Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1679 ATGGATTTCGTTTCGAATTCACTGGCTTGCAAGACTCTCCCTTGCCGGACTCTGTTTCCGCCGTGCGCAACATCTTCCCGCCGCCGCCAATGGTTGCCTTCTTCACTCTTCAGTGCAGGCAAGCGAGTCAGAGAGCTTCGCTGCGAGTTCGAAGTGAACGTTAATGGCGCTCTTTCCAGCGACTTCGACCCTCGTTCCGTTGACAGGAAAAAAGCATTGGAGGCAGCAATGAATGAAATAAATAGCTCATTTGGGAAAGGAAGTGTTACACGGCTTGGAAGTGCTGGTGGAGCATTAGTGGAAACTTTCCCAAGTGGCTGTTTGACTTTAGATTGTGCCTTAGGTGGTGGCCTTCCTAAAGGCAGAATTGTCGAGATATTTGGACCAGAAAGTAGTGGAAAGACCACCCTAGCATTGCATGCAATTGCAGAAGTACAGAAACTAGGAGGAAATGCGATGCTTGTAGATGCAGAGCATGCCTTTGATCCAGCATATTCTAAAGCTGTAGGAGTGGATGTAGAAAATTTAATTGTATGCCAACCTGATCATGGAGAGATGGCACTTGAGATTGCAGATCGCATGTGTAGATCTGGTGCTGTAGATCTCATTTGTGTTGATTCTGTCTCTGCTCTTACACCAAGAGCAGAAATCGAAGGTGAGATCGGTATGCAGCAAATGGGTTTGCAAGCACGCCTCATGAGTCAAGCTCTTCGTAAAATGTCTGGAAATGCCTCAAAAGCTGGTTGCACTCTCATATTTTTGAATCAAATACGATATAAGATTGGTGTGTATTATGGAAATCCAGAAGTGACGAGTGGAGGGATTGCACTGAAGTTCTTTGCCTCACTTCGACTTGAAATACGTCCTATTGGGAAGCTAAAGTCTGCTAAAGGAGATGAAGAAATTGGGATTCGAGTTCGTGTTAGAGTCCAAAAGAGCAAGGTGTCGAGGCCATACAAGCAAGCTGAATTTGAAATTATCTTTGGAGAGGGAGTCGGTAAACTGGGTTGCATTTTAGATTGTGCTGAAATTATGGACGTTGTAGTGAAAAAAGGCTCGTGGTACAGTTACGGGGACCACAGGTTGGGACAAGGAAGAGACAGAGCTCTGCAATACTTAAAAGATAATCCTGCTCTTCAAGACGAAATTGAGAAGGCTGTGCAGACCATGCTGACTAGTGGAACTGTTCAAATGGGATTTCAATCTATTAGAAAGCCATTTCCGAATCAAGAAGAGGTACTTGAAGAGCTCGACTAA 1257 44.87 MDFVSNSLACKTLPCRTLFPPCATSSRRRQWLPSSLFSAGKRVRELRCEFEVNVNGALSSDFDPRSVDRKKALEAAMNEINSSFGKGSVTRLGSAGGALVETFPSGCLTLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKAVGVDVENLIVCQPDHGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRPIGKLKSAKGDEEIGIRVRVRVQKSKVSRPYKQAEFEIIFGEGVGKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKAVQTMLTSGTVQMGFQSIRKPFPNQEEVLEELD 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29617504 29623400 - CcPI632755_11g016790.1 Cco11g1679 192915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1679 418 Gene3D - 98 401 IPR027417 -
Cco11g1679 418 PRINTS RecA protein signature 156 185 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cco11g1679 418 PRINTS RecA protein signature 308 337 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cco11g1679 418 PRINTS RecA protein signature 190 219 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cco11g1679 418 PRINTS RecA protein signature 362 379 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cco11g1679 418 PRINTS RecA protein signature 273 301 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cco11g1679 418 PRINTS RecA protein signature 228 257 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cco11g1679 418 ProSiteProfiles RecA family profile 2. 262 337 IPR020587 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Cco11g1679 418 ProSitePatterns recA signature. 276 284 IPR020584 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Cco11g1679 418 Pfam recA bacterial DNA recombination protein 71 332 IPR049428 -
Cco11g1679 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 332 IPR027417 -
Cco11g1679 418 NCBIfam recombinase RecA 68 388 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cco11g1679 418 FunFam DNA repair protein recA 1 like 98 393 - -
Cco11g1679 418 Pfam RecA C-terminal domain 336 389 IPR049261 -
Cco11g1679 418 ProSiteProfiles RecA family profile 1. 99 257 IPR020588 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0140664(InterPro)
Cco11g1679 418 PANTHER RECA 51 402 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cco11g1679 418 SUPERFAMILY RecA protein, C-terminal domain 334 389 IPR023400 -
Cco11g1679 418 Hamap Protein RecA [recA]. 69 394 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cco11g1679 418 SMART AAA_5 120 291 IPR003593 GO:0016887(InterPro)
Cco11g1679 418 CDD RecA 100 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1679 K03553 - - csv:101216994 767.689
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0534 Cco-Chr4:17288720 Cco11g1679 Cco-Chr11:29617504 5.50E-47 dispersed
Cco11g1679 Cco-Chr11:29617504 Cco11g0195 Cco-Chr11:1891240 7.00E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g966 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01587 Cam11g1654 Cec11g1682 Cco11g1679 Clacu11g1811 Cmu11g1625 Cre11g2041 Cone6ag0287 Cone9ag0322 . . Lsi04g01865 . . Cme07g00767 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009642 1 2 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 2 1 1 2 1 1 31