Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1649 ATGAACTCCACCGTCTTCCTCCTCTCCACGCCCTTACCGCCGGCCACAATCCACCGGCTCCGTGCCCCCTCCATATCCGCCTCAAGCTCTCTACCCCACCTCCCGAGCTTGCCCTACCGGAAATCCACTCCCTCTGCTCCCACTCTCTTCGTCCCTAGAAAAAACCCTTTCCGAGTCTTCTCCGACGATGGCGACGGAGATAGCGGTGGCCCTGACGACTACGACATGGACGACGAGGAAATGGAGGAAGTCGACAACAAGAAGGATTTTGACATCGAGTACGATCCTCTAGCCGCGGCCGCAGCTGCAGCAGCGGGTTCCGACGGCGTTGGCGACGAGAATATCTCGATTGTGCAGAGCAAAAGCTTCGTGTCGACGCAGGGGTGGGATTCGGAGATGATTGTGGATTATAGGATAAACGAGGAGGAATTTCATAAGATCAGTTTGCTGCACTGTGATTTTTTCATCAGGAAGCCGCCGGATCCCGACAACGATGTTTATGATTTCAGAGAGATGTATGTTACTCCTCCAGACACTGATGTCTATGCGATCCCTAAAGTTCTTGCTCCAATGCCTCAGAAGTATATTAGATGTGCTCAAAGTGATTATGGATGCTACAATGTCACAGAACCACCCATTGATGCACCTAGAGATCCATTATACAAGTCCGAGAAGGAGGTTCTTAAGGTTTTCTTGACGAAGCACTTCAGAAACCGAAGGGTGCGTGACCCAGAATTTGTCCTAGACTTTGAGGAAATATATGTAATTGATTCAAAAACCAAGTCAATCACCAGGACAAAAGTTTTGGTCACGGTTCCAGGTGGAAGAGATAGGGACAGGAGAAGCGACTTACTCGTAGTTCGGGATAATGGGAACTCTTTCAAGATCATCCATTCGAGTGAACGAGATGATCCGACCACGGTGATAGAGAAAGAAGAATGGACCAAAACTAGACAAGATATGGAGAGACATCTTAGGAAGTTAAGGGACTTCAGCATTTCAAATTGTGATTCTCTGCTTTCTTTATTCTCTATTTTCGTTTTTCACTCCATTCGAACTCGACGGAAGGTTGCCCAAGTAGAGATTGAACCAAAGACCGTTCTAAGCTTTCCCCGTACCAACAAATACTCTCAACATCATCTCTCAGCTTTTTGGATGAGATATAATATGAAGGAAGCTCGACAAAGAACTTATCTTTCTCAAAAGATGGAAAAGGAAAGTGTAAAATTCAAGGCAACAAGTGAAAAATTCAAATCCATGAAGAAAAGACAACTTCCTCATACATGTAGTCGTAAGGGTTATGCTCGATCGGAAGAAGAAATGAAAAAGAGTTGTCCAAGCTCATCTTTGGTGACAAGAGTCGCACTATTGACAAGGGAACACAGGAAAAAGGATGGTAATCACGTTAACTCACAAGTTGCAGAAACACTGGAATCAAGTATGGAAGCAAGAGATACTGTTGCTGAGAAGTGCCATGACTTCATTCAAATGCAAAACGAAAGCGGCATTCTAAACGGTCCACTCGTGAAAGAGGTAGTACCTGTGACCTTACAAGATTGGAGGAAATTGTCTACTAGATTGGAAGATTGGAAGAAATTTTGTGGTCATCAATCCAACCCCGAGATTAGGAGGGGGACATGA 1641 45.4 MNSTVFLLSTPLPPATIHRLRAPSISASSSLPHLPSLPYRKSTPSAPTLFVPRKNPFRVFSDDGDGDSGGPDDYDMDDEEMEEVDNKKDFDIEYDPLAAAAAAAAGSDGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRVRDPEFVLDFEEIYVIDSKTKSITRTKVLVTVPGGRDRDRRSDLLVVRDNGNSFKIIHSSERDDPTTVIEKEEWTKTRQDMERHLRKLRDFSISNCDSLLSLFSIFVFHSIRTRRKVAQVEIEPKTVLSFPRTNKYSQHHLSAFWMRYNMKEARQRTYLSQKMEKESVKFKATSEKFKSMKKRQLPHTCSRKGYARSEEEMKKSCPSSSLVTRVALLTREHRKKDGNHVNSQVAETLESSMEARDTVAEKCHDFIQMQNESGILNGPLVKEVVPVTLQDWRKLSTRLEDWKKFCGHQSNPEIRRGT 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29356144 29363478 + CcPI632755_11g016490.1 Cco11g1649 192885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1649 546 PANTHER EXPRESSED PROTEIN 38 335 IPR044710 GO:0000427(InterPro)
Cco11g1649 546 Pfam Plant transposase (Ptta/En/Spm family) 407 479 IPR004252 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1649 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g1649 Cco-Chr11:29356144 Cco11g1650 Cco-Chr11:29363717 5.10E-10 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g213 . Blo12g01118 . Bda03g00023 . Bpe04g00014 . . . . . Cma09g00769 . . . Cpe06g00606 . . . . . . . . . . . . . . . . . Cone17ag0819 . . . . . . . . . . . . . Sed05g2401 . Cmo09g00761 . . . Car09g00679 . . Bhi09g02714 Tan01g4062 Cmetu07g0118 . Hepe01g1588 Mch11g0855 . Cla11g01557 Cam11g1621 Cec11g1648 Cco11g1649 Clacu11g1778 Cmu11g1594 Cre11g2012 . . . Cme07g00813