Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1762 ATGTCGTCCGTAGGAGCTACGATTTCAATTTGGTTAATACTTGTGGTATTATTATTATTGGGATGGAGATTTCTAAACTGGATTTGGTTAAAGCCCAAGAAATTAGAGAAGCTTTTAAGACAGCAAGGCTTCGCCGGAAATTCTTACCGGATTCTCTACGGCGACTTGAAGTTCAGAGCCGCCATGAGAGAGCAGGCCATGTCCAAGCCCATGAACTTCTCCAATCATATTGCTCCACGTGTTATTCCTTCTGTTCATCATACCATCCACAAATATGGCAAGAATTCATTTATGTGGTTTGGACCCATACCAAGAGTGCACATCATGGACCCTGAACAACTTAAAATTGTGTTTTCACTTATCAACGATTTCCAAAAGCCAACTATGAATCCCTTTATCAAGTTTCTTGCAGATGGACTTGTAAGTCATGAAGGACCAAAGTGGGTCAAACACAGAAAGATAATCAACCCTGCATTTCATTTGGAAAAGCTTAAGGATATGATACCAGCATTCTATCAAAGTTGTAATGAGATGGTTAGCAAATGGGAAAGCATGGTTTCTGTAGAAGGATCTTATGAATTAGATGTAATGCCTTTTCTAAAAAATATGGCTGCTGATGTGATTTCTCGAACTGCATTTGGGAGTAGTTATGAGAAAGGAAAAAAGATCTTCAAGCTTCAAACTGAACTAGGTGGTTTGGTGATTCAATCTACCTTAGGGGTTTATATTCCAGGATGGAGATTTCTACCTACAAAGTCAAACAATAAAATGAAAGAGATAAGTAAAGAGATATCAACTTTGGTCTTGGGTATTATGAATGAAAGGGAAAAGTCTATGAAGGCAGGCGAAGCTATACAAACTGATTTACTAAGCATTCTCATAGAATCCAATTTGAATGAAATTAAACAACAAGGAAACAATAAAGACATTGGAATGAGCACAGAAGATGTTATTGCTGAATGCAAGCTTTTCTATATTGTTGGGCAAGAAACTACAGCAACATTACTAACTTGGACTATGGTATTATTAAGTTCATACTTAGAATGGCAAGAGCAAGCAAGAGCAGAGGTCTTTGAGATCTTTGGTAACAAGAAACCAGATTATGATGGTTTAAGTCGTCTAAAAATTGTAACTATGATCTTAAACGAGGTTCTCAGGTTATACCCGCCAGTGAGTATGTTTGAACGTCTCATTAAAAAAGAAACAAAACTTGGAAATTTGACTTTACCCGCAGGAGTGATGTTGGGCTTACCAATTGTTCTTATCCAACATGATCATGAGTTATGGGGAGATGATGCAGATGAATTTAAACCAGAAAGATTTTCTGAGGGAGTTTCTAAAGCGACAAAAAATCCAAGTGCTTTTGTACCATTTGGTTGGGGTCCTCGAATGTGCATAGGACTAAACTTTGCCATGATTGAAGCAAAAATGGCATTGTCAACAATCCTACAACGCTTCTCATTTGAGCTTTCCTCATTCTATACACACGCTCCCACCACCTCCTTAACCATGCAGCCTCAACATGGAGCTCATCTCAAACTACACAGACTGTAG 1554 38.16 MSSVGATISIWLILVVLLLLGWRFLNWIWLKPKKLEKLLRQQGFAGNSYRILYGDLKFRAAMREQAMSKPMNFSNHIAPRVIPSVHHTIHKYGKNSFMWFGPIPRVHIMDPEQLKIVFSLINDFQKPTMNPFIKFLADGLVSHEGPKWVKHRKIINPAFHLEKLKDMIPAFYQSCNEMVSKWESMVSVEGSYELDVMPFLKNMAADVISRTAFGSSYEKGKKIFKLQTELGGLVIQSTLGVYIPGWRFLPTKSNNKMKEISKEISTLVLGIMNEREKSMKAGEAIQTDLLSILIESNLNEIKQQGNNKDIGMSTEDVIAECKLFYIVGQETTATLLTWTMVLLSSYLEWQEQARAEVFEIFGNKKPDYDGLSRLKIVTMILNEVLRLYPPVSMFERLIKKETKLGNLTLPAGVMLGLPIVLIQHDHELWGDDADEFKPERFSEGVSKATKNPSAFVPFGWGPRMCIGLNFAMIEAKMALSTILQRFSFELSSFYTHAPTTSLTMQPQHGAHLKLHRL 517
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 30360804 30364992 + CcPI632755_11g017620.1 Cco11g1762 192998
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1762 517 PANTHER CYTOCHROME P450 FAMILY MEMBER 13 510 IPR050665 GO:0004497(PANTHER)
Cco11g1762 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco11g1762 517 Gene3D Cytochrome P450 72 516 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1762 517 SUPERFAMILY Cytochrome P450 79 515 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1762 517 FunFam Cytochrome P450 734A1 29 517 - -
Cco11g1762 517 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1762 517 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1762 517 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1762 517 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1762 517 CDD CYP72 82 512 - -
Cco11g1762 517 Pfam Cytochrome P450 88 498 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1762 517 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1762 517 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1762 517 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1762 517 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1762 517 PRINTS E-class P450 group I signature 203 221 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1762 517 PRINTS E-class P450 group I signature 89 108 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0748 Cco-Chr10:11581371 Cco11g1762 Cco-Chr11:30360804 1.20E-28 dispersed
Cco11g1761 Cco-Chr11:30353230 Cco11g1762 Cco-Chr11:30360804 1.80E-270 tandem
Cco11g1762 Cco-Chr11:30360804 Cco11g1763 Cco-Chr11:30369079 4.50E-274 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1762 - - - 0.0