Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1775 ATGCCTGGGAATAAGTATAACGGTAACTCAAACGATATTTCAGACCGTATACCAGGTCGAGTGGAAAGGCTTTTGCGAGAAAGAAAGCTAAGGAAAAGCTGTAAGGATTCATATTCAAACGAGGTAAACGACTACATTAAGGAGTCTGAACTAATTGAAAATGACCTTCGTTTGAAAGAAGAAGAAACCGTTGGAATTCCCTGTAAATTTTCGGAAGCTTCTGTAGCCTCGAGGGCCTTCGCCGAAGGATGTGACAAGCAAGATGGCAAGCCTCCCAGACAACGGCTGCTGGTTGTGGCCAATAGGCTGCCCGTCTCTGCAGTTAGGAGGGGTGAAGATTCCTGGTCTCTGGAGATTAGTGCTGGAGGTTTAGTGAGTGCACTTCTGGGGGTGAAGGAATTTGAGGCCAGATGGATTGGTTGGGCTGGTGTAAATGTACCAGATGAGGTGGGACAAAAGGCACTGACTGAAGCTTTGGCTGAAAAGAGGTGTATACCTGTTTTCCTTGATGAAGAGATTGTTCATCAATACTACAATGGTTACTGCAACAACATTTTATGGCCTCTGTTTCATTACCTTGGCCTTCCTCAAGAAGATCGTCTTGCCACCACCCGTAGCTTTCAGTCTCAGTTTGCCGCATACAAGAAGGCAAACCAAATGTTTGCTGATGTAGTTAACAAGCACTATGAGGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTCCTTCCAAAATGCCTCAAGGAACATAATCGTAAGATGAAAGTCGGCTGGTTTCTCCATACACCTTTTCCTTCCTCTGAAATCCACAGAACCCTTCCGTCTCGATCAGAGCTTCTGCGCTCAGTACTTGCTGCTGATCTGGTCGGCTTTCACACATATGATTATGCTCGTCATTTTGTGAGTGCTTGTACTCGTATTCTTGGACTTGAGGGTACACCAGAAGGAGTTGAGGACCAAGGAAAGCTAACACGAGTTGCTGCATTCCCTATTGGTATAGACTCGGATCGATTCATACGTGCACTCAAGATTCCTGAAGTCCAGGAACATATTGAAGAGCTGAAGGAAAGATTCAAAGGTCGAAAGGTAATGCTAGGGGTTGATCGTCTTGATATGATTAAAGGAATACCTCAAAAGATATTAGCATTTGAAAAGTTCTTGGAGGAAAACCCTTATTGGCGTGATAAAGTGGTTTTGCTGCAAATTGCAGTGCCAACAAGAACAGATGTGCCAGAATACCAAAAGCTTACAAGCCAAGTTCATGAAATAGTTGGACGTATTAATGGGAGATTTGGAACATTGACTACTGTGCCTATACATCATCTGGATCGCTCCCTTGATTTTCATGCACTATGTGCACTATATGCTGTAACTGATGTAGCACTTGTCACATCTTTGAGGGATGGAATGAATCTCGTCAGTTATGAGTTCGTTGCTTGCCAGGATGCAAAAAAAGGGGTTTTAATTCTTAGCGAGTTTGCTGGTGCTGCACAATCTCTTGGTGCTGGAGCACTTTTGGTCAACCCCTGGAACATAACAGAAGTCGCCAAATCAATTGATCGAGCATTAAATATGGGTGCTGAAGAAAGAGAAAAACGCCATAGGCATAATTTTCTCCATGTGACGACGCACACTGCCCAGGAATGGGCAGAAACTTTTGTGAGTGAACTTAATGATACAGTCGTTGAAGCTGAACTGAGGATTCGACAATGTCCACCCCTGCTTCCATTTGACAATGCAATTAAACATTATGAGCAATCTACTAATCGATTACTTATACTGGGGTTCAATTCAACATTAACTGAACCAGTGGACACACCCGAGAGAAGAGGTGATCAGATTAGAGAAATGGATCTGAAACTACACCCGGAGTTGAAAGAACCATTGACAGCAATTTGCAACGACCCAAATACGACAGTAGTCATTCTCAGTGGGAGCGACAGAACTGTCTTGGATGATAACTTCGGGGAGTATGACATGTGGTTGGCAGCTGAGAATGGGATGTTTCTACGCTTCACAAGGGGGGACTGGATGACTACAATGCCTGAGCATTTGAATATGGAATGGGTCGACAGTGTGAAGCATGTTTTTGAGTACTTCACAGAGAGAACTCCCCGTTCCCATTTTGAGCTTCGGGAAACTTCACTTGTTTGGAACTATAAATATGCAGATGTTGAGTTTGGAAGGCTTCAAGCAAGGGATATGTTGCAGCATTTATGGACAGGTCCAATTTCTAATGCATCGGTTGATGTTGTTCAAGGTAGCCGATCTGTTGAGGTGCGAGCTGTTGGTGTTACCAAGGGATCAGCAATTGACCGAATATTGGGAGAAATAGTTCATAGCAAGTCCATGACGACTCCAATAGACTATGTCTTGTGTGTAGGCCATTTTCTTGGGAAGGATGAAGATGTCTACACTTTCTTTGAGCCTGAACTTCCATCGGATACTATAGGCATGGCAAGAACCAAGGGAACCGATGGACTTAAGTTAACGGGTGAGAGAAGACCTTCCATCAATGTTCCTCTAAATAGGAATGGATCAAAATCACCTCACAATAAGGGTCGGTCGAGCTCGGAGAAGAGAACTTCAAATCATAACTGTGCAAACGGTCGTAAACCATCACCCGAGAAGATTCAATGGAATGTGCTTGATCTGAAGGCTGAGAACTACTTCTCTTGTGCTGTTGGACGATCTCGGACGAATGCTCGGTATCTGCTCGGATCATCAGATGATGTGGTGACATTCCTAAAGAAGTTGGTAGGTGCAAATGCATTTTCTTGA 2787 43.92 MPGNKYNGNSNDISDRIPGRVERLLRERKLRKSCKDSYSNEVNDYIKESELIENDLRLKEEETVGIPCKFSEASVASRAFAEGCDKQDGKPPRQRLLVVANRLPVSAVRRGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEVGQKALTEALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEHNRKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSDRFIRALKIPEVQEHIEELKERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDAKKGVLILSEFAGAAQSLGAGALLVNPWNITEVAKSIDRALNMGAEEREKRHRHNFLHVTTHTAQEWAETFVSELNDTVVEAELRIRQCPPLLPFDNAIKHYEQSTNRLLILGFNSTLTEPVDTPERRGDQIREMDLKLHPELKEPLTAICNDPNTTVVILSGSDRTVLDDNFGEYDMWLAAENGMFLRFTRGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPSDTIGMARTKGTDGLKLTGERRPSINVPLNRNGSKSPHNKGRSSSEKRTSNHNCANGRKPSPEKIQWNVLDLKAENYFSCAVGRSRTNARYLLGSSDDVVTFLKKLVGANAFS 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30452428 30467908 - CcPI632755_11g017750.1 Cco11g1775 193011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1775 928 MobiDBLite consensus disorder prediction 820 876 - -
Cco11g1775 928 FunFam Alpha,alpha-trehalose-phosphate synthase 619 690 - -
Cco11g1775 928 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 85 921 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cco11g1775 928 MobiDBLite consensus disorder prediction 840 854 - -
Cco11g1775 928 Coils Coil 42 62 - -
Cco11g1775 928 CDD GT20_TPS 95 560 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cco11g1775 928 Gene3D - 685 765 - -
Cco11g1775 928 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 87 341 - -
Cco11g1775 928 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 685 765 - -
Cco11g1775 928 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 342 544 - -
Cco11g1775 928 Gene3D - 618 779 IPR023214 -
Cco11g1775 928 Pfam Trehalose-phosphatase 617 819 IPR003337 GO:0005992(InterPro)
Cco11g1775 928 Gene3D Glycogen Phosphorylase B; 342 544 - -
Cco11g1775 928 CDD HAD_TPP 593 813 - -
Cco11g1775 928 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 95 560 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
Cco11g1775 928 Gene3D Glycogen Phosphorylase B; 87 341 - -
Cco11g1775 928 Pfam Glycosyltransferase family 20 95 560 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cco11g1775 928 SUPERFAMILY HAD-like 592 922 IPR036412 -
Cco11g1775 928 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 94 563 - -
Cco11g1775 928 FunFam Trehalose-6-phosphatase synthase S4 731 835 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1775 K16055 - - csv:101204478 1824.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0149 Cco-Chr10:1434337 Cco11g1775 Cco-Chr11:30452428 9.30E-126 dispersed
Cco11g1775 Cco-Chr11:30452428 Cco03g0723 Cco-Chr3:7437906 0.00E+00 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g27 . . . . . Bpe08g00994 . . . . Cma01g01269 . Car01g01086 . Sed04g2496 . Cpe02g00653 Bhi09g03568 Tan01g4254 Cmetu07g2039 . Hepe01g1467 . . Cla11g01682 Cam11g1750 Cec11g1774 Cco11g1775 Clacu11g1908 Cmu11g1719 Cre11g2131 Cone6ag0210 Cone9ag0238 . . Lsi04g01978 Csa04g02256 . Cme07g00497 . . . . . . Bma07g01154 . . Cmo01g01325 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco01g0191 . 21 575 Trehalose Biosynthesis Gene Families AT4G24040 58.0 1.5e-194 676.4
Cco07g0256 . 1 817 Trehalose Biosynthesis Gene Families AT1G06410 76.0 0.0e+00 1327.0
Cco04g2173 . 1 826 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1322.4
Cco10g0149 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1151.7
Cco05g2787 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.9 0.0e+00 1093.2
Cco06g1891 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.5 4.4e-303 1037.3
Cco11g1775 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.4 1.7e-249 859.0
Cco03g0723 . 95 703 Trehalose Biosynthesis Gene Families AT1G16980 64.6 5.8e-242 833.9
Cco05g2787 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.6 0.0e+00 1348.2
Cco06g1891 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.2 0.0e+00 1212.2
Cco10g0149 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1106.3
Cco04g2173 . 5 827 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1093.2
Cco07g0256 . 1 818 Trehalose Biosynthesis Gene Families AT1G23870 59.8 8.2e-314 1072.8
Cco05g2787 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.3 0.0e+00 1330.1
Cco06g1891 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.2 0.0e+00 1234.6
Cco10g0149 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.1 0.0e+00 1078.9
Cco04g2173 . 6 831 Trehalose Biosynthesis Gene Families AT1G60140 61.1 4.0e-312 1067.4
Cco07g0256 . 1 821 Trehalose Biosynthesis Gene Families AT1G60140 59.6 1.0e-307 1052.7
Cco10g0149 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1271.9
Cco04g2173 . 2 827 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1144.4
Cco07g0256 . 1 820 Trehalose Biosynthesis Gene Families AT1G68020 63.0 0.0e+00 1128.2
Cco05g2787 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1109.4
Cco06g1891 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1094.3
Cco05g2787 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.1 0.0e+00 1194.9
Cco06g1891 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1103.6
Cco04g2173 . 6 830 Trehalose Biosynthesis Gene Families AT1G70290 57.9 3.2e-290 994.6
Cco07g0256 . 1 827 Trehalose Biosynthesis Gene Families AT1G70290 56.9 2.1e-286 981.9
Cco10g0149 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.8 1.8e-285 978.8
Cco11g1775 . 1 921 Trehalose Biosynthesis Gene Families AT1G78580 79.6 0.0e+00 1483.4
Cco03g0723 . 10 939 Trehalose Biosynthesis Gene Families AT1G78580 73.5 0.0e+00 1362.8
Cco05g2787 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.2 4.6e-308 1053.9
Cco06g1891 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.1 1.6e-300 1028.9
Cco10g0149 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 1.5e-298 1022.3
Cco04g2173 . 1 823 Trehalose Biosynthesis Gene Families AT2G18700 59.7 2.5e-298 1021.5
Cco07g0256 . 31 817 Trehalose Biosynthesis Gene Families AT2G18700 60.2 2.1e-292 1001.9
Cco10g0149 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.6 0.0e+00 1378.6
Cco04g2173 . 3 819 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1162.1
Cco05g2787 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1136.3
Cco07g0256 . 1 825 Trehalose Biosynthesis Gene Families AT4G17770 61.9 0.0e+00 1127.5
Cco06g1891 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.5 0.0e+00 1108.2
Cco11g1775 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.7 1.1e-305 1045.8
Cco03g0723 . 99 940 Trehalose Biosynthesis Gene Families AT4G27550 59.2 2.2e-288 988.4
Cco11g1775 . 1 921 Trehalose Biosynthesis Gene Families AT1G78580 79.6 0.0e+00 1483.4
Cco03g0723 . 10 939 Trehalose Biosynthesis Gene Families AT1G78580 73.5 0.0e+00 1362.8
Cco11g1775 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.4 1.7e-249 859.0
Cco03g0723 . 95 703 Trehalose Biosynthesis Gene Families AT1G16980 64.6 5.8e-242 833.9
Cco11g1775 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 2.4e-194 676.0
Cco03g0723 . 100 618 Trehalose Biosynthesis Gene Families AT1G17000 61.5 2.7e-190 662.5
Cco11g1775 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.7 1.1e-305 1045.8
Cco03g0723 . 99 940 Trehalose Biosynthesis Gene Families AT4G27550 59.2 2.2e-288 988.4
Cco10g0149 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.6 0.0e+00 1378.6
Cco04g2173 . 3 819 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1162.1
Cco05g2787 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1136.3
Cco07g0256 . 1 825 Trehalose Biosynthesis Gene Families AT4G17770 61.9 0.0e+00 1127.5
Cco06g1891 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.5 0.0e+00 1108.2
Cco10g0149 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1271.9
Cco04g2173 . 2 827 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1144.4
Cco07g0256 . 1 820 Trehalose Biosynthesis Gene Families AT1G68020 63.0 0.0e+00 1128.2
Cco05g2787 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1109.4
Cco06g1891 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1094.3
Cco07g0256 . 1 817 Trehalose Biosynthesis Gene Families AT1G06410 76.0 0.0e+00 1327.0
Cco04g2173 . 1 826 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1322.4
Cco10g0149 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1151.7
Cco05g2787 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.9 0.0e+00 1093.2
Cco06g1891 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.5 4.4e-303 1037.3
Cco05g2787 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.1 0.0e+00 1194.9
Cco06g1891 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1103.6
Cco04g2173 . 6 830 Trehalose Biosynthesis Gene Families AT1G70290 57.9 3.2e-290 994.6
Cco07g0256 . 1 827 Trehalose Biosynthesis Gene Families AT1G70290 56.9 2.1e-286 981.9
Cco10g0149 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.8 1.8e-285 978.8
Cco05g2787 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.6 0.0e+00 1348.2
Cco06g1891 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.2 0.0e+00 1212.2
Cco10g0149 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1106.3
Cco04g2173 . 5 827 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1093.2
Cco07g0256 . 1 818 Trehalose Biosynthesis Gene Families AT1G23870 59.8 8.2e-314 1072.8
Cco05g2787 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.3 0.0e+00 1330.1
Cco06g1891 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.2 0.0e+00 1234.6
Cco10g0149 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.1 0.0e+00 1078.9
Cco04g2173 . 6 831 Trehalose Biosynthesis Gene Families AT1G60140 61.1 4.0e-312 1067.4
Cco07g0256 . 1 821 Trehalose Biosynthesis Gene Families AT1G60140 59.6 1.0e-307 1052.7
Cco05g2787 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.2 4.6e-308 1053.9
Cco06g1891 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.1 1.6e-300 1028.9
Cco10g0149 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 1.5e-298 1022.3
Cco04g2173 . 1 823 Trehalose Biosynthesis Gene Families AT2G18700 59.7 2.5e-298 1021.5
Cco07g0256 . 31 817 Trehalose Biosynthesis Gene Families AT2G18700 60.2 2.1e-292 1001.9
Cco01g0191 . 21 575 Trehalose Biosynthesis Gene Families AT4G24040 58.0 1.5e-194 676.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001443 2 5 3 3 2 1 2 2 1 2 2 2 2 2 2 2 2 4 2 2 2 2 2 2 1 2 2 6 6 1 71