Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1777 ATGCGAGAGGTTAACCAAAAGATCCGAGGGAGTTTTAAATATATCAGAAGTTCACAGCTCACTCAAGGGAGGTTCAATGAGATGGCTCATCAAGTAGGGATCTCCAGTCAGAAGATATTGGTCCCTGACAGTCCTGGTCAATGGAATTCAACATATTTCATGCTCGAGACAGCCGTGGAATACAAGGGTGCATTTGAACTTCTTCAAAAGCATGATCCTCATTATGCATCAGCTCTTACTGCTTTAGAGTGGGAATGGACAACTAGTGTTGCTGACTATTTGAAACTTTTTGTCGAAATCGTGAACATCTTCTCTGGCAACAAATCTCCTACAGCAAATATATATTTTCCTGAGATATGCGATGTTCACATTCAATTAATCGAGTGGTGTAAGAGCTCGAATAATTTTCTGAACTCCCTTGCATCGAAAGTAAAGGCCAAGTTTGATAAATATTGGAGCAAATGCAGTCTGGCTTTGGCAGTTGCTGCAGTTCTAGATCCAAGGTTCAAAATGAAATTGGTAGAGTACTACTATTCACAGATTTATTGTAGTACGGCCTTGGATCGGATTAAGGAAGTTTCTGATGGTATCAAAGAACTTTATGATGCATATTCAATCTGCTTTACAATGGTTGATGAAGGTTCAGCTTTGCGTGGAAGCAGTTTACCTGGGACGAGCAACGACTCTAGGGACAGGCTAAAAGGATTTGACAAGTTCCTTCATGAGACTTCCCAAGAACTTGAAGATCCGAGGCCATTGTCTACTGCTTCGTACATACCACTTCTGCTCGGAACCAATTAA 801 41.07 MREVNQKIRGSFKYIRSSQLTQGRFNEMAHQVGISSQKILVPDSPGQWNSTYFMLETAVEYKGAFELLQKHDPHYASALTALEWEWTTSVADYLKLFVEIVNIFSGNKSPTANIYFPEICDVHIQLIEWCKSSNNFLNSLASKVKAKFDKYWSKCSLALAVAAVLDPRFKMKLVEYYYSQIYCSTALDRIKEVSDGIKELYDAYSICFTMVDEGSALRGSSLPGTSNDSRDRLKGFDKFLHETSQELEDPRPLSTASYIPLLLGTN 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30496221 30497374 - CcPI632755_11g017770.1 Cco11g1777 193013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1777 266 SUPERFAMILY Ribonuclease H-like 7 214 IPR012337 -
Cco11g1777 266 PANTHER BED FINGER-RELATED 1 226 IPR045259 -
Cco11g1777 266 Pfam hAT-like transposase, RNase-H fold 105 204 IPR025525 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1777 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1302 Cco-Chr7:27088433 Cco11g1777 Cco-Chr11:30496221 1.80E-36 dispersed
Cco09g2429 Cco-Chr9:38529340 Cco11g1777 Cco-Chr11:30496221 7.00E-69 dispersed
Cco11g0800 Cco-Chr11:9133038 Cco11g1777 Cco-Chr11:30496221 3.20E-23 dispersed
Cco11g1777 Cco-Chr11:30496221 Cco06g1323 Cco-Chr6:23524815 2.50E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g29 . . . . . . . . . . . . . Car09g00597 . Cpe06g00527 . . . . . . . . Cla11g01688 Cam11g1752 Cec11g1776 Cco11g1777 Clacu11g1912 . Cre11g2133 . . . . Lsi04g01979 . . . . . . . . . . . . . Cmo09g00658 . . . . . . . . . . . . . . . . . . . . . . Chy07g00984 Cme07g01359