -
Cco11g1648 610 SMART BRCT_7 165 245 IPR001357 -
Cco11g1648 610 SUPERFAMILY BRCT domain 357 442 IPR036420 -
Cco11g1648 610 Gene3D BRCT domain 1 63 IPR036420 -
Cco11g1648 610 MobiDBLite consensus disorder prediction 542 574 - -
Cco11g1648 610 ProSiteProfiles BRCT domain profile. 1 61 IPR001357 -
Cco11g1648 610 ProSiteProfiles BRCT domain profile. 453 525 IPR001357 -
Cco11g1648 610 SUPERFAMILY BRCT domain 418 526 IPR036420 -
Cco11g1648 610 FunFam Transcription coactivator 145 255 - -
Cco11g1648 610 FunFam Transcription coactivator 351 446 - -
Cco11g1648 610 Gene3D BRCT domain 349 446 IPR036420 -
Cco11g1648 610 MobiDBLite consensus disorder prediction 318 337 - -
Cco11g1648 610 Pfam twin BRCT domain 1 43 IPR001357 -
Cco11g1648 610 Pfam twin BRCT domain 457 518 IPR001357 -
Cco11g1648 610 ProSiteProfiles BRCT domain profile. 353 440 IPR001357 -
Cco11g1648 610 MobiDBLite consensus disorder prediction 312 337 - -
Cco11g1648 610 Gene3D BRCT domain 448 530 IPR036420 -
Cco11g1648 610 Gene3D BRCT domain 144 252 IPR036420 -
Cco11g1648 610 Pfam BRCA1 C Terminus (BRCT) domain 168 241 IPR001357 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1648 K10728 - - csv:101210305 946.036
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g215 . . . . . . . . . . . Cma09g00770 . . . Cpe06g00607 . . . . . . . . . . . . . . . . Cone7ag1503 . . Lsi04g02416 Csa04g01777 . . . . . . . . . . . . Cmo09g00762 . . . Car09g00680 . Cpe02g00570 Bhi09g02711 . . . . Mch11g0853 . Cla11g01556 Cam11g1620 Cec11g1647 Cco11g1648 Clacu11g1777 Cmu11g1593 Cre11g2011 . . Chy07g00604 Cme07g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003479 1 4 1 1 1 0 2 1 0 4 1 1 1 1 1 2 1 1 2 1 7 1 1 1 2 1 1 1 1 1 44