Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1713 ATGATCCCTTTCAAGCAAGCATCCATTGATGTCAGCTCCTCAATTTCTCCGGTAAGATTCGATTATTGTATGTGTTCGGCTGGCCTTGGAAATTCAATGCAGCAAATGAAAGCTTTGACCCGCAAATTGAGCACAAAAGAGGAACTGAAGAAAGTAAAACTTATGACGTCAACTGTTGATGAAGATGATAGGGAGCCAGCCATGGAGTCTGGCGAATCCGATGAAGGAAAAGTTGTTCGAGAAGTCTGCGCAAATGGGGTCTGCATTAAAACAACGGAAGTAGAAGCAAAGCTCGATGAGGGAAATATCCAAGAGGCAGAATCTTCACTACGGGAAGGGTTATCTCTCAATTTTGAGGAAGCCAGAGCCCTTCTTGGGAAGTTGGAATATCAGAGAGGTAATGTTGAAGGTGCTCTACGTGTGTTTGATGGCATTGATCTCCAAGCAGCTATTCAACGATTACAGCCTTGCGTTACTGAGAAGACGCCTCCAAAAAAAGGACGTGCTCGCTCTGAATCTCAACATGCAGTTTCGCAGCATGCTGCAAACCTTGTTCTTGAAGCCATATATTTAAAAGTGAAGTCTCTTCAGAAGCTAGGGAGAGTAACTGAGGCTGCTGATGAGTGTACTAGTGTACTTGATGCTGTAGAGAAGATATTCCACCAAGGAATTCCTGATGGGCAAGTGGATAGTAGATTGCAAGATACTGTCAGTCAGGCTGTAGAACTCCTCCCTGAGCTATGGAAGCAGGCTGGCTGTTTCCAGGAAGCAATATCTGCCTATAGACGTGCCCTCCTAAGCCAATGGAACCTCAATAATGAAACCTGTGCTAGGATCCAGAAAGGATTTGCTGTATTTTTGCTTTACAGTGGAGTAGAGGCTGGTCCTCCTAGTTTAGCTGTTCAACTTGAAGGTTCATATGTACCAAAAAATAATTTGGAAGAAGCAATTCTACTTTTGATGGTTCTTGTGAAGAAATGTTACCTTGGTAAGATAAAATGGGATCCATCAGTGATGGAGCACCTAATATTTGCTCTATCCTTATGTAGTCAGACATCTGTTTTAGCAAAACAACTTGAAGAGGTCATGCCTGGAGTATATCACCGTGTAGATCGTTGGAAGTCTTTATCTCTTTGTTATTTTGCAGCAGGTCAGAATAAAGTTGCCTTAAATCTTCTGAGAAAGTCTCTACACAAACACGAGCAACCAGATGATGTGGCAGCCTTATTATTGGCTGCCAAGATCTGTAGTGAGGATCCTTATCTCGCGGCTGAAGGTGTTGGTTATGCCCAGCGGGCAATGAACAATTCTATAGAAAATGAAGAGCATTTAAGGGGTGTGGGTCTTCGTTTGTTAGGTCTTTGTTTGGGAAAACAAGCCAAAATGGCTTCCTCTGACTTTGAGAGGTCCCGTCTTCAGTCAGAGGCATTGAAATCTCTTGAGGCAGCAAGTGGTCTGGAGAGCAATAACTTAGATTTGATGCTTGAGTTAGGAGTACAATATTCAGAATATCGGAATTTGAATGCTGCTCTGCAATATGCAAAGAAGTTTATTGATGAAACTGGTGGTTCTGTCTTAAAAGGCTGGCAGTTGCTTGCTCTTGTTTTGTCTGCCCAAAAGAGATTTTCAGAGGCTGAAGTGGTTACTGATGCTGCAATGGATGAGACCACAAAATGGGAACAGGGACCACTTCTCAGACTCAAGGCAAAGCTGAAGGTCTCTCAATCATTACATATGGATGCTATTGAAACTTACCGTTATCTCCTTGCATTAGTTCAAGCGCAAAAGAAATCGTTTGGGCCTCTCCGAATTGTCCCTCAGGTTGAAGATGATAAAGTGAATGAATTTGAAGTGTGGAATGGTCTAGCCAATTTATACTCCAGCCTTTCACATTGGAAAGATGCAGAGATATGTCTAGGAAAAGCAAGAGAGCTGAAGGAGTTCTCCCCAGAAGTACTACATACTGAAGGTCTAATGTGTGAAGGACGTGAGAAAATACAAGAAGCTCTAGCTGCTTACATTAATGCTCTCCTACTCGAACCGTCTTATGTTCCTTGCAAGGTTTTGATTGGTGCCCTTTGGTCGAAAGCAGGCCCAGATGCATTGCCTATAGCGAGAAGCTTACTTTCAGACGCATTGAGATTAGATCCTACCAACCGTAAGGCTTGGTTTTACTTAGGGGTCATTCATAGGGACGAAGGACGAATGGCCGATGCCATAGACTGTTTCCAGGCAGCCGCCATGCTTGAAGAATCAGATCCCATTGAAAGCTTCAGCAGTATTCTCTAG 2289 43.29 MIPFKQASIDVSSSISPVRFDYCMCSAGLGNSMQQMKALTRKLSTKEELKKVKLMTSTVDEDDREPAMESGESDEGKVVREVCANGVCIKTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPCVTEKTPPKKGRARSESQHAVSQHAANLVLEAIYLKVKSLQKLGRVTEAADECTSVLDAVEKIFHQGIPDGQVDSRLQDTVSQAVELLPELWKQAGCFQEAISAYRRALLSQWNLNNETCARIQKGFAVFLLYSGVEAGPPSLAVQLEGSYVPKNNLEEAILLLMVLVKKCYLGKIKWDPSVMEHLIFALSLCSQTSVLAKQLEEVMPGVYHRVDRWKSLSLCYFAAGQNKVALNLLRKSLHKHEQPDDVAALLLAAKICSEDPYLAAEGVGYAQRAMNNSIENEEHLRGVGLRLLGLCLGKQAKMASSDFERSRLQSEALKSLEAASGLESNNLDLMLELGVQYSEYRNLNAALQYAKKFIDETGGSVLKGWQLLALVLSAQKRFSEAEVVTDAAMDETTKWEQGPLLRLKAKLKVSQSLHMDAIETYRYLLALVQAQKKSFGPLRIVPQVEDDKVNEFEVWNGLANLYSSLSHWKDAEICLGKARELKEFSPEVLHTEGLMCEGREKIQEALAAYINALLLEPSYVPCKVLIGALWSKAGPDALPIARSLLSDALRLDPTNRKAWFYLGVIHRDEGRMADAIDCFQAAAMLEESDPIESFSSIL 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29955511 29960819 - CcPI632755_11g017130.1 Cco11g1713 192949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1713 762 FunFam NPG1 607 756 - -
Cco11g1713 762 Gene3D Tetratricopeptide repeat domain 307 698 IPR011990 GO:0005515(InterPro)
Cco11g1713 762 ProSiteProfiles TPR repeat profile. 720 753 IPR019734 GO:0005515(InterPro)
Cco11g1713 762 PANTHER PROTEIN NPG1 47 760 IPR043376 -
Cco11g1713 762 SUPERFAMILY TPR-like 372 693 IPR011990 GO:0005515(InterPro)
Cco11g1713 762 Gene3D Tetratricopeptide repeat domain 701 758 IPR011990 GO:0005515(InterPro)
Cco11g1713 762 SUPERFAMILY TPR-like 566 750 IPR011990 GO:0005515(InterPro)
Cco11g1713 762 Gene3D Tetratricopeptide repeat domain 93 291 IPR011990 GO:0005515(InterPro)
Cco11g1713 762 SMART tpr_5 720 753 IPR019734 GO:0005515(InterPro)
Cco11g1713 762 SMART tpr_5 650 683 IPR019734 GO:0005515(InterPro)
Cco11g1713 762 SMART tpr_5 526 559 IPR019734 GO:0005515(InterPro)
Cco11g1713 762 SMART tpr_5 616 649 IPR019734 GO:0005515(InterPro)
Cco11g1713 762 SMART tpr_5 370 403 IPR019734 GO:0005515(InterPro)
Cco11g1713 762 Pfam Tetratricopeptide repeat 93 145 - -
Cco11g1713 762 Pfam Tetratricopeptide repeat 704 747 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0473 Cco-Chr5:3794249 Cco11g1713 Cco-Chr11:29955511 3.70E-162 dispersed
Cco08g1835 Cco-Chr8:29361028 Cco11g1713 Cco-Chr11:29955511 1.90E-149 dispersed
Cco11g1713 Cco-Chr11:29955511 Cco07g0122 Cco-Chr7:1313533 1.00E-170 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1713 K21843 - csv:101206641 1337.4