Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1770 | ATGGATTCCTTCCATGGCTTACCTCCTCTCAAAAGGCTCAGAATCCTTCAAGAACAAGAACAAAATCGGCAGAAGGAGGATCAATCACTCGATTCATGTTCCCTCCCAGCCAAGAAGCGAAAGGGGTCTCGTGATTCATCATTTCTCCTCGTTCCTGACTCTACTTTGCCTCACCGAACCGCCATTTCCGCTTCTCCTTGCTGCTTGCCCACTAAGAAAAGAGTGTGGGCACTTCACCCTGATTTTGCCCCTGAGTCATTGGATCTCAATGTTGAATACAAGCCTCCTCTGGAGGAAGAATCGATATCGAAAACAGAACTAGAGAGAGAGATAAAGGAGAAGGAAGAGGATAAGGAAAAAGAGGTTTCTGATGCTGAGATGGAGATACAAGACGAAGATGAAGACGAAGATGATGGGATTCTCTGTGCGATTTGTCAAAGCACGGATGGGGATCCTTCAGATCCAATCGTGTTCTGCGATGGATGTGATTTGATGGTACACGCTTCGTGTTATGGTAATCCTCTTGTGAAGAGTGTACCTGAAGGAGATTGGTTCTGTATCCAATGCTTAGCTTTTTCGTCTTCCAAGATGGAGAAGAAGGCTTCAGAAACTCCATTTTCATGCTGCCTCTGTCCTCTGAAAGGAGGGGCTATGAAGCCGACGAACGATGGCCGATGGGCTCATATTGTTTGTGGACTCTATGTTCCTGAGGTGTTCTTTGAGGACCCAGATGGGAGAGAAGGGATTGATTGCTCAAAGATTCTGAAGAGGAGATGGACATCCAAATGTTATATCTGCAAAACTTCTAGAGGTTGTGCTATTGATTGCTCAGAGCCTAAATGCAGTTTGGCTTTCCATGTTACTTGTGGGTTGAAGGAGGATCTCTGTATTGAGTATCAAGAAGGAAGAAGATCTGGTGCTATTGTAGCTGGATTCTGCAGAAACCATACAGACTTGTGGAAAAAGCAACAATTAACAGGGAAGTTCAAGATTGTGGCCAGAGATGAAGGTAAGTTGTAG | 1020 | 45.0 | MDSFHGLPPLKRLRILQEQEQNRQKEDQSLDSCSLPAKKRKGSRDSSFLLVPDSTLPHRTAISASPCCLPTKKRVWALHPDFAPESLDLNVEYKPPLEEESISKTELEREIKEKEEDKEKEVSDAEMEIQDEDEDEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKSVPEGDWFCIQCLAFSSSKMEKKASETPFSCCLCPLKGGAMKPTNDGRWAHIVCGLYVPEVFFEDPDGREGIDCSKILKRRWTSKCYICKTSRGCAIDCSEPKCSLAFHVTCGLKEDLCIEYQEGRRSGAIVAGFCRNHTDLWKKQQLTGKFKIVARDEGKL | 339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30411536 | 30413292 | - | CcPI632755_11g017700.1 | Cco11g1770 | 193006 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1770 | 339 | SMART | PHD_3 | 262 | 317 | IPR001965 | - | |
Cco11g1770 | 339 | SMART | PHD_3 | 141 | 190 | IPR001965 | - | |
Cco11g1770 | 339 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 319 | IPR013083 | - | |
Cco11g1770 | 339 | MobiDBLite | consensus disorder prediction | 18 | 46 | - | - | |
Cco11g1770 | 339 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 203 | IPR013083 | - | |
Cco11g1770 | 339 | Pfam | PHD-finger | 142 | 189 | IPR019787 | - | |
Cco11g1770 | 339 | ProSiteProfiles | Zinc finger PHD-type profile. | 139 | 192 | IPR019787 | - | |
Cco11g1770 | 339 | SUPERFAMILY | FYVE/PHD zinc finger | 128 | 196 | IPR011011 | - | |
Cco11g1770 | 339 | PANTHER | PHD FINGER PROTEINS | 94 | 317 | IPR050701 | GO:0006357(PANTHER) | |
Cco11g1770 | 339 | MobiDBLite | consensus disorder prediction | 98 | 132 | - | - | |
Cco11g1770 | 339 | Coils | Coil | 97 | 135 | - | - | |
Cco11g1770 | 339 | CDD | PHD_BRPF_JADE_like | 141 | 189 | - | - | |
Cco11g1770 | 339 | MobiDBLite | consensus disorder prediction | 98 | 125 | - | - | |
Cco11g1770 | 339 | Pfam | PHD-zinc-finger like domain | 207 | 304 | - | - | |
Cco11g1770 | 339 | MobiDBLite | consensus disorder prediction | 18 | 55 | - | - | |
Cco11g1770 | 339 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 205 | 317 | IPR034732 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g0473 | Cco-Chr8:12013077 | Cco11g1770 | Cco-Chr11:30411536 | 1.40E-21 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60307 | PF13832 | zf-HC5HC2H_2 | 5.80E-29 | CL0390 | Cco | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1770 | K11380 | - | csv:101203744 | 590.112 |