Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1651 ATGGGACGACAATTGTCCGCCGACAAGCTCGTTCTGTTCTTGGATGCAGTACATTGGAATTACGAAGCACTACCACGAACGCTACCGCGCGTTCACCTGTGGTGTAGTGAGGCCCCACCCAGTTGTACCAGCAACCAACTCTACCGTCGACGCCGGACAGCGAGTGGGATGGCGGCAGCGGTCGGAGGAGGTAGTGGTAACGTCGGCGGTGGAGATGTGTCGAAGGCGCATGCGGCTATGGCTTTGGTGCAAGTAATCAATGGAGGTTATCATGTTATAACCAAAGTCGCCCTCAATGTTGGAATGAACCAGCTCGTCTTTTGTTTGTTCCGCGACTTGTTGGCTCTCGCGATTCTTTCCCCTGTCGCCTATGTTCGGGAGAAGCGAATTCGTTTGCCCATGACACGAGACCTCCTCATATCATTCTTCGTTCTTGGTTTAACTGGGATTTTTGGTAACCAGCTTCTCTTTCTCGTTGGACTTGGCTACACTAATCCAACTTATGCTGCTGCCATACAGCCTGCCATTCCAGTTTTTACATTCCTTTTTGCTGTTATGATGGGCACAGAGACTGTGAACTTACTCAAACTGGAAGGACAGGCAAAGGTTGGAGGTACCCTCGTTTGTGTCTCTGGTGCCATATTGATGGTTTTATTCCGTGGCCCAGCTTTGGTTGGAAGCACTGAATCTGATTTCATGTCACATAGTGAAATAAGTGCAAGGGGCCAGCCAGAGCCTGCTGGATGGTTAATGTCTAACTTTCTGGAATATGGATTGGATCATTTTCATGTTGGGGTTTTATGCTTGATAGGAAACTGTATGTGCATGGCTGCTTTCTTGGCTATCCAGGCACGAGTGTTAAAGAAGTATCCTGCTAACTTATCGGTCACAGCATATTCTTATTTATTTGGTGCTATATTGATGGTGATCACATCCTTCTTTATGACCAACGAATCCACAGACTGGAATTTGACGCAATCAGAGTTTTTTGCTGTCCTTTATGCCGGAGTTTTTGCATCTGCCATCAACTATGGACTCTTGACATGGTGCAACAAAATATTAGGACCTGCATTGGTCGCTCTTTACAATCCACTTCAACCTGCAGCATCTGCGCTGCTATCAAGAGTTTTCATAGGAAGCCCTATTTATCTTGGAAGTGTTTTGGGGGGATCTCTTATAATTGCTGGTCTTTATTTGGTTACATGGGCGTCACATAGGGAACGACAAACGACTCCGGTCTTGCTACCCCATTCAACCAGGTCCTCCGAACCACTTATTCATAAAGATGCATTGACTAACAAGTTTGCATATCAGATAGGACACATTTTCTCAGGGTCTGCCTCATCACCCAAATCTAGTTGGATTAGAACTCTGTTCTGTTCCACCCTTGAGCCAGTTGTGCCTCTAGCTTACATAAGTTCTTCAACTGGATGGTTTCTGGGTTTCCGGCCTGAGGAATGTATGATTTCAATCCACTCTGAATTGGTGCAACTCTGTAATTGCTTGAAATGCTGTGGAATTGAAGCTTGTAGTTGTACCATGAGCCAGAAGGTGAGACTTGCCTTGGAAGAGCAAGGCATTGATTACACATCGTATCATGTCAATCCCATCACGGCCAAGAACATGGACTCCTCATTCTTCAAGATCAACCCAAGTGCAAAACTTCCTGTCTTTCAAAATGGTTCCCACGTCATTTTCGACACAATCGAGATAATTCAGTACATAGAGAGAATTGCAGTTGTCTCCTCAGGGATCGATGACATAATGCCGAGTAGCAGAGAAGTCATTGAATGGATGCATAAGATACAAGAATGGAATCCAAAATTTTTCACTCTTGCCCACATACCTGAGAAGTACCGCCTTACTGTCACCAGATTTATAAGGCGGGTGGTGATCGCTCGGATGGCCGAAACTCCCGAAATGGCTGCTGCTTACCATCGTAAGCTTAGAGAAGCATACGAAACTGAAGACAAATTGAAAAACAAAACTGTTGTCAAACAAAGCACTGAACATCTAGTTAGACTTCTTGATGAAATCGAATCGAAACTAGGCGAAACTTCTTACTTGGCAGGGGAAGAGTTTACCATGGCTGATGCCGTGTTCATTCCAGTGCTGGCTCGAATCGTGCTGTTGAAGCTGGCAGACGAGTATATAGGCAGCAGACCGAACATTGCAGAGTATTGGATCTTGGTGCAGCAGAGGCCAAGCTACAAGAAGGTAATTGGGAAGTATTTCAATGGATGGAGAAAGCACAAAACACTTCTGAAAACGTGGTGCTTTGTTCATATCAGAACCTTGCTGAGGAGATATTGA 2313 45.4 MGRQLSADKLVLFLDAVHWNYEALPRTLPRVHLWCSEAPPSCTSNQLYRRRRTASGMAAAVGGGSGNVGGGDVSKAHAAMALVQVINGGYHVITKVALNVGMNQLVFCLFRDLLALAILSPVAYVREKRIRLPMTRDLLISFFVLGLTGIFGNQLLFLVGLGYTNPTYAAAIQPAIPVFTFLFAVMMGTETVNLLKLEGQAKVGGTLVCVSGAILMVLFRGPALVGSTESDFMSHSEISARGQPEPAGWLMSNFLEYGLDHFHVGVLCLIGNCMCMAAFLAIQARVLKKYPANLSVTAYSYLFGAILMVITSFFMTNESTDWNLTQSEFFAVLYAGVFASAINYGLLTWCNKILGPALVALYNPLQPAASALLSRVFIGSPIYLGSVLGGSLIIAGLYLVTWASHRERQTTPVLLPHSTRSSEPLIHKDALTNKFAYQIGHIFSGSASSPKSSWIRTLFCSTLEPVVPLAYISSSTGWFLGFRPEECMISIHSELVQLCNCLKCCGIEACSCTMSQKVRLALEEQGIDYTSYHVNPITAKNMDSSFFKINPSAKLPVFQNGSHVIFDTIEIIQYIERIAVVSSGIDDIMPSSREVIEWMHKIQEWNPKFFTLAHIPEKYRLTVTRFIRRVVIARMAETPEMAAAYHRKLREAYETEDKLKNKTVVKQSTEHLVRLLDEIESKLGETSYLAGEEFTMADAVFIPVLARIVLLKLADEYIGSRPNIAEYWILVQQRPSYKKVIGKYFNGWRKHKTLLKTWCFVHIRTLLRRY 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29376152 29386366 - CcPI632755_11g016510.1 Cco11g1651 192887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1651 770 SUPERFAMILY Thioredoxin-like 512 577 IPR036249 -
Cco11g1651 770 Pfam Glutathione S-transferase, N-terminal domain 512 577 IPR004045 -
Cco11g1651 770 SUPERFAMILY GST C-terminal domain-like 640 744 IPR036282 -
Cco11g1651 770 SUPERFAMILY Multidrug resistance efflux transporter EmrE 301 407 - -
Cco11g1651 770 Gene3D - 627 741 - -
Cco11g1651 770 Pfam Glutathione S-transferase, C-terminal domain 666 727 - -
Cco11g1651 770 PANTHER GLUTATHIONE S-TRANSFERASE TCHQD 515 770 IPR044617 GO:0004364(InterPro)
Cco11g1651 770 SFLD Glutathione Transferase (cytosolic) 510 734 IPR040079 -
Cco11g1651 770 Gene3D Glutaredoxin 508 579 - -
Cco11g1651 770 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 515 583 IPR004045 -
Cco11g1651 770 CDD GST_N_family 515 576 - -
Cco11g1651 770 SUPERFAMILY Multidrug resistance efflux transporter EmrE 111 219 - -
Cco11g1651 770 SFLD Main (cytGST) 510 734 - -
Cco11g1651 770 Pfam EamA-like transporter family 265 401 IPR000620 GO:0016020(InterPro)
Cco11g1651 770 Pfam EamA-like transporter family 78 199 IPR000620 GO:0016020(InterPro)
Cco11g1651 770 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 621 754 IPR010987 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1651 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g1620 Cco-Chr11:29020257 Cco11g1651 Cco-Chr11:29376152 2.80E-36 dispersed
Cco11g1651 Cco-Chr11:29376152 Cco08g1649 Cco-Chr8:27981629 1.50E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g181 . . . . . . . . Cmo05g00324 . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1908 Cone17ag1424 . . . . . . . Bda08g01191 . . . . . . . . . Cma05g00323 . . . . . . . . . . . Cla11g01561 Cam11g1626 Cec11g1652 Cco11g1651 Clacu11g1782 Cmu11g1598 Cre11g2016 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g0578 . 1 210 Glutathione S-transferase Gene Family AT4G02520 60.1 4.8e-65 244.6
Cco09g0580 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 6.9e-64 240.7
Cco09g0579 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 8.8e-59 223.8
Cco09g0578 . 1 211 Glutathione S-transferase Gene Family AT2G02930 61.2 2.5e-66 248.8
Cco09g0580 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.3 2.0e-63 239.2
Cco09g0579 . 1 210 Glutathione S-transferase Gene Family AT2G02930 56.3 7.9e-60 227.3
Cco09g0580 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.2 9.5e-60 227.3
Cco09g0578 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 1.6e-59 226.5
Cco09g0579 . 5 206 Glutathione S-transferase Gene Family AT1G02950 51.7 2.5e-52 202.6
Cco09g0578 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.8 5.2e-64 241.1
Cco09g0580 . 1 210 Glutathione S-transferase Gene Family AT1G02930 56.2 5.8e-63 237.7
Cco09g0579 . 1 210 Glutathione S-transferase Gene Family AT1G02930 52.9 8.0e-57 217.2
Cco09g0578 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.2 2.1e-65 245.7
Cco09g0580 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.7 5.2e-64 241.1
Cco09g0579 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 8.6e-59 223.8
Cco09g0580 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.8 2.0e-68 256.1
Cco09g0578 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.2 1.6e-65 246.5
Cco09g0579 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.8 1.0e-61 233.8
Cco09g0581 . 1 214 Glutathione S-transferase Gene Family AT3G62760 58.4 2.0e-74 275.8
Cco09g0578 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 2.2e-48 189.5
Cco04g0940 . 3 214 Glutathione S-transferase Gene Family AT3G09270 53.3 1.6e-63 239.6
Cco04g0938 . 3 213 Glutathione S-transferase Gene Family AT3G09270 52.8 4.7e-63 238.0
Cco04g0951 . 3 217 Glutathione S-transferase Gene Family AT3G09270 51.9 2.2e-60 229.2
Cco05g0297 . 2 213 Glutathione S-transferase Gene Family AT3G09270 51.9 1.1e-59 226.9
Cco04g0953 . 3 212 Glutathione S-transferase Gene Family AT3G09270 52.8 1.1e-54 210.3
Cco05g2702 . 1 109 Glutathione S-transferase Gene Family AT1G74590 60.6 3.5e-37 152.1
Cco07g1132 . 1 214 Glutathione S-transferase Gene Family AT1G78380 71.0 1.2e-87 319.7
Cco07g1134 . 1 216 Glutathione S-transferase Gene Family AT1G78380 70.4 1.2e-87 319.7
Cco07g1133 . 1 217 Glutathione S-transferase Gene Family AT1G78380 61.3 3.2e-72 268.5
Cco01g0892 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.4 8.2e-68 253.8
Cco07g1132 . 7 214 Glutathione S-transferase Gene Family AT1G78370 64.9 3.5e-79 291.6
Cco07g1134 . 7 214 Glutathione S-transferase Gene Family AT1G78370 62.0 1.5e-74 276.2
Cco01g0892 . 7 220 Glutathione S-transferase Gene Family AT1G78370 54.7 5.4e-64 241.1
Cco07g1133 . 7 216 Glutathione S-transferase Gene Family AT1G78370 52.9 1.1e-61 233.4
Cco07g1132 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 5.4e-80 294.3
Cco07g1134 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.4 9.3e-80 293.5
Cco07g1133 . 1 217 Glutathione S-transferase Gene Family AT1G78340 53.9 7.1e-64 240.7
Cco01g0892 . 4 218 Glutathione S-transferase Gene Family AT1G78340 54.0 3.5e-63 238.4
Cco07g1132 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.2 2.5e-60 228.8
Cco07g1132 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.2 1.5e-90 329.3
Cco07g1134 . 1 219 Glutathione S-transferase Gene Family AT1G17180 63.9 2.4e-83 305.4
Cco07g1133 . 1 220 Glutathione S-transferase Gene Family AT1G17180 56.4 2.1e-71 265.8
Cco01g0892 . 4 224 Glutathione S-transferase Gene Family AT1G17180 55.7 1.7e-68 256.1
Cco07g1132 . 3 217 Glutathione S-transferase Gene Family AT1G17190 58.6 1.5e-74 276.2
Cco07g1134 . 2 217 Glutathione S-transferase Gene Family AT1G17190 56.9 1.1e-72 270.0
Cco07g1132 . 3 214 Glutathione S-transferase Gene Family AT3G43800 58.8 3.3e-72 268.5
Cco07g1134 . 3 214 Glutathione S-transferase Gene Family AT3G43800 56.9 6.9e-70 260.8
Cco07g1132 . 4 218 Glutathione S-transferase Gene Family AT1G53680 58.1 5.2e-70 261.2
Cco07g1134 . 2 219 Glutathione S-transferase Gene Family AT1G53680 56.4 6.4e-68 254.2
Cco01g0892 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 9.6e-64 240.4
Cco02g0032 . 55 221 Glutathione S-transferase Gene Family AT2G02390 67.7 1.1e-60 229.9
Cco05g0266 . 61 227 Glutathione S-transferase Gene Family AT2G02390 51.5 7.0e-47 184.1
Cco02g0032 . 14 224 Glutathione S-transferase Gene Family AT2G02380 64.5 3.2e-75 278.5
Cco05g0266 . 18 226 Glutathione S-transferase Gene Family AT2G02380 53.6 1.1e-59 226.9
Cco07g0857 . 37 273 Glutathione S-transferase Gene Family AT5G41210 68.4 9.1e-92 333.6
Cco07g0857 . 37 273 Glutathione S-transferase Gene Family AT5G41240 66.7 1.0e-88 324.7
Cco10g2060 . 1 235 Glutathione S-transferase Gene Family AT5G02780 67.4 6.3e-90 327.4
Cco10g2059 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.9 2.6e-83 305.4
Cco02g1483 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.5e-80 295.0
Cco02g1483 . 29 292 Glutathione S-transferase Gene Family AT3G55040 61.1 1.5e-85 313.2
Cco10g2060 . 6 233 Glutathione S-transferase Gene Family AT3G55040 60.1 1.6e-79 293.1
Cco10g2059 . 3 234 Glutathione S-transferase Gene Family AT3G55040 58.4 8.9e-78 287.3
Cco10g2060 . 1 235 Glutathione S-transferase Gene Family AT5G02790 69.8 7.6e-96 347.1
Cco10g2059 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 1.8e-89 325.9
Cco02g1483 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 3.7e-82 301.6
Cco02g1456 . 1 212 Glutathione S-transferase Gene Family AT1G19570 65.7 1.4e-80 296.2
Cco05g1317 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.9 3.1e-72 268.5
Cco02g1456 . 1 211 Glutathione S-transferase Gene Family AT1G75270 69.8 5.0e-86 314.3
Cco05g1317 . 65 272 Glutathione S-transferase Gene Family AT1G75270 62.2 3.9e-75 278.1
Cco05g1317 . 54 274 Glutathione S-transferase Gene Family AT5G16710 77.4 9.2e-103 370.2
Cco02g1456 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 4.9e-72 268.1
Cco11g1651 . 515 770 Glutathione S-transferase Gene Family AT1G77290 69.1 4.3e-103 371.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006192 2 2 2 3 2 0 2 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36