Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1781 ATGTTCATGGCTCGATTCCTCGCCGTCTTTCTTTTCTTTTCTCTCGTTTCCGCCGTCCCTCCGCTGGCGGCCGACGAAGTTGAAGCGTTAAAGGAGATCGGAAAGGCATTGGGGAAGGCGGACTGGAATTTCACGGCGAATCCATGCGGCGGTTTGGGTAGCGGTTGGATAACCAATTCTTTCGAAACGGGGTTTGTTAATAATCTCACATGCAACTGCACCTTCCAGAATAACTCCGTTTGTCACGTCACTAAAATCCGTCTAAGGTCACAGAACCTTCCAGGCATTCTGCCGCCACAACTAGTGAGGTTGCCTTACTTGGAAGAACTTGACCTTGCCCGCAACTATCTCAGCGGCCCAATTCCTCCAGAATGGGGTGCTTCAAAGCTTGTCAACATTTCCCTTCTTGGAAATCGATTGACGGGTCCAATCCCAAAAGAGATTGGAAACATCAGCACTCTTATAGAGTTGATCCTTGAAGTTAATCAGTTGTCTGGAAGTCTGCCTCCAGAACTTGGAAAGCTGACCAGGTTATCAAGATTACTTCTTTCCTCAAACAACTTTTCTGGGGAGCTCCCATCTTCACTGGGAGCGATAACCACATTGACGGACCTTCGAATTAGTGATAATCACTTCACAGGGTCAATACCCAAGTATATTCAGAATTGGCCGAATCTTGGAAAACTAGGTATTCAGGCAAGCGGGCTGAGTGGACCAATTCCTTCTGAAATTGGACTTCTGACAAAATTATTGGATCTGAGAATCAGCGACTTGAATGGAGGTTCATCGTCCTTTCCACCCCTTAATTCTTTGACAAAATTGAAAACCCTGATATTGAGGAGCTGCAATATAGTTGGGATGCTGCCTGACAATCTTGATGGGTTGGAAAACGTGCAAACCTTAGACTTTAGCTTCAACAAAATTAGTGGACCAATACCTGCCGGCTTTGAAGCTTTGAAGAAAGTGGATAGAATATATTTAACTGGAAACTTGCTAACTGGAGCTGTGCCTCTTTGGATGCTGCAGGAGGGAGAAAACATTGATCTCTCTTATAACACATTTACTGAGACAGATTTTCAGGCCTTGGGTTGTGAAGCACGAAGTTTAAACCTGTTCGCGAGCTCTTCACAGGACAATACTTCTGGAACAGTTTCATGTTTAGCAGGCACATGTGACAAAACTTGGTACTCTCTCCATATCAATTGCGGTGGGAAGGAAGATTTAATAAACGGAACAATCAGGTTTGATGGAGACACAAACACGGGGAAATCATCATTGTTTTTTCAAGGTGGAGCAAATTGGGGATTTAGCAACACTGGTAGTTTTATGGATGATGATCGCTCAACAGACGACTTCATTGCATTAAGTCCACCTGATCTCCCTATGAAAAATCTTGGATTGTACACCAGTGCACGGATTTCTCCCATCTCTCTTACTTATTATGCGTATTGCATGGGTAATGGAAACTACACAGTAAGCCTACATTTTGCTGAGATAGAGTTTAGTAATGACAAATCATACAAAAGCCTTGGCAGACGCATATTTGATGTCTACGTTCAGAGAGAGCTGGTGTTGAAGGATTTTAATATTGCAGAGGCAGCAGGTGGTGTTGGCAAACCTCTTGTAGAGAAATTCACTGTTTCTGTGACTAATGGTACTGTAGAGATCCGCCTATTTTGGGCGGGGAAGGGGACAAATGCAGTCCCTGTAAGAGGAATTTATGGTCCTCTAATTTCAGCCATTTCTGTTGATCCTGACTTTGATCCACCATCAGAAGGTGGAAATGCCATATCCGCTGGAGTGGTTGGAATTGTGGCTGCTGTGGTCTTGGTTATCATCTTGCTTCTAGGGGTCTTGTGGTGGAGAGGCAGCCGAAGAACGAAAAGCACACTTGAACAAGAGTTGAAGGATCTTGATCTCGGAACAGGATCATTTTCATTAAGACAAATCAAAGCTTCCACTAACAATTTTGATGTTGCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGCGTTCTTGCTGATGGCAGTGTAATTGCAGTGAAGCAACTTTCTTCAAAGTCAAAGCAAGGAAATCGTGAATTTTTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTTATGGATGTTGTATTGAAGGAGATCAACTTTTGCTAATATACGAGTATCTGGAAAATAACAGTCTTGCTCGTGCCTTATTCGGACCTGAAGAATATCAACTGAAATTGGATTGGCCAACAAGGCAGAAGATTTGTGTTGGTATTGCTAAAGGTTTAGCATACCTTCACGACGAGTCAAGACTAAAGATCGTTCACCGTGACATCAAAGCTACCAATGTTCTTCTCGACAAAAATCTAAACCCGAAGATTTCTGACTTTGGTTTGGCTAGGCTAGATGACGAAGGAAATACACACATCAGCACACGGGTTGCCGGAACCTATGGATATATGGCACCAGAATACGCCATGCGAGGGTACTTAACTGACAAAGCAGACGTTTATAGTTTTGGTGTGGTAGCATTGGAAATAGTCGGTGGTCGAAGCAACACAAGTTTTGGAACCAAGGCTGATTGCTTATATCTGCTTGATTATGCTAACGTTTTAAAAGAGAGAGGGAATTTACTAGACCTTGTCGATCCACGGTTAGGCTCTGAATTCAACAAGACAGAGGCGATGACGATGATCACTATCGCCCTTCAATGCACGAACATCAGTGCTGCAGACAGACCCTCCATGTCAACAGTAGTAGGCATGCTGGAAGGGAAGATTGGTGTAGAGGAGTTGGTTTCAGATCCAAATATCTCAAAGCAAGATGTGAATGCTATGTGGAGCCACATGTACCACCAGAAAGTGAAAACAATGGGCGAGAGCGAGATACAAAATATGTTGACATGTGAGAGCGAGAGCGAGACCCAAAGTATGTTGATGGATGGACCATGGACTGATTCTTCAATTACTGATAGTGATTGCCTTCCCATCATGGCTGATGCTAGATACTTGGAGAATAGGATTTAG 3042 43.62 MFMARFLAVFLFFSLVSAVPPLAADEVEALKEIGKALGKADWNFTANPCGGLGSGWITNSFETGFVNNLTCNCTFQNNSVCHVTKIRLRSQNLPGILPPQLVRLPYLEELDLARNYLSGPIPPEWGASKLVNISLLGNRLTGPIPKEIGNISTLIELILEVNQLSGSLPPELGKLTRLSRLLLSSNNFSGELPSSLGAITTLTDLRISDNHFTGSIPKYIQNWPNLGKLGIQASGLSGPIPSEIGLLTKLLDLRISDLNGGSSSFPPLNSLTKLKTLILRSCNIVGMLPDNLDGLENVQTLDFSFNKISGPIPAGFEALKKVDRIYLTGNLLTGAVPLWMLQEGENIDLSYNTFTETDFQALGCEARSLNLFASSSQDNTSGTVSCLAGTCDKTWYSLHINCGGKEDLINGTIRFDGDTNTGKSSLFFQGGANWGFSNTGSFMDDDRSTDDFIALSPPDLPMKNLGLYTSARISPISLTYYAYCMGNGNYTVSLHFAEIEFSNDKSYKSLGRRIFDVYVQRELVLKDFNIAEAAGGVGKPLVEKFTVSVTNGTVEIRLFWAGKGTNAVPVRGIYGPLISAISVDPDFDPPSEGGNAISAGVVGIVAAVVLVIILLLGVLWWRGSRRTKSTLEQELKDLDLGTGSFSLRQIKASTNNFDVANKIGEGGFGPVYKGVLADGSVIAVKQLSSKSKQGNREFLNEIGMISALQHPHLVKLYGCCIEGDQLLLIYEYLENNSLARALFGPEEYQLKLDWPTRQKICVGIAKGLAYLHDESRLKIVHRDIKATNVLLDKNLNPKISDFGLARLDDEGNTHISTRVAGTYGYMAPEYAMRGYLTDKADVYSFGVVALEIVGGRSNTSFGTKADCLYLLDYANVLKERGNLLDLVDPRLGSEFNKTEAMTMITIALQCTNISAADRPSMSTVVGMLEGKIGVEELVSDPNISKQDVNAMWSHMYHQKVKTMGESEIQNMLTCESESETQSMLMDGPWTDSSITDSDCLPIMADARYLENRI 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30512746 30526720 - CcPI632755_11g017810.1 Cco11g1781 193017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1781 1013 Pfam Leucine Rich Repeat 178 197 IPR001611 GO:0005515(InterPro)
Cco11g1781 1013 Pfam Leucine Rich Repeat 107 126 IPR001611 GO:0005515(InterPro)
Cco11g1781 1013 Pfam Leucine Rich Repeat 202 223 IPR001611 GO:0005515(InterPro)
Cco11g1781 1013 Gene3D Ribonuclease Inhibitor 40 192 IPR032675 -
Cco11g1781 1013 Gene3D Ribonuclease Inhibitor 193 263 IPR032675 -
Cco11g1781 1013 Pfam Protein tyrosine and serine/threonine kinase 659 926 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1781 1013 Gene3D Phosphorylase Kinase; domain 1 621 732 - -
Cco11g1781 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase 733 940 - -
Cco11g1781 1013 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 626 732 - -
Cco11g1781 1013 SUPERFAMILY L domain-like 74 355 - -
Cco11g1781 1013 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 23 259 - -
Cco11g1781 1013 SUPERFAMILY Protein kinase-like (PK-like) 641 941 IPR011009 -
Cco11g1781 1013 Gene3D Transferase(Phosphotransferase) domain 1 733 940 - -
Cco11g1781 1013 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 8 943 IPR051824 -
Cco11g1781 1013 Gene3D - 398 585 - -
Cco11g1781 1013 Pfam Malectin domain 397 581 IPR021720 -
Cco11g1781 1013 SMART serkin_6 657 928 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1781 1013 Gene3D Ribonuclease Inhibitor 264 397 IPR032675 -
Cco11g1781 1013 ProSiteProfiles Protein kinase domain profile. 657 938 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1781 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1781 1013 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 395 586 - -
Cco11g1781 1013 CDD STKc_IRAK 663 930 - -
Cco11g1781 1013 Pfam Leucine rich repeat 273 332 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g1781 Cco-Chr11:30512746 Cco11g1783 Cco-Chr11:30552622 1.00E-210 dispersed
Cco11g1781 Cco-Chr11:30512746 Cco11g1782 Cco-Chr11:30528443 0.00E+00 tandem
Cco03g0714 Cco-Chr3:7342403 Cco11g1781 Cco-Chr11:30512746 1.30E-205 transposed
Cco09g2422 Cco-Chr9:38454164 Cco11g1781 Cco-Chr11:30512746 3.80E-197 transposed
Cco10g1945 Cco-Chr10:33008027 Cco11g1781 Cco-Chr11:30512746 9.30E-57 wgd
Cco11g0541 Cco-Chr11:5714802 Cco11g1781 Cco-Chr11:30512746 6.40E-67 wgd
Cco11g1781 Cco-Chr11:30512746 Cco07g1105 Cco-Chr7:24612574 5.40E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87262 PF07714 PK_Tyr_Ser-Thr 3.00E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1781 - - - 0.0