Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1674 ATGGCGACAACTGCAGGTTTAGAGGTGGGGGGAAATTTCGTGTCCGATTCAACGAAGGGGGCGGGGACAGTGGCATATCCACAGGGAACAGTGTCATTTTTCTTGCAGCAGCTCGTTGTTACCAGATTACTATATGTTCAAGAAAGCCATTCCTGTATTTGGTATCTCAGATGGTTTGTTGTAATTGTATTATGCTTGACTGGTGTCACCATGGGCTTCTGTACCGTAAAATGGCAATGGCTACTGATTCTTCACATTGTGCCGCTTTGTATGTTAATGAGCAGAAGCAGGGGTATCAGTTCTGATGGCGAGGCACTTTTGAGCTTCAGAGCATCAATTCTTGATTCTGATAGTGTTCTTCTTCAATGGAAGCCAGAGGAACCCCATCCTTGTAAATGGAAAGGAATAACATGTGATCCAAAAACCAAGAGAGTGATATATTTGAGTCTTCCTTATCACAAACTTAGTGGATCGCTATCCCCCGAACTTGGAAAGCTTGACCACCTAAAAATTTTAGCTCTTCATGACAATAACTTTTATGGAACAATTCCATCAGAATTAGGGAATTGCTCACAGTTGCAGGGAGTGTTCCTGCAGGGTAATTACTTTAGTGGGTTCATTCCCAATGAATTAGGGAATCTTTCGGCACTTAAAAACTTAGACATTTCAAGTAACTCACTCGGTGGAAATATTCCCATCTCGCTCGGGAAGTTGAGCAAGCTTATTAGTTTAAACGTGTCTGCCAATTTTCTGGTTGGATCAATTCCAAATGTTGGCGTGCTACTCAACTTCTCGGAAAGCTCATTTCTTGGAAACCGTGGCTTGTGCGGGAAGCAAATAAATGTTGTGTGCAAAGATGACAAAAAGGGACCTGAAACTAATGAGTCGCCATTCTCAGTGGAAAATCAAATTGGGAAGAAGTACTCTGGCCGACTACTTATAAGTGCTTCGGCAACTGTGGGTGCTTTACTGCTGGTTGCCCTAATGTGTTTCTGGGGTTGCTTTCTGTATAAAAAGTTCGGCAAAAATGACAGTAAAGGTCTAGTGCTGGATGGTTGTGGAGGTGCTCGTGCTGCGGGTGTAATGTTTCATGGAGACTTGCCATACGTATCTAAAGATATTATTAAGAAATTTGAGACACTGAATGAAGAACACATAATAGGATGTGGGGGCTTTGGAACCGTGTACAAGCTTGCAATGGATGATGGCAATGTTTTTGCCTTGAAAAGAATTGTAAAATTGAATGAGGGCTTTGATCGTTTTTTTGAGAGAGAGCTCGAAATTCTTGGAAGCATCAAGCACAGGTTTCTTGTGAATTTGCGAGGATATTGCAATTCTCCTACATCAAAGCTGTTAATTTATGATTTCCTTCCCGGAGGCAGCCTTGACGAGGCACTACACGGCCTACGTACTGAATTGTCTGAGCAACTAGACTGGGATGCACGCTTAAATATTATCATGGGAGCTGCAAAGGGACTTGCATATTTGCATCATGATTGCTCTCCGCGGATAATTCACCGAGACATAAAATCAAGCAACATTTTACTTGACGCTAATTTGGAGGCTCGAGTTTCTGACTTTGGACTTGCGAAACTTTTAGAGGATGAAGAATCACATATCACGACTATTGTTGCAGGAACATTTGGTTATCTGGCTCCTGAGTATATGCAAAGTGGTAGAGCTACTGAAAAGACTGATGTATACAGTTTTGGGGTATTGGTACTTGAAGTGTTGAGTGGCAAACGTCCCACAGATGCTTCATTCATTGAGAAGGGGCTAAACATTGTTGGTTGGTTAAACTTTCTAGTCACAGAGAATCGACAACGGGAAATAGCTGACTTACAGTGTGAGGGCATGCAAGCAGAGAGCTTGGATGCATTGCTTTCAGTTGCCATCCAATGTGTTTCGTCGAATGCAGAGGATCGACCAACCATGCACAGGGTAGTCCAGATATTGGAATCTGAGATTATGACTCCATGCCCAAGTGATTTCTATGATACAGATTAA 2007 42.45 MATTAGLEVGGNFVSDSTKGAGTVAYPQGTVSFFLQQLVVTRLLYVQESHSCIWYLRWFVVIVLCLTGVTMGFCTVKWQWLLILHIVPLCMLMSRSRGISSDGEALLSFRASILDSDSVLLQWKPEEPHPCKWKGITCDPKTKRVIYLSLPYHKLSGSLSPELGKLDHLKILALHDNNFYGTIPSELGNCSQLQGVFLQGNYFSGFIPNELGNLSALKNLDISSNSLGGNIPISLGKLSKLISLNVSANFLVGSIPNVGVLLNFSESSFLGNRGLCGKQINVVCKDDKKGPETNESPFSVENQIGKKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNDSKGLVLDGCGGARAAGVMFHGDLPYVSKDIIKKFETLNEEHIIGCGGFGTVYKLAMDDGNVFALKRIVKLNEGFDRFFERELEILGSIKHRFLVNLRGYCNSPTSKLLIYDFLPGGSLDEALHGLRTELSEQLDWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDANLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTENRQREIADLQCEGMQAESLDALLSVAIQCVSSNAEDRPTMHRVVQILESEIMTPCPSDFYDTD 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29582767 29591542 - CcPI632755_11g016740.1 Cco11g1674 192910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1674 668 Pfam Leucine Rich Repeat 217 238 IPR001611 GO:0005515(InterPro)
Cco11g1674 668 Pfam Leucine Rich Repeat 168 190 IPR001611 GO:0005515(InterPro)
Cco11g1674 668 ProSitePatterns Protein kinases ATP-binding region signature. 387 413 IPR017441 GO:0005524(InterPro)
Cco11g1674 668 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 354 456 - -
Cco11g1674 668 Gene3D Ribonuclease Inhibitor 99 286 IPR032675 -
Cco11g1674 668 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 99 261 - -
Cco11g1674 668 Gene3D Transferase(Phosphotransferase) domain 1 457 659 - -
Cco11g1674 668 SMART serkin_6 381 657 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1674 668 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 457 663 - -
Cco11g1674 668 Gene3D Phosphorylase Kinase; domain 1 359 456 - -
Cco11g1674 668 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 253 654 IPR050647 -
Cco11g1674 668 Pfam Protein kinase domain 383 650 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1674 668 ProSiteProfiles Protein kinase domain profile. 381 657 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1674 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1674 668 Pfam Leucine rich repeat N-terminal domain 100 139 IPR013210 -
Cco11g1674 668 SUPERFAMILY L domain-like 100 266 - -
Cco11g1674 668 SUPERFAMILY Protein kinase-like (PK-like) 369 652 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1843 Cco-Chr6:28696661 Cco11g1674 Cco-Chr11:29582767 4.90E-123 dispersed
Cco07g1207 Cco-Chr7:25920468 Cco11g1674 Cco-Chr11:29582767 6.10E-228 dispersed
Cco09g1423 Cco-Chr9:18609304 Cco11g1674 Cco-Chr11:29582767 8.70E-66 dispersed
Cco11g1674 Cco-Chr11:29582767 Cco11g1766 Cco-Chr11:30386896 6.10E-82 dispersed
Cco11g1674 Cco-Chr11:29582767 Cco01g1573 Cco-Chr1:28443333 1.70E-137 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87259 PF00069 Pkinase 1.10E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1674 - - - 0.0