Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1650 ATGGGGGGTCCACTCGTGAGAGAGGTAGTACCTGTGACCTTACGAGATGGGAGGAAATTGTCTACTAGATTGAAAGAAATTTTGTGGTCATCGATCCAATTGAGATATAATATGACGGAAGCTTGGCAAAGAGCTTATCTTTTTCAAAAGATGGGTAAGCTGTGGAGAGCAGGAAAATCACGGATTGTTTCCAAAATTCAAATGGCTTCTAGTGATGAGGAGCTTGTTAAATTGAAGCCAAACAATATACAATCGATGTACGATTGGATGGACTTTGTGAAAGAAAAGAAAAGTGAAAAATTCAAGGCAACAAGTGAAAAATTCAAATCCATGAAGAAGGGGCAACTTCCACATACATGTAGTCGTAAGAGTTATGCTCGATTGGCTGAAGAAATGGATCGTATTGAAAAAATTGATAATGAAGGGACAAACACTTCTTCAACTAATGTGAACAATAATGCAATAAGTAAAGTTCTTGGTCCTGATCGTGGTCATATTAGAGGACTTGGGTTTGGAGTGACCTTGTCAAAGTTGTCTCCATTCTCTCAAAGAGAGAGTTATGCCCAACTTGAAGAAAAGTATAAGAAGATTGAGGGAGAGATGACTGAAATGAGATCTTTGATATCTCACATACTCAAAGTTCAAGGAAATACAAGTGAACAACTCTCGAATGCTACAAATGAAATTGTGATTAACAATATTGCTATTGACCCTGTTGTATCTTCACCTTTGAGTGTTAACAATAATAATGATCTCCGCAACTGCAAGTTGCTAGATTGGTGCAGTACAGGAGATGTAGTTGCTGAAGGTCGATGGTCTTCAAGTGACCCGAAAGTTCTTGTTCATCATGTTTCCCTTGGTCCACAAGCAGTAAAAGTTTGGAAATCAAGAACAAGAACAAGATCAAGATCAAGATCATCAAGAAAGAAAGAAATGGGAAGAGGGAAGATTGAAATAAAGAGAATAGAGAACTCAAGCAACAGACAAGTCACATATTCAAAGAGAAGAAATGGGATTATCAAGAAAGCCAAAGAAATTACTGTTCTTTGTGATGCTCAAGTTTCTCTTGTCATTTTTGCTAGCTCTGGAAAAATGCATGAGTATTGTAGCCCTTCTACACCTTTGATTGACATCTTGGATAAGTATCACAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAACATGAGAATCTGAGCAATGAAATGGATAGGGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCATTTGAGAGGAGAAGATATAACATCTTTGAACTACAAGGAGCTCATGGCTCTTGAAGAAGCTCTTGAAAATGGCCTCACTGGTGTTCGTGAGAAGCAGTCGGAGTTCATGAAAATGATGAGGACAAATGAAAGAATGATGGAAGAAGAGAACAAGCGCCTGAACTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAAATGGATAATGGATATAATCAAAGAATGAGAGACTTCAATTCTCAGATGCCCTTTGCCTTCAGAGTTCAGCCTATTCAGCCAAATCTACAAGAAAGGAACAATTAA 1572 38.49 MGGPLVREVVPVTLRDGRKLSTRLKEILWSSIQLRYNMTEAWQRAYLFQKMGKLWRAGKSRIVSKIQMASSDEELVKLKPNNIQSMYDWMDFVKEKKSEKFKATSEKFKSMKKGQLPHTCSRKSYARLAEEMDRIEKIDNEGTNTSSTNVNNNAISKVLGPDRGHIRGLGFGVTLSKLSPFSQRESYAQLEEKYKKIEGEMTEMRSLISHILKVQGNTSEQLSNATNEIVINNIAIDPVVSSPLSVNNNNDLRNCKLLDWCSTGDVVAEGRWSSSDPKVLVHHVSLGPQAVKVWKSRTRTRSRSRSSRKKEMGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERNN 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29363717 29374557 + CcPI632755_11g016500.1 Cco11g1650 192886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1650 523 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 321 368 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco11g1650 523 CDD MADS_MEF2_like 313 391 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco11g1650 523 MobiDBLite consensus disorder prediction 295 320 - -
Cco11g1650 523 Pfam K-box region 393 474 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco11g1650 523 Coils Coil 187 207 - -
Cco11g1650 523 PRINTS MADS domain signature 314 334 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco11g1650 523 PRINTS MADS domain signature 334 349 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco11g1650 523 PRINTS MADS domain signature 349 370 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco11g1650 523 ProSiteProfiles K-box domain profile. 395 481 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco11g1650 523 SUPERFAMILY SRF-like 313 407 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco11g1650 523 MobiDBLite consensus disorder prediction 296 310 - -
Cco11g1650 523 Gene3D - 324 409 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco11g1650 523 PANTHER SERUM RESPONSE FACTOR HOMOLOG 312 491 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco11g1650 523 SMART madsneu2 312 371 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco11g1650 523 Coils Coil 388 422 - -
Cco11g1650 523 ProSitePatterns MADS-box domain signature. 314 368 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco11g1650 523 ProSiteProfiles MADS-box domain profile. 312 372 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2100 Cco-Chr5:29975605 Cco11g1650 Cco-Chr11:29363717 6.60E-34 dispersed
Cco05g2687 Cco-Chr5:34847549 Cco11g1650 Cco-Chr11:29363717 1.90E-14 dispersed
Cco10g0809 Cco-Chr10:16555976 Cco11g1650 Cco-Chr11:29363717 7.70E-47 dispersed
Cco11g1649 Cco-Chr11:29356144 Cco11g1650 Cco-Chr11:29363717 5.10E-10 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60299 PF01486 K-box 4.90E-18 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1650 K09264 - csv:101222239 408.297