Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1775 ATGCCTGGGAATAAGTATAACGGTAACTCAAACGATATTTCAGACCGTATACCAGGTCGAGTGGAAAGGCTTTTGCGAGAAAGAAAGCTAAGGAAAAGCTGTAAGGATTCATATTCAAACGAGGTAAACGACTACATTAAGGAGTCTGAACTAATTGAAAATGACCTTCGTTTGAAAGAAGAAGAAACCGTTGGAATTCCCTGTAAATTTTCGGAAGCTTCTGTAGCCTCGAGGGCCTTCGCCGAAGGATGTGACAAGCAAGATGGCAAGCCTCCCAGACAACGGCTGCTGGTTGTGGCCAATAGGCTGCCCGTCTCTGCAGTTAGGAGGGGTGAAGATTCCTGGTCTCTGGAGATTAGTGCTGGAGGTTTAGTGAGTGCACTTCTGGGGGTGAAGGAATTTGAGGCCAGATGGATTGGTTGGGCTGGTGTAAATGTACCAGATGAGGTGGGACAAAAGGCACTGACTGAAGCTTTGGCTGAAAAGAGGTGTATACCTGTTTTCCTTGATGAAGAGATTGTTCATCAATACTACAATGGTTACTGCAACAACATTTTATGGCCTCTGTTTCATTACCTTGGCCTTCCTCAAGAAGATCGTCTTGCCACCACCCGTAGCTTTCAGTCTCAGTTTGCCGCATACAAGAAGGCAAACCAAATGTTTGCTGATGTAGTTAACAAGCACTATGAGGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTCCTTCCAAAATGCCTCAAGGAACATAATCGTAAGATGAAAGTCGGCTGGTTTCTCCATACACCTTTTCCTTCCTCTGAAATCCACAGAACCCTTCCGTCTCGATCAGAGCTTCTGCGCTCAGTACTTGCTGCTGATCTGGTCGGCTTTCACACATATGATTATGCTCGTCATTTTGTGAGTGCTTGTACTCGTATTCTTGGACTTGAGGGTACACCAGAAGGAGTTGAGGACCAAGGAAAGCTAACACGAGTTGCTGCATTCCCTATTGGTATAGACTCGGATCGATTCATACGTGCACTCAAGATTCCTGAAGTCCAGGAACATATTGAAGAGCTGAAGGAAAGATTCAAAGGTCGAAAGGTAATGCTAGGGGTTGATCGTCTTGATATGATTAAAGGAATACCTCAAAAGATATTAGCATTTGAAAAGTTCTTGGAGGAAAACCCTTATTGGCGTGATAAAGTGGTTTTGCTGCAAATTGCAGTGCCAACAAGAACAGATGTGCCAGAATACCAAAAGCTTACAAGCCAAGTTCATGAAATAGTTGGACGTATTAATGGGAGATTTGGAACATTGACTACTGTGCCTATACATCATCTGGATCGCTCCCTTGATTTTCATGCACTATGTGCACTATATGCTGTAACTGATGTAGCACTTGTCACATCTTTGAGGGATGGAATGAATCTCGTCAGTTATGAGTTCGTTGCTTGCCAGGATGCAAAAAAAGGGGTTTTAATTCTTAGCGAGTTTGCTGGTGCTGCACAATCTCTTGGTGCTGGAGCACTTTTGGTCAACCCCTGGAACATAACAGAAGTCGCCAAATCAATTGATCGAGCATTAAATATGGGTGCTGAAGAAAGAGAAAAACGCCATAGGCATAATTTTCTCCATGTGACGACGCACACTGCCCAGGAATGGGCAGAAACTTTTGTGAGTGAACTTAATGATACAGTCGTTGAAGCTGAACTGAGGATTCGACAATGTCCACCCCTGCTTCCATTTGACAATGCAATTAAACATTATGAGCAATCTACTAATCGATTACTTATACTGGGGTTCAATTCAACATTAACTGAACCAGTGGACACACCCGAGAGAAGAGGTGATCAGATTAGAGAAATGGATCTGAAACTACACCCGGAGTTGAAAGAACCATTGACAGCAATTTGCAACGACCCAAATACGACAGTAGTCATTCTCAGTGGGAGCGACAGAACTGTCTTGGATGATAACTTCGGGGAGTATGACATGTGGTTGGCAGCTGAGAATGGGATGTTTCTACGCTTCACAAGGGGGGACTGGATGACTACAATGCCTGAGCATTTGAATATGGAATGGGTCGACAGTGTGAAGCATGTTTTTGAGTACTTCACAGAGAGAACTCCCCGTTCCCATTTTGAGCTTCGGGAAACTTCACTTGTTTGGAACTATAAATATGCAGATGTTGAGTTTGGAAGGCTTCAAGCAAGGGATATGTTGCAGCATTTATGGACAGGTCCAATTTCTAATGCATCGGTTGATGTTGTTCAAGGTAGCCGATCTGTTGAGGTGCGAGCTGTTGGTGTTACCAAGGGATCAGCAATTGACCGAATATTGGGAGAAATAGTTCATAGCAAGTCCATGACGACTCCAATAGACTATGTCTTGTGTGTAGGCCATTTTCTTGGGAAGGATGAAGATGTCTACACTTTCTTTGAGCCTGAACTTCCATCGGATACTATAGGCATGGCAAGAACCAAGGGAACCGATGGACTTAAGTTAACGGGTGAGAGAAGACCTTCCATCAATGTTCCTCTAAATAGGAATGGATCAAAATCACCTCACAATAAGGGTCGGTCGAGCTCGGAGAAGAGAACTTCAAATCATAACTGTGCAAACGGTCGTAAACCATCACCCGAGAAGATTCAATGGAATGTGCTTGATCTGAAGGCTGAGAACTACTTCTCTTGTGCTGTTGGACGATCTCGGACGAATGCTCGGTATCTGCTCGGATCATCAGATGATGTGGTGACATTCCTAAAGAAGTTGGTAGGTGCAAATGCATTTTCTTGA 2787 43.92 MPGNKYNGNSNDISDRIPGRVERLLRERKLRKSCKDSYSNEVNDYIKESELIENDLRLKEEETVGIPCKFSEASVASRAFAEGCDKQDGKPPRQRLLVVANRLPVSAVRRGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEVGQKALTEALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEHNRKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSDRFIRALKIPEVQEHIEELKERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDAKKGVLILSEFAGAAQSLGAGALLVNPWNITEVAKSIDRALNMGAEEREKRHRHNFLHVTTHTAQEWAETFVSELNDTVVEAELRIRQCPPLLPFDNAIKHYEQSTNRLLILGFNSTLTEPVDTPERRGDQIREMDLKLHPELKEPLTAICNDPNTTVVILSGSDRTVLDDNFGEYDMWLAAENGMFLRFTRGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPSDTIGMARTKGTDGLKLTGERRPSINVPLNRNGSKSPHNKGRSSSEKRTSNHNCANGRKPSPEKIQWNVLDLKAENYFSCAVGRSRTNARYLLGSSDDVVTFLKKLVGANAFS 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30452428 30467908 - CcPI632755_11g017750.1 Cco11g1775 193011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1775 928 MobiDBLite consensus disorder prediction 820 876 - -
Cco11g1775 928 FunFam Alpha,alpha-trehalose-phosphate synthase 619 690 - -
Cco11g1775 928 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 85 921 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cco11g1775 928 MobiDBLite consensus disorder prediction 840 854 - -
Cco11g1775 928 Coils Coil 42 62 - -
Cco11g1775 928 CDD GT20_TPS 95 560 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cco11g1775 928 Gene3D - 685 765 - -
Cco11g1775 928 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 87 341 - -
Cco11g1775 928 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 685 765 - -
Cco11g1775 928 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 342 544 - -
Cco11g1775 928 Gene3D - 618 779 IPR023214 -
Cco11g1775 928 Pfam Trehalose-phosphatase 617 819 IPR003337 GO:0005992(InterPro)
Cco11g1775 928 Gene3D Glycogen Phosphorylase B; 342 544 - -
Cco11g1775 928 CDD HAD_TPP 593 813 - -
Cco11g1775 928 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 95 560 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
Cco11g1775 928 Gene3D Glycogen Phosphorylase B; 87 341 - -
Cco11g1775 928 Pfam Glycosyltransferase family 20 95 560 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cco11g1775 928 SUPERFAMILY HAD-like 592 922 IPR036412 -
Cco11g1775 928 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 94 563 - -
Cco11g1775 928 FunFam Trehalose-6-phosphatase synthase S4 731 835 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0149 Cco-Chr10:1434337 Cco11g1775 Cco-Chr11:30452428 9.30E-126 dispersed
Cco11g1775 Cco-Chr11:30452428 Cco03g0723 Cco-Chr3:7437906 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1775 K16055 - csv:101204478 1824.68