Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1770 ATGGATTCCTTCCATGGCTTACCTCCTCTCAAAAGGCTCAGAATCCTTCAAGAACAAGAACAAAATCGGCAGAAGGAGGATCAATCACTCGATTCATGTTCCCTCCCAGCCAAGAAGCGAAAGGGGTCTCGTGATTCATCATTTCTCCTCGTTCCTGACTCTACTTTGCCTCACCGAACCGCCATTTCCGCTTCTCCTTGCTGCTTGCCCACTAAGAAAAGAGTGTGGGCACTTCACCCTGATTTTGCCCCTGAGTCATTGGATCTCAATGTTGAATACAAGCCTCCTCTGGAGGAAGAATCGATATCGAAAACAGAACTAGAGAGAGAGATAAAGGAGAAGGAAGAGGATAAGGAAAAAGAGGTTTCTGATGCTGAGATGGAGATACAAGACGAAGATGAAGACGAAGATGATGGGATTCTCTGTGCGATTTGTCAAAGCACGGATGGGGATCCTTCAGATCCAATCGTGTTCTGCGATGGATGTGATTTGATGGTACACGCTTCGTGTTATGGTAATCCTCTTGTGAAGAGTGTACCTGAAGGAGATTGGTTCTGTATCCAATGCTTAGCTTTTTCGTCTTCCAAGATGGAGAAGAAGGCTTCAGAAACTCCATTTTCATGCTGCCTCTGTCCTCTGAAAGGAGGGGCTATGAAGCCGACGAACGATGGCCGATGGGCTCATATTGTTTGTGGACTCTATGTTCCTGAGGTGTTCTTTGAGGACCCAGATGGGAGAGAAGGGATTGATTGCTCAAAGATTCTGAAGAGGAGATGGACATCCAAATGTTATATCTGCAAAACTTCTAGAGGTTGTGCTATTGATTGCTCAGAGCCTAAATGCAGTTTGGCTTTCCATGTTACTTGTGGGTTGAAGGAGGATCTCTGTATTGAGTATCAAGAAGGAAGAAGATCTGGTGCTATTGTAGCTGGATTCTGCAGAAACCATACAGACTTGTGGAAAAAGCAACAATTAACAGGGAAGTTCAAGATTGTGGCCAGAGATGAAGGTAAGTTGTAG 1020 45.0 MDSFHGLPPLKRLRILQEQEQNRQKEDQSLDSCSLPAKKRKGSRDSSFLLVPDSTLPHRTAISASPCCLPTKKRVWALHPDFAPESLDLNVEYKPPLEEESISKTELEREIKEKEEDKEKEVSDAEMEIQDEDEDEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKSVPEGDWFCIQCLAFSSSKMEKKASETPFSCCLCPLKGGAMKPTNDGRWAHIVCGLYVPEVFFEDPDGREGIDCSKILKRRWTSKCYICKTSRGCAIDCSEPKCSLAFHVTCGLKEDLCIEYQEGRRSGAIVAGFCRNHTDLWKKQQLTGKFKIVARDEGKL 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30411536 30413292 - CcPI632755_11g017700.1 Cco11g1770 193006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1770 339 SMART PHD_3 262 317 IPR001965 -
Cco11g1770 339 SMART PHD_3 141 190 IPR001965 -
Cco11g1770 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 319 IPR013083 -
Cco11g1770 339 MobiDBLite consensus disorder prediction 18 46 - -
Cco11g1770 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 203 IPR013083 -
Cco11g1770 339 Pfam PHD-finger 142 189 IPR019787 -
Cco11g1770 339 ProSiteProfiles Zinc finger PHD-type profile. 139 192 IPR019787 -
Cco11g1770 339 SUPERFAMILY FYVE/PHD zinc finger 128 196 IPR011011 -
Cco11g1770 339 PANTHER PHD FINGER PROTEINS 94 317 IPR050701 GO:0006357(PANTHER)
Cco11g1770 339 MobiDBLite consensus disorder prediction 98 132 - -
Cco11g1770 339 Coils Coil 97 135 - -
Cco11g1770 339 CDD PHD_BRPF_JADE_like 141 189 - -
Cco11g1770 339 MobiDBLite consensus disorder prediction 98 125 - -
Cco11g1770 339 Pfam PHD-zinc-finger like domain 207 304 - -
Cco11g1770 339 MobiDBLite consensus disorder prediction 18 55 - -
Cco11g1770 339 ProSiteProfiles Extended PHD (ePHD) domain profile. 205 317 IPR034732 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0473 Cco-Chr8:12013077 Cco11g1770 Cco-Chr11:30411536 1.40E-21 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60307 PF13832 zf-HC5HC2H_2 5.80E-29 CL0390 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1770 K11380 - csv:101203744 590.112