Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1651 ATGGGACGACAATTGTCCGCCGACAAGCTCGTTCTGTTCTTGGATGCAGTACATTGGAATTACGAAGCACTACCACGAACGCTACCGCGCGTTCACCTGTGGTGTAGTGAGGCCCCACCCAGTTGTACCAGCAACCAACTCTACCGTCGACGCCGGACAGCGAGTGGGATGGCGGCAGCGGTCGGAGGAGGTAGTGGTAACGTCGGCGGTGGAGATGTGTCGAAGGCGCATGCGGCTATGGCTTTGGTGCAAGTAATCAATGGAGGTTATCATGTTATAACCAAAGTCGCCCTCAATGTTGGAATGAACCAGCTCGTCTTTTGTTTGTTCCGCGACTTGTTGGCTCTCGCGATTCTTTCCCCTGTCGCCTATGTTCGGGAGAAGCGAATTCGTTTGCCCATGACACGAGACCTCCTCATATCATTCTTCGTTCTTGGTTTAACTGGGATTTTTGGTAACCAGCTTCTCTTTCTCGTTGGACTTGGCTACACTAATCCAACTTATGCTGCTGCCATACAGCCTGCCATTCCAGTTTTTACATTCCTTTTTGCTGTTATGATGGGCACAGAGACTGTGAACTTACTCAAACTGGAAGGACAGGCAAAGGTTGGAGGTACCCTCGTTTGTGTCTCTGGTGCCATATTGATGGTTTTATTCCGTGGCCCAGCTTTGGTTGGAAGCACTGAATCTGATTTCATGTCACATAGTGAAATAAGTGCAAGGGGCCAGCCAGAGCCTGCTGGATGGTTAATGTCTAACTTTCTGGAATATGGATTGGATCATTTTCATGTTGGGGTTTTATGCTTGATAGGAAACTGTATGTGCATGGCTGCTTTCTTGGCTATCCAGGCACGAGTGTTAAAGAAGTATCCTGCTAACTTATCGGTCACAGCATATTCTTATTTATTTGGTGCTATATTGATGGTGATCACATCCTTCTTTATGACCAACGAATCCACAGACTGGAATTTGACGCAATCAGAGTTTTTTGCTGTCCTTTATGCCGGAGTTTTTGCATCTGCCATCAACTATGGACTCTTGACATGGTGCAACAAAATATTAGGACCTGCATTGGTCGCTCTTTACAATCCACTTCAACCTGCAGCATCTGCGCTGCTATCAAGAGTTTTCATAGGAAGCCCTATTTATCTTGGAAGTGTTTTGGGGGGATCTCTTATAATTGCTGGTCTTTATTTGGTTACATGGGCGTCACATAGGGAACGACAAACGACTCCGGTCTTGCTACCCCATTCAACCAGGTCCTCCGAACCACTTATTCATAAAGATGCATTGACTAACAAGTTTGCATATCAGATAGGACACATTTTCTCAGGGTCTGCCTCATCACCCAAATCTAGTTGGATTAGAACTCTGTTCTGTTCCACCCTTGAGCCAGTTGTGCCTCTAGCTTACATAAGTTCTTCAACTGGATGGTTTCTGGGTTTCCGGCCTGAGGAATGTATGATTTCAATCCACTCTGAATTGGTGCAACTCTGTAATTGCTTGAAATGCTGTGGAATTGAAGCTTGTAGTTGTACCATGAGCCAGAAGGTGAGACTTGCCTTGGAAGAGCAAGGCATTGATTACACATCGTATCATGTCAATCCCATCACGGCCAAGAACATGGACTCCTCATTCTTCAAGATCAACCCAAGTGCAAAACTTCCTGTCTTTCAAAATGGTTCCCACGTCATTTTCGACACAATCGAGATAATTCAGTACATAGAGAGAATTGCAGTTGTCTCCTCAGGGATCGATGACATAATGCCGAGTAGCAGAGAAGTCATTGAATGGATGCATAAGATACAAGAATGGAATCCAAAATTTTTCACTCTTGCCCACATACCTGAGAAGTACCGCCTTACTGTCACCAGATTTATAAGGCGGGTGGTGATCGCTCGGATGGCCGAAACTCCCGAAATGGCTGCTGCTTACCATCGTAAGCTTAGAGAAGCATACGAAACTGAAGACAAATTGAAAAACAAAACTGTTGTCAAACAAAGCACTGAACATCTAGTTAGACTTCTTGATGAAATCGAATCGAAACTAGGCGAAACTTCTTACTTGGCAGGGGAAGAGTTTACCATGGCTGATGCCGTGTTCATTCCAGTGCTGGCTCGAATCGTGCTGTTGAAGCTGGCAGACGAGTATATAGGCAGCAGACCGAACATTGCAGAGTATTGGATCTTGGTGCAGCAGAGGCCAAGCTACAAGAAGGTAATTGGGAAGTATTTCAATGGATGGAGAAAGCACAAAACACTTCTGAAAACGTGGTGCTTTGTTCATATCAGAACCTTGCTGAGGAGATATTGA 2313 45.4 MGRQLSADKLVLFLDAVHWNYEALPRTLPRVHLWCSEAPPSCTSNQLYRRRRTASGMAAAVGGGSGNVGGGDVSKAHAAMALVQVINGGYHVITKVALNVGMNQLVFCLFRDLLALAILSPVAYVREKRIRLPMTRDLLISFFVLGLTGIFGNQLLFLVGLGYTNPTYAAAIQPAIPVFTFLFAVMMGTETVNLLKLEGQAKVGGTLVCVSGAILMVLFRGPALVGSTESDFMSHSEISARGQPEPAGWLMSNFLEYGLDHFHVGVLCLIGNCMCMAAFLAIQARVLKKYPANLSVTAYSYLFGAILMVITSFFMTNESTDWNLTQSEFFAVLYAGVFASAINYGLLTWCNKILGPALVALYNPLQPAASALLSRVFIGSPIYLGSVLGGSLIIAGLYLVTWASHRERQTTPVLLPHSTRSSEPLIHKDALTNKFAYQIGHIFSGSASSPKSSWIRTLFCSTLEPVVPLAYISSSTGWFLGFRPEECMISIHSELVQLCNCLKCCGIEACSCTMSQKVRLALEEQGIDYTSYHVNPITAKNMDSSFFKINPSAKLPVFQNGSHVIFDTIEIIQYIERIAVVSSGIDDIMPSSREVIEWMHKIQEWNPKFFTLAHIPEKYRLTVTRFIRRVVIARMAETPEMAAAYHRKLREAYETEDKLKNKTVVKQSTEHLVRLLDEIESKLGETSYLAGEEFTMADAVFIPVLARIVLLKLADEYIGSRPNIAEYWILVQQRPSYKKVIGKYFNGWRKHKTLLKTWCFVHIRTLLRRY 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29376152 29386366 - CcPI632755_11g016510.1 Cco11g1651 192887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1651 770 SUPERFAMILY Thioredoxin-like 512 577 IPR036249 -
Cco11g1651 770 Pfam Glutathione S-transferase, N-terminal domain 512 577 IPR004045 -
Cco11g1651 770 SUPERFAMILY GST C-terminal domain-like 640 744 IPR036282 -
Cco11g1651 770 SUPERFAMILY Multidrug resistance efflux transporter EmrE 301 407 - -
Cco11g1651 770 Gene3D - 627 741 - -
Cco11g1651 770 Pfam Glutathione S-transferase, C-terminal domain 666 727 - -
Cco11g1651 770 PANTHER GLUTATHIONE S-TRANSFERASE TCHQD 515 770 IPR044617 GO:0004364(InterPro)
Cco11g1651 770 SFLD Glutathione Transferase (cytosolic) 510 734 IPR040079 -
Cco11g1651 770 Gene3D Glutaredoxin 508 579 - -
Cco11g1651 770 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 515 583 IPR004045 -
Cco11g1651 770 CDD GST_N_family 515 576 - -
Cco11g1651 770 SUPERFAMILY Multidrug resistance efflux transporter EmrE 111 219 - -
Cco11g1651 770 SFLD Main (cytGST) 510 734 - -
Cco11g1651 770 Pfam EamA-like transporter family 265 401 IPR000620 GO:0016020(InterPro)
Cco11g1651 770 Pfam EamA-like transporter family 78 199 IPR000620 GO:0016020(InterPro)
Cco11g1651 770 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 621 754 IPR010987 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g1620 Cco-Chr11:29020257 Cco11g1651 Cco-Chr11:29376152 2.80E-36 dispersed
Cco11g1651 Cco-Chr11:29376152 Cco08g1649 Cco-Chr8:27981629 1.50E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1651 - - - 0.0