Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1676 ATGCTAATTTTAGTTGGAAATATGCAAGGAACAGGAACAATGGCGTCTGTGGCTTCCTTGTTCAATTTGGGGGGTGTTGGAATGGTAGGATCATTAGAGAAGCCTCGTTCACAGTTTCGTGGAGTTTGTTTATCGAGAAGAGGTTTTAATGGAAGTAATAGATGGTATTATGTATCATTTCCTCTTTGTAAATATTCAGCAACAACAACAACTGATTTTGTTGCCGACCAAGGCAATGCCATCTCTGTTGATTCTAATTCTTATAGAAGAAGTAAAGAAGACGACAACACTGATTTTCTTCTGAAGCCAGCCCCCAAGCCAGTATTGAAAGCTGCAGAGTCTAAGCCCCTTGTAGGTTTGAATAAAGTAACATGGGAATCTCCGAGAACTAATGGGGATTCTAACAGTAACAGCAAATTGTTGGACGATGAAGAAGAAAGGAGCAAGGTGATTGAGTCTCTTGGAGAGGTATTGGAAAAGGCTGAAAAGCTAGAGACTCCGAAGTTGGGTAATAAGAGACCAGGAAGAGGTGTAGACAAGCCAACAACATCAAGCTCAAGCACTAATTCGAAGCCAGTAAACTCGATGGCGAATCGAAAATCTAAAACTTTGAAAAGTGTTTGGCGCAAGGGAGATACAGTTGCATCGGTGCAGAAGATTGTAGCAGAGCCATCTAAGCCTAATGGGGAAGTTGAAGCTAAACCAGGGGGAGTTAGCAAGGTAGAGCCTCAATCACGTGCTGCTTTTCGACCCCCTCAACCACCTGTGAAACCACAACCAAAGTTACAAGAAAAGCCTTTGGCTGCACCCCGACCTACATTAAAGAAACCAGTTGTCTTGAAGGATGTGGGGGCAGCAACTGTGACAGCAGATGATGAAACTAATACAGCAGCAAAGACAAAAGAGAGAAAGCCAATTCTGATTGACAAATATGCTTCAAAGAAACCTGTAGTTGATCCTTTTATTTCTGACGCTGTATTGGCCCCAACAAAACCTGGAAAAGCCCCTCCTCCTGGAAAGTTCAAGGACGATTACCGCAAGAAGAGTGTTGCATCAGGAGGTCCACGAAGGAGAATGGTTGATAACAATAAAGATGATGTTGAAATCCCTGATGATGTTTCCATTCCTAGTGTGACTACAGCACGAAAAGGAAGGAAATGGAGCAAGGCGAGCCGGAAGGCAGCAAGAATCCAGGCTTCCAAAGATGCTGCCCCTGTGAAAGTTGAAATTCTAGAAGTTGAAGAAAGTGGTATGTTGCTTGAGGAATTGGCGTACAATTTAGCCATCAGTGAAGGTGAAATTCTTGGGTATTTATATTCAAAGGGGATTAAGCCTGATGGCGTGCAAACTTTAGATAAAGATATAGTGAAGATGATCTGCAAAGAGTATGATGTAGAGACCATAGACGTTGATCCGGTTAAAGTTGAAGAGTTCGCTAAAAAGAGGGATATTTTTGATGAAGAAGATCTGGATAAACTTCAAAGCAGGCCTCCAGTCATCACCATTATGGGACATGTTGACCATGGCAAGACTACACTTTTGGACTACATCCGCAGGAGCAAGGTAGCTGCATCAGAAGCTGGTGGGATTACTCAAGGAATTGGTGCTTACAGGGTGTTGGTACCACTTGATGGCAAGTTGCAGCCATGCGTGTTCCTTGATACTCCGGGGCATGAGGCGTTTGGAGCCATGAGAGCTCGTGGTGCTCGGGTGACAGACATTGCCATCATTGTGGTGGCTGCTGATGATGGAATCCGGCCTCAGACAAATGAGGCTATAGCTCATGCCAGAGCAGCTGGAGTACCAATAGTGATTGCAATAAATAAGATTGACAAAGATGGTGCTAATGCAGATAGAGTGATGCAAGAACTTTCCTCTATCGGTCTAATGCCAGAGGACTGGGGTGGTGACATCCCCATGGTGCAGATTAGTGCTCTGAAAGGGCTGAATGTGGATGACCTGTTGGAAACAGTAATGCTTCTTGCTGAGTTGCAAGAATTGAAGGCTAATCCCGATAGAAGTGCAAAAGGGACTGTCATTGAGGCAGGTCTTGACAAATCAAAAGGACCATTTGCTACGTTTATTGTACAGAATGGAACCCTTAAAAGGGGAGATGTTGTAGTATGTGGGGAGGCCTTTGGGAAGGTTAGAGCTTTATTTGATGATGGCGGGAAACGAGTCGACGAAGCTGGGCCTTCTTTACCAGTACAGGTCATTGGGTTAAATATTGTGCCAATTGCCGGTGATGTATTCGAGGTTGTTGATTCCCTTGATACTGCTCGTGAAAAGGCAGAGTTACGTGCCGAGGCCTTGCGGTCACAACGAATATCAGATAAGGCTGGAGATGGGAAGGTTACCCTTTCTTCTTTAGCTTCAGCAGTTTCATCAGGAAAGCAGGCTGGGTTAGACTTGCACCAACTAAACATAATTATGAAGGTCGATGTTCAGGGATCAATTGAGGCTATTAGACAAGCTCTTCAGGTGCTCCCCCGAGAAAATGTCTCTTTGAAGTTTCTTTTGCAAGCAACTGGCGATGTGAGCTCCAGTGATATTGATCTTGCAGTTGCAAGCAAAGCCATAATTTTAGGGTTTAATGTTAAAGCACCAGGTTCTGTCAAAAGTTATGCGGAAAATAAAGGTGTCGAGATTAGGCTCTATAGAGTCATCTACGAGCTTATTGATGATGTGCGGAACGCAATGGAAGGACTCCTAGAACCTGTAGAGGAAAAAGTACCAATAGGGTCGGCAGAAGTCCGTGCAGTATTCAGTAGTGGCAGTGGTCTTGTTGCTGGATGCATGGTAGTAGAAGGAAAGCTGGTAAAGGGCTGTGGCATTCAAGTTCTGCGGAAGGGTAAAACGGTGTATAATGGTCAACTTGATTCACTGCGACGAGTCAAAGAAATCGTGAAAGAGGTAAATGCTGGCTTAGAGTGTGGAGTTGGAATGGAGGATTACAATGATTGGGAGGTGGGGGATGTAATAGAGGCCTTTGACACCATTCTGAAGAAGCGGACGCTAGAAGAGGCCTCGGCTTCAATGACAGCTGCACTGGAGGAAGCTGGAATTGACTTGTAG 3075 44.62 MLILVGNMQGTGTMASVASLFNLGGVGMVGSLEKPRSQFRGVCLSRRGFNGSNRWYYVSFPLCKYSATTTTDFVADQGNAISVDSNSYRRSKEDDNTDFLLKPAPKPVLKAAESKPLVGLNKVTWESPRTNGDSNSNSKLLDDEEERSKVIESLGEVLEKAEKLETPKLGNKRPGRGVDKPTTSSSSTNSKPVNSMANRKSKTLKSVWRKGDTVASVQKIVAEPSKPNGEVEAKPGGVSKVEPQSRAAFRPPQPPVKPQPKLQEKPLAAPRPTLKKPVVLKDVGAATVTADDETNTAAKTKERKPILIDKYASKKPVVDPFISDAVLAPTKPGKAPPPGKFKDDYRKKSVASGGPRRRMVDNNKDDVEIPDDVSIPSVTTARKGRKWSKASRKAARIQASKDAAPVKVEILEVEESGMLLEELAYNLAISEGEILGYLYSKGIKPDGVQTLDKDIVKMICKEYDVETIDVDPVKVEEFAKKRDIFDEEDLDKLQSRPPVITIMGHVDHGKTTLLDYIRRSKVAASEAGGITQGIGAYRVLVPLDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAIIVVAADDGIRPQTNEAIAHARAAGVPIVIAINKIDKDGANADRVMQELSSIGLMPEDWGGDIPMVQISALKGLNVDDLLETVMLLAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLKRGDVVVCGEAFGKVRALFDDGGKRVDEAGPSLPVQVIGLNIVPIAGDVFEVVDSLDTAREKAELRAEALRSQRISDKAGDGKVTLSSLASAVSSGKQAGLDLHQLNIIMKVDVQGSIEAIRQALQVLPRENVSLKFLLQATGDVSSSDIDLAVASKAIILGFNVKAPGSVKSYAENKGVEIRLYRVIYELIDDVRNAMEGLLEPVEEKVPIGSAEVRAVFSSGSGLVAGCMVVEGKLVKGCGIQVLRKGKTVYNGQLDSLRRVKEIVKEVNAGLECGVGMEDYNDWEVGDVIEAFDTILKKRTLEEASASMTAALEEAGIDL 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29598577 29605614 + CcPI632755_11g016760.1 Cco11g1676 192912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1676 1024 CDD IF2_mtIF2_II 675 769 IPR044145 -
Cco11g1676 1024 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 802 914 IPR036925 -
Cco11g1676 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 671 IPR027417 -
Cco11g1676 1024 MobiDBLite consensus disorder prediction 178 202 - -
Cco11g1676 1024 Gene3D - 492 670 IPR027417 -
Cco11g1676 1024 Gene3D Translation factors 671 786 - -
Cco11g1676 1024 Pfam Elongation factor G domain 2 675 753 IPR053905 -
Cco11g1676 1024 Hamap Translation initiation factor IF-2 [infB]. 7 1004 IPR000178 GO:0003743(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0006413(InterPro)
Cco11g1676 1024 FunFam Translation initiation factor IF-2 908 1005 - -
Cco11g1676 1024 NCBIfam translation initiation factor IF-2 418 1006 IPR000178 GO:0003743(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0006413(InterPro)
Cco11g1676 1024 FunFam Translation initiation factor IF-2 492 670 - -
Cco11g1676 1024 Gene3D Translation factors 909 1005 - -
Cco11g1676 1024 Pfam Elongation factor Tu GTP binding domain 500 660 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco11g1676 1024 MobiDBLite consensus disorder prediction 162 278 - -
Cco11g1676 1024 CDD mtIF2_IVc 914 996 - -
Cco11g1676 1024 MobiDBLite consensus disorder prediction 337 351 - -
Cco11g1676 1024 Coils Coil 754 774 - -
Cco11g1676 1024 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 257 1008 IPR015760 GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0006413(PANTHER)
Cco11g1676 1024 SUPERFAMILY Translation proteins 671 754 IPR009000 -
Cco11g1676 1024 Pfam Translation initiation factor IF-2, N-terminal region 420 466 IPR006847 -
Cco11g1676 1024 MobiDBLite consensus disorder prediction 329 368 - -
Cco11g1676 1024 SUPERFAMILY Translation proteins 910 1004 IPR009000 -
Cco11g1676 1024 FunFam Translation initiation factor IF-2 803 908 - -
Cco11g1676 1024 Gene3D - 803 908 IPR036925 -
Cco11g1676 1024 PRINTS GTP-binding elongation factor signature 499 512 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco11g1676 1024 PRINTS GTP-binding elongation factor signature 567 578 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco11g1676 1024 PRINTS GTP-binding elongation factor signature 551 561 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco11g1676 1024 PRINTS GTP-binding elongation factor signature 603 612 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco11g1676 1024 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 495 668 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco11g1676 1024 FunFam Translation initiation factor IF-2 671 789 - -
Cco11g1676 1024 CDD IF2_eIF5B 498 664 - -
Cco11g1676 1024 ProSitePatterns Initiation factor 2 signature. 957 979 IPR000178 GO:0003743(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0006413(InterPro)
Cco11g1676 1024 MobiDBLite consensus disorder prediction 124 146 - -
Cco11g1676 1024 Pfam Translation-initiation factor 2 802 896 IPR023115 -
Cco11g1676 1024 NCBIfam small GTP-binding protein domain 497 658 IPR005225 GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1676 K02519 - - csv:101216442 1830.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1558 Cco-Chr7:29621595 Cco11g1676 Cco-Chr11:29598577 5.50E-109 dispersed
Cco09g0963 Cco-Chr9:9069431 Cco11g1676 Cco-Chr11:29598577 6.80E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g959 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01584 Cam11g1651 Cec11g1679 Cco11g1676 Clacu11g1808 Cmu11g1622 Cre11g2038 . . . . Lsi04g01862 . . Cme07g00769 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00885 Cme01g01542
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004219 3 2 2 2 2 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 5 1 41