Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1720 ATGCCCCATGATCTCTCTCAGCAAAAACCCAATGAAGACGCGCATGAGCAGAAGAGGACAAGCTGGGTGAAGGGTAAGGAAATGGGGGGAAAGATCATGGGGTGGGTTTTGGCTCTTATGGTGGCTATTCTTGCGCTTTGCATTGGGTTTTCCTTCAAATCCCGATACCCGATCTCCTCCTCCTCTCCCTCCCCTCAACAGAAACTCTTCAAAGTTGATGAGCTAGCTTTGTATAATGGAACAGACGAGGGATTGCCTATCCTTCTCGGAATCCTCGGATCTGTGTTTGATGTCACAAAAGGAAAAACTCACTATGGTGTGGGAGGAGGTTATAATCACTTTGCTGGAAGAGATGCTTCTCGTGCATTTGTATCAGGAAATTTCACAGGGGAAGGACTCACCGATTCTTTGCGGGGTTTGTCAAATGCTGAGATCAAGACTGTTGTTGAATGGCGGAGCTTTTACCAAAAAACCTACACACTTGTAGGTAAGTTGGTGGGTCTTTACTTTGATGATCAAGGAAACCCCACTAAACATTTAAAGGGAGCTGAGGCAAAGGCTGCCAGAGGTGCACAACTTTTGAAGAAACAAAAGAAAGAGGAAGATAAACTGCCAAGTTGTAATTCGAGATGGAGTCAGGGTGAAGGTGGTGAGGTCTGGTGTGATGATGGTTTCCCGAGGTTGGTACAGAGGCCTTTAGAAATTGCATTGACAGGGAAGATGAGCAAGCGGTGCGCTTGCTTTAGGGAAGATCAACTGGGACTGATGATTATGGAGCAGTTAAGATACTGCCTCCTTCAAATCTTTGTTGCTTTAGCTATTTCATTTCTGGTTTCTGCACAGGATCAATCAGGATTCATTAGCATCGACTGTGGAATTTCAGAGAATTCAAGCTACAAAGATAGTGTAACAGACATAAAGTACATTTCTGATGTAAACTTCACACAAACTGGAATAAGTAAGAGCATATCATTAGATTTCAACACCACCACTCTTCCACAGCAGTTCTGGTATGTTAGAAGCTTTCCTGAAGGAGAGAGAAACTGTTACACCATAAAGCTTGCTCAGGGTAAAGGTTACAAGTATTTGATCAGAGCGAGTTTCATGTACGGAAACTATGATGGCCAAGGTACAGCGCCGGCTTTCGATCTGTACATGGGTGTTAATAAATGGGATTCAGTAATACTGCCCAATGAATCCAGCATCATAATCAAAGAAGTTATACATGTACTTCCTACATCTTCCATATACATTTGTCTGGTCAATACTGGCTTTGGATCACCTTTTATATCAGCATTGGAGCTTAGGCTTTTGAAAAATGCAAGTTATGTCACTGATTTTGATTTGCTAGCTCTCCACAGACGGTTGGACGTTGGTTCAACGACCAACAGAGCCATCAGGTACAATGATGATTTTTCTGATAGGATCTGGATGCCCTATAACTTTCTTAACTATAAAATTATAAGTACTTCATCCACAGTTGATTCAGGAGGTAGCAATTCTTATAATCTACCAAGAATTGTCATGAGCACTGCCATCACAACCTATAATGCCAGTGATCCTCTAGAATTTCACTGGGTTCCTGAAGATCCCAGTACAAAATATCATATATTCTTGCACTTTGCTGATTTGGAAAAGCTCCAAGCTAACCAATTAAGGGAATTTAACATCTATCAAAATGGGAATTATCTTCATGGACCATTCTCTCCTGATTACTTGCAGTCAACTACATTGTCTAGCATATCCCCAATGAGTGGAGATGACATTGCATTTTCATTATCAAAAACTAATGCATCAAATCTTCCACCCATCCTCAATGCACTTGAAATCTACATCGTGCTTGACACATCGCAATCACGCACCGATGAACAGGACATTACAGCCCTGATGAACATCAAATCCTTTTATGGATTGAGAAAGAATTGGCAGGGTGATCCATGCCAGCCAAAATCCTTCTTGTGGCTTGGTCTTAATTGTAGCTATGATGACCAGAGTCCTAATAGAATCACCTCCTTGAACTTGTCTTCGAGCGGATTGGTGGGGGAAATAGCTACCTATGTGTCTGAGCTCACATCGTTACAATATTTGGATTTGTCAAACAATAGCTTGAGTGGACCGGTGCCCGGTTTTCTATCCAAATTGCAGTCCTTGAAAGTTTTAGACTTGAGGGACAATCCTCTCCTTGGTTCTATACCAAGTGAACTCATGGATAGATCGAAGAACGGATCCCTTTCAATAAGGGTTGGAGGAAACATGGATTTTTGTGCTTCATCTTCTTGTCAAAAGAAGAAAAAGAGTTACGTTATTACAATTGTAGCAATAGTTTCATCATTGTTTGTCCTCTTAGCTGCAGCAGCAGTATGGATAATATTATGGAGAAAACGAGCCCGAAAACAGCCTGTCATAAGACTCGGATCACTAGAGGAGAAAAAACAGCAGCTATCTTACTCTCAAATAAAGCGTATTACAAACAACTTTGAGAGAAAAATTGGAGAAGGAGGTTTTGCAAAAGTATTCCTCGGTTACTTGGATAATACTCAAGTCGCCGTGAAGGTCCTTAAGTCTTCGGTTCAAGGTTATAAAGAATTTGAAGCAGAGGTTAAACTTTTGTTGAGAATTCATCATCGAAACTTGACGAGCCTTATCGGATACTGCTGTGAAAAAACCAACCTGGTTCTAATTTATGAGTACATAAATAATGGCAACTTAAAAGAGCATCTATCAGGCGACAAAGTTGGTGTCCTCAGTTGGGAGGAAAGGATGCAAGTAGCAGTCAATGCAGCGCAAGGGTTGGAGTATCTGCATCATGGTTGTAAGCCACCAATTGTTCACAGAGATGTGAAGTCTGCAAACATCCTTTTGAATGACAGATTCCAAGCTAAAATAGCTGATTTTGGTCTATCCAAGAGTTTTCCGACCGAAAGCCATACTCATTTGACAACTGTTGTTGCAGGGACCGATGGTTATCTTGACCCCGAGTATTACGCAACTGGCTGGTTGACTGAGAAAAGCGATGTATATAGTTTTGGAGTTCTTATATTGGAAGTAGTCACTTCCCGTCCAGTCCTCATGATTGATAGAGCTTCTTCACAGAAATATCATATAAGCCAATGGGTAATGCACTTGATGAAAACAGGTGATATAAGGAGCATTGTTGATCAGAGGGTGAGGGAAAACTTCGACTTGAGTTCTGCTTGGAAGGCAGTGGAGATTGCTATGAAATGTTTGTCATTGAATTCCATTGATAGGCCAAACATGAAAGAGGTAGTTACGGTGTTGAGTGAGTGTTTGGCGTTAGAGAAAGCTCGAAAACGAAGAAACGTCGATTCTAATATGGGAAAATCAAATGCAGTTAGTAGGAATTTCAGAGAGAGCGAAGGAGGCTGCAAGCAACTCATGATGAACCAAGAAATAGCCCAAGTGGTTCAAGATGCTGTGAAGCAATGA 3447 41.46 MPHDLSQQKPNEDAHEQKRTSWVKGKEMGGKIMGWVLALMVAILALCIGFSFKSRYPISSSSPSPQQKLFKVDELALYNGTDEGLPILLGILGSVFDVTKGKTHYGVGGGYNHFAGRDASRAFVSGNFTGEGLTDSLRGLSNAEIKTVVEWRSFYQKTYTLVGKLVGLYFDDQGNPTKHLKGAEAKAARGAQLLKKQKKEEDKLPSCNSRWSQGEGGEVWCDDGFPRLVQRPLEIALTGKMSKRCACFREDQLGLMIMEQLRYCLLQIFVALAISFLVSAQDQSGFISIDCGISENSSYKDSVTDIKYISDVNFTQTGISKSISLDFNTTTLPQQFWYVRSFPEGERNCYTIKLAQGKGYKYLIRASFMYGNYDGQGTAPAFDLYMGVNKWDSVILPNESSIIIKEVIHVLPTSSIYICLVNTGFGSPFISALELRLLKNASYVTDFDLLALHRRLDVGSTTNRAIRYNDDFSDRIWMPYNFLNYKIISTSSTVDSGGSNSYNLPRIVMSTAITTYNASDPLEFHWVPEDPSTKYHIFLHFADLEKLQANQLREFNIYQNGNYLHGPFSPDYLQSTTLSSISPMSGDDIAFSLSKTNASNLPPILNALEIYIVLDTSQSRTDEQDITALMNIKSFYGLRKNWQGDPCQPKSFLWLGLNCSYDDQSPNRITSLNLSSSGLVGEIATYVSELTSLQYLDLSNNSLSGPVPGFLSKLQSLKVLDLRDNPLLGSIPSELMDRSKNGSLSIRVGGNMDFCASSSCQKKKKSYVITIVAIVSSLFVLLAAAAVWIILWRKRARKQPVIRLGSLEEKKQQLSYSQIKRITNNFERKIGEGGFAKVFLGYLDNTQVAVKVLKSSVQGYKEFEAEVKLLLRIHHRNLTSLIGYCCEKTNLVLIYEYINNGNLKEHLSGDKVGVLSWEERMQVAVNAAQGLEYLHHGCKPPIVHRDVKSANILLNDRFQAKIADFGLSKSFPTESHTHLTTVVAGTDGYLDPEYYATGWLTEKSDVYSFGVLILEVVTSRPVLMIDRASSQKYHISQWVMHLMKTGDIRSIVDQRVRENFDLSSAWKAVEIAMKCLSLNSIDRPNMKEVVTVLSECLALEKARKRRNVDSNMGKSNAVSRNFRESEGGCKQLMMNQEIAQVVQDAVKQ 1148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30038894 30051706 + CcPI632755_11g017200.1 Cco11g1720 192956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1720 1148 CDD STKc_IRAK 830 1095 - -
Cco11g1720 1148 SUPERFAMILY Protein kinase-like (PK-like) 809 1093 IPR011009 -
Cco11g1720 1148 PANTHER OS07G0107800 PROTEIN-RELATED 279 1102 - -
Cco11g1720 1148 Pfam Malectin-like domain 289 612 IPR024788 -
Cco11g1720 1148 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 64 166 IPR036400 -
Cco11g1720 1148 SMART Cyt_b5_2 70 166 IPR001199 -
Cco11g1720 1148 ProSitePatterns Protein kinases ATP-binding region signature. 830 851 IPR017441 GO:0005524(InterPro)
Cco11g1720 1148 ProSitePatterns Serine/Threonine protein kinases active-site signature. 942 954 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1720 1148 SMART serkin_6 824 1097 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1720 1148 ProSiteProfiles Protein kinase domain profile. 824 1097 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1720 1148 Gene3D - 62 167 IPR036400 -
Cco11g1720 1148 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 898 1106 - -
Cco11g1720 1148 Gene3D Ribonuclease Inhibitor 624 747 IPR032675 -
Cco11g1720 1148 Gene3D Phosphorylase Kinase; domain 1 805 897 - -
Cco11g1720 1148 Gene3D Transferase(Phosphotransferase) domain 1 898 1121 - -
Cco11g1720 1148 Pfam Cytochrome b5-like Heme/Steroid binding domain 73 130 IPR001199 -
Cco11g1720 1148 MobiDBLite consensus disorder prediction 1 22 - -
Cco11g1720 1148 Pfam Leucine rich repeat 668 727 IPR001611 GO:0005515(InterPro)
Cco11g1720 1148 Pfam Protein kinase domain 826 1090 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1720 1148 FunFam Leucine-rich repeat receptor-like kinase 624 757 - -
Cco11g1720 1148 SUPERFAMILY L domain-like 627 736 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0035 Cco-Chr9:315591 Cco11g1720 Cco-Chr11:30038894 1.10E-202 dispersed
Cco09g0036 Cco-Chr9:326894 Cco11g1720 Cco-Chr11:30038894 6.70E-198 dispersed
Cco10g2052 Cco-Chr10:33903821 Cco11g1720 Cco-Chr11:30038894 6.40E-106 dispersed
Cco11g1720 Cco-Chr11:30038894 Cco05g2803 Cco-Chr5:35769121 4.40E-64 dispersed
Cco11g0459 Cco-Chr11:4829412 Cco11g1720 Cco-Chr11:30038894 4.30E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87260 PF12819 Malectin_like 3.40E-110 CL0202 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1720 - - - 0.0