Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1775 | ATGCCTGGGAATAAGTATAACGGTAACTCAAACGATATTTCAGACCGTATACCAGGTCGAGTGGAAAGGCTTTTGCGAGAAAGAAAGCTAAGGAAAAGCTGTAAGGATTCATATTCAAACGAGGTAAACGACTACATTAAGGAGTCTGAACTAATTGAAAATGACCTTCGTTTGAAAGAAGAAGAAACCGTTGGAATTCCCTGTAAATTTTCGGAAGCTTCTGTAGCCTCGAGGGCCTTCGCCGAAGGATGTGACAAGCAAGATGGCAAGCCTCCCAGACAACGGCTGCTGGTTGTGGCCAATAGGCTGCCCGTCTCTGCAGTTAGGAGGGGTGAAGATTCCTGGTCTCTGGAGATTAGTGCTGGAGGTTTAGTGAGTGCACTTCTGGGGGTGAAGGAATTTGAGGCCAGATGGATTGGTTGGGCTGGTGTAAATGTACCAGATGAGGTGGGACAAAAGGCACTGACTGAAGCTTTGGCTGAAAAGAGGTGTATACCTGTTTTCCTTGATGAAGAGATTGTTCATCAATACTACAATGGTTACTGCAACAACATTTTATGGCCTCTGTTTCATTACCTTGGCCTTCCTCAAGAAGATCGTCTTGCCACCACCCGTAGCTTTCAGTCTCAGTTTGCCGCATACAAGAAGGCAAACCAAATGTTTGCTGATGTAGTTAACAAGCACTATGAGGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTCCTTCCAAAATGCCTCAAGGAACATAATCGTAAGATGAAAGTCGGCTGGTTTCTCCATACACCTTTTCCTTCCTCTGAAATCCACAGAACCCTTCCGTCTCGATCAGAGCTTCTGCGCTCAGTACTTGCTGCTGATCTGGTCGGCTTTCACACATATGATTATGCTCGTCATTTTGTGAGTGCTTGTACTCGTATTCTTGGACTTGAGGGTACACCAGAAGGAGTTGAGGACCAAGGAAAGCTAACACGAGTTGCTGCATTCCCTATTGGTATAGACTCGGATCGATTCATACGTGCACTCAAGATTCCTGAAGTCCAGGAACATATTGAAGAGCTGAAGGAAAGATTCAAAGGTCGAAAGGTAATGCTAGGGGTTGATCGTCTTGATATGATTAAAGGAATACCTCAAAAGATATTAGCATTTGAAAAGTTCTTGGAGGAAAACCCTTATTGGCGTGATAAAGTGGTTTTGCTGCAAATTGCAGTGCCAACAAGAACAGATGTGCCAGAATACCAAAAGCTTACAAGCCAAGTTCATGAAATAGTTGGACGTATTAATGGGAGATTTGGAACATTGACTACTGTGCCTATACATCATCTGGATCGCTCCCTTGATTTTCATGCACTATGTGCACTATATGCTGTAACTGATGTAGCACTTGTCACATCTTTGAGGGATGGAATGAATCTCGTCAGTTATGAGTTCGTTGCTTGCCAGGATGCAAAAAAAGGGGTTTTAATTCTTAGCGAGTTTGCTGGTGCTGCACAATCTCTTGGTGCTGGAGCACTTTTGGTCAACCCCTGGAACATAACAGAAGTCGCCAAATCAATTGATCGAGCATTAAATATGGGTGCTGAAGAAAGAGAAAAACGCCATAGGCATAATTTTCTCCATGTGACGACGCACACTGCCCAGGAATGGGCAGAAACTTTTGTGAGTGAACTTAATGATACAGTCGTTGAAGCTGAACTGAGGATTCGACAATGTCCACCCCTGCTTCCATTTGACAATGCAATTAAACATTATGAGCAATCTACTAATCGATTACTTATACTGGGGTTCAATTCAACATTAACTGAACCAGTGGACACACCCGAGAGAAGAGGTGATCAGATTAGAGAAATGGATCTGAAACTACACCCGGAGTTGAAAGAACCATTGACAGCAATTTGCAACGACCCAAATACGACAGTAGTCATTCTCAGTGGGAGCGACAGAACTGTCTTGGATGATAACTTCGGGGAGTATGACATGTGGTTGGCAGCTGAGAATGGGATGTTTCTACGCTTCACAAGGGGGGACTGGATGACTACAATGCCTGAGCATTTGAATATGGAATGGGTCGACAGTGTGAAGCATGTTTTTGAGTACTTCACAGAGAGAACTCCCCGTTCCCATTTTGAGCTTCGGGAAACTTCACTTGTTTGGAACTATAAATATGCAGATGTTGAGTTTGGAAGGCTTCAAGCAAGGGATATGTTGCAGCATTTATGGACAGGTCCAATTTCTAATGCATCGGTTGATGTTGTTCAAGGTAGCCGATCTGTTGAGGTGCGAGCTGTTGGTGTTACCAAGGGATCAGCAATTGACCGAATATTGGGAGAAATAGTTCATAGCAAGTCCATGACGACTCCAATAGACTATGTCTTGTGTGTAGGCCATTTTCTTGGGAAGGATGAAGATGTCTACACTTTCTTTGAGCCTGAACTTCCATCGGATACTATAGGCATGGCAAGAACCAAGGGAACCGATGGACTTAAGTTAACGGGTGAGAGAAGACCTTCCATCAATGTTCCTCTAAATAGGAATGGATCAAAATCACCTCACAATAAGGGTCGGTCGAGCTCGGAGAAGAGAACTTCAAATCATAACTGTGCAAACGGTCGTAAACCATCACCCGAGAAGATTCAATGGAATGTGCTTGATCTGAAGGCTGAGAACTACTTCTCTTGTGCTGTTGGACGATCTCGGACGAATGCTCGGTATCTGCTCGGATCATCAGATGATGTGGTGACATTCCTAAAGAAGTTGGTAGGTGCAAATGCATTTTCTTGA | 2787 | 43.92 | MPGNKYNGNSNDISDRIPGRVERLLRERKLRKSCKDSYSNEVNDYIKESELIENDLRLKEEETVGIPCKFSEASVASRAFAEGCDKQDGKPPRQRLLVVANRLPVSAVRRGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEVGQKALTEALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEHNRKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSDRFIRALKIPEVQEHIEELKERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDAKKGVLILSEFAGAAQSLGAGALLVNPWNITEVAKSIDRALNMGAEEREKRHRHNFLHVTTHTAQEWAETFVSELNDTVVEAELRIRQCPPLLPFDNAIKHYEQSTNRLLILGFNSTLTEPVDTPERRGDQIREMDLKLHPELKEPLTAICNDPNTTVVILSGSDRTVLDDNFGEYDMWLAAENGMFLRFTRGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPSDTIGMARTKGTDGLKLTGERRPSINVPLNRNGSKSPHNKGRSSSEKRTSNHNCANGRKPSPEKIQWNVLDLKAENYFSCAVGRSRTNARYLLGSSDDVVTFLKKLVGANAFS | 928 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30452428 | 30467908 | - | CcPI632755_11g017750.1 | Cco11g1775 | 193011 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1775 | 928 | MobiDBLite | consensus disorder prediction | 820 | 876 | - | - | |
Cco11g1775 | 928 | FunFam | Alpha,alpha-trehalose-phosphate synthase | 619 | 690 | - | - | |
Cco11g1775 | 928 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 85 | 921 | IPR001830 | GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER) | |
Cco11g1775 | 928 | MobiDBLite | consensus disorder prediction | 840 | 854 | - | - | |
Cco11g1775 | 928 | Coils | Coil | 42 | 62 | - | - | |
Cco11g1775 | 928 | CDD | GT20_TPS | 95 | 560 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Cco11g1775 | 928 | Gene3D | - | 685 | 765 | - | - | |
Cco11g1775 | 928 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 | 87 | 341 | - | - | |
Cco11g1775 | 928 | FunFam | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 | 685 | 765 | - | - | |
Cco11g1775 | 928 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like | 342 | 544 | - | - | |
Cco11g1775 | 928 | Gene3D | - | 618 | 779 | IPR023214 | - | |
Cco11g1775 | 928 | Pfam | Trehalose-phosphatase | 617 | 819 | IPR003337 | GO:0005992(InterPro) | |
Cco11g1775 | 928 | Gene3D | Glycogen Phosphorylase B; | 342 | 544 | - | - | |
Cco11g1775 | 928 | CDD | HAD_TPP | 593 | 813 | - | - | |
Cco11g1775 | 928 | NCBIfam | alpha,alpha-trehalose-phosphate synthase (UDP-forming) | 95 | 560 | IPR012766 | GO:0003825(InterPro)|GO:0005992(InterPro) | |
Cco11g1775 | 928 | Gene3D | Glycogen Phosphorylase B; | 87 | 341 | - | - | |
Cco11g1775 | 928 | Pfam | Glycosyltransferase family 20 | 95 | 560 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Cco11g1775 | 928 | SUPERFAMILY | HAD-like | 592 | 922 | IPR036412 | - | |
Cco11g1775 | 928 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 94 | 563 | - | - | |
Cco11g1775 | 928 | FunFam | Trehalose-6-phosphatase synthase S4 | 731 | 835 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g0149 | Cco-Chr10:1434337 | Cco11g1775 | Cco-Chr11:30452428 | 9.30E-126 | dispersed | |
Cco11g1775 | Cco-Chr11:30452428 | Cco03g0723 | Cco-Chr3:7437906 | 0.00E+00 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1775 | K16055 | - | csv:101204478 | 1824.68 |