Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1782 ATGCTGTTGGCTCGATTACTCGCCGTCGTTTTTTTCTCATCTCTCTGCTTCGAAACCCTCACTTCCGGAGCCGCTCTGTTGCCGGCCGACGAAGTGGAAGCGTTGAAGGAGATCGGAAGGACATTGGGGAAGACGGGGTGGGATTTCACCGCCGATCCATGCGGCGGCGTTAGTAGCGGTTGGGTATCGAATTCCAAACAATTCGATAATAATTTTGCTAATAATGTCACGTGCGACTGCACGTTCCAAAATAATACCGTCTGTCACGTCACCATCATTGTTCTGAAGGCGCAGAGCCTTCAAGGTACTCTGCCTCCGCAACTAGTGAGGTTGCCTTTCCTGCAGGAACTTGATCTCACTCGCAACTATCTCAGCGGCCCGATTCCTCCAGAATGGGGTTCAACCAAGCTTCTCAAAATTTCCCTTCTAGGAAATCGATTGACGGGTCCAATCCCAAAAGAGATTGGAAACATCACCACTCTTACAGACTTGGTTTTGGAAATGAATCATTTTTCTGGAAGTATACCTCCAGAACTTGGAAATTTGACCAACTTATCAAGATTACTTCTTACCTCAAACAACTTTTCTGGGGAGCTCCCACCTTCCATGGCAAGGATAACCTCATTGACGGACTTTCGCATTGGTGATAATCACTTTACAGGGCCAATACCTAAGTTTATTCAGAATTGGACGAATCTTGCAAAAGTAGCTATTCAGGCAAGCGGGTTGAGTGGGCCAATTCCTTCTGAAATTGGACTTTTGACAAAATTAACTGATGTGAGAATCAGCGACTTGAATGGAGGTTCATCGCCCTTTCCACCCCTTAATTCTTTGACAAAATTGAAAACCCTGATATTGAGGAGTTGCAATATAACTGGGATGCTACCCGACAATCTTGGTGGTTTGACATCATTGAAAATCTTAGACTTCAGCTTCAACAAAATTACTGGACCAATACCTGATAGCTTTGAAGCATTAAAAAAAGTGGATAGCATATATCTAACTGGAAACTTGCTAAACGGATCAGTGCCAATTTGGATGCTAGATCAAGGAGAAAGCATTGATCTCTCTTATAACAAATTTACTCAGAGAAACTCTCAGAACACTGGTTGTCAATCACGAAATTTAAACCTATTTGCAAGCTCTTCACAGGGCAATAATTCTGGAGCAGTCTCATGTTTAGGCACTTGTCAAAAAACTTGGTACTCTGTCCATATAAACTGCGGAGGGAATGAAGAATTAATTAATGGAACAACCAAATTTGATGCTGACGCAAACACTGGAAGATCATCATTGTTTTTTCAAGGTGGAGCAAATTGGGGATTTAGTAATACTGGCAATTTTATGGACGATGATCGCTCACCAGACGATTTTATTGCATTAAACTCATCTACTCTCTCAATACCAAATCCTGAATTGTACATGAGGGCACGCATTTCTCCAATCTCTCTTACTTATTATGCATATTGCTTGGGTACTGGAAACTACACACTAAGCCTTCATTTTGCTGAGATAATGTTTACTAATGACAAAACATACAGTAGCCTTGGCAGACGCTTATTTGATGTTTACGTTCAGGGAAAGCTGGAGTTGAAGGATTTTAATATTGCAGATGCAGCAGGTGGTATTGGCAAACCTTTTGTAAAGAAATTCAAAGTTTCAGTGACTAATGGTACTATAGAGATCCGCCTATTTTGGGCTGGAAAGGGGTCAAATGCAATCCCTGTGAGAGGAGTTTATGGTCCTTTAATTTCCGCCATTTCTGTTGATCCTGACTTTACGCCACCATCAGAAGGTGGAAATGCCATATCTGCCGGTGCAGTGGTTGGAATTGTGGTTGCTGTGGTCTTTGTTATCATCTTGGTTCTTGGAGTGTTGTGGTGGAGGGGCTGCCTAAGAAAGACAAGCACACTTGAACAAGAGTTGAAGGGTCTAGATCTAGGAACAGGTTCATTTTCATTAAGACAAATCAGAGCTGCTACTAACAATTTTGATGCTGCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGTATTCTTGCAGATGGCACCGTAATTGCAGTGAAACAACTTTCTTCAAAATCAAAGCAAGGAAATCGTGAATTTGTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTTATGGATGTTGTATTGAAGGAAATCAACTTTTGCTAATATATGAGTATTTGGAAAACAATAGCCTTGCTCGGGCCTTATTCGGACCTGAAGAATGCCAACTGAAATTGGATTGGCCAACTAGGCAAAAGATTTGTGTTGGTATAGCTAGAGGTTTAGCATACCTTCACGAGGAGTCAAGACTTAAGATTGTTCACCGAGATATCAAAGCTACCAATGTTCTACTCGATAAAAATCTCAACCCCAAGATTTCCGACTTCGGTTTGGCAAAGCTGGATGAAGAAGAAAATACACATATCAGCACCCGGGTTGCTGGAACCTATGGGTATATGGCACCAGAATATGCCATGCGAGGCTACTTAACTGACAAGGCAGATGTGTACAGCTTTGGTATTGTGGGGTTGGAGATAGTCAGTGGTCGAAGCAACACAAGTTTCCGGACCAAGGATGATTGCTTTTACCTTCTTGACCATGCTAATACTTTAAAAGAGAAAGACCGTTTATTAGAGCTTGTCGATCCACGGTTAGGCTCTGATTTCAACAAGAGAGAGGCAATGACGATGATCAACATTGCTCTCCAATGTACAAACGTTGTTGCTGGTGACAGGCCTGCCATGTCATCAGTGGTGAGCATGCTGGAGGGGAAGGTTGTTGTGAAGGAGGTGGTTTCAGATCCCAGTGTCTCAAAACAAGATGTGAATGCAATGTGGAGCCAGATTTATCGCCAGAAAGGGGAAACAACGAGTGTAAGCCAGACGCAAAGTTTGACCATGGATGGACCATGGAGTGGTTCTTCAACAACTGCCAGTGATCTCTATCCCATCAACATGGATTCTAAGTACTTGGAGAATAGGAACTAG 3027 42.62 MLLARLLAVVFFSSLCFETLTSGAALLPADEVEALKEIGRTLGKTGWDFTADPCGGVSSGWVSNSKQFDNNFANNVTCDCTFQNNTVCHVTIIVLKAQSLQGTLPPQLVRLPFLQELDLTRNYLSGPIPPEWGSTKLLKISLLGNRLTGPIPKEIGNITTLTDLVLEMNHFSGSIPPELGNLTNLSRLLLTSNNFSGELPPSMARITSLTDFRIGDNHFTGPIPKFIQNWTNLAKVAIQASGLSGPIPSEIGLLTKLTDVRISDLNGGSSPFPPLNSLTKLKTLILRSCNITGMLPDNLGGLTSLKILDFSFNKITGPIPDSFEALKKVDSIYLTGNLLNGSVPIWMLDQGESIDLSYNKFTQRNSQNTGCQSRNLNLFASSSQGNNSGAVSCLGTCQKTWYSVHINCGGNEELINGTTKFDADANTGRSSLFFQGGANWGFSNTGNFMDDDRSPDDFIALNSSTLSIPNPELYMRARISPISLTYYAYCLGTGNYTLSLHFAEIMFTNDKTYSSLGRRLFDVYVQGKLELKDFNIADAAGGIGKPFVKKFKVSVTNGTIEIRLFWAGKGSNAIPVRGVYGPLISAISVDPDFTPPSEGGNAISAGAVVGIVVAVVFVIILVLGVLWWRGCLRKTSTLEQELKGLDLGTGSFSLRQIRAATNNFDAANKIGEGGFGPVYKGILADGTVIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLIYEYLENNSLARALFGPEECQLKLDWPTRQKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEENTHISTRVAGTYGYMAPEYAMRGYLTDKADVYSFGIVGLEIVSGRSNTSFRTKDDCFYLLDHANTLKEKDRLLELVDPRLGSDFNKREAMTMINIALQCTNVVAGDRPAMSSVVSMLEGKVVVKEVVSDPSVSKQDVNAMWSQIYRQKGETTSVSQTQSLTMDGPWSGSSTTASDLYPINMDSKYLENRN 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30528443 30540065 - CcPI632755_11g017820.1 Cco11g1782 193018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1782 1008 FunFam Putative LRR receptor-like serine/threonine-protein kinase 740 947 - -
Cco11g1782 1008 CDD STKc_IRAK 670 935 - -
Cco11g1782 1008 SUPERFAMILY L domain-like 82 362 - -
Cco11g1782 1008 Gene3D - 400 591 - -
Cco11g1782 1008 Gene3D Phosphorylase Kinase; domain 1 631 739 - -
Cco11g1782 1008 Pfam Protein tyrosine and serine/threonine kinase 667 934 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1782 1008 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 633 739 - -
Cco11g1782 1008 Gene3D Ribonuclease Inhibitor 268 379 IPR032675 -
Cco11g1782 1008 Pfam Leucine rich repeat 280 339 IPR001611 GO:0005515(InterPro)
Cco11g1782 1008 Pfam Malectin domain 403 587 IPR021720 -
Cco11g1782 1008 Gene3D Transferase(Phosphotransferase) domain 1 740 950 - -
Cco11g1782 1008 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 28 266 - -
Cco11g1782 1008 ProSiteProfiles Protein kinase domain profile. 664 915 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1782 1008 Gene3D Ribonuclease Inhibitor 28 267 IPR032675 -
Cco11g1782 1008 MobiDBLite consensus disorder prediction 970 991 - -
Cco11g1782 1008 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 951 IPR051824 -
Cco11g1782 1008 SUPERFAMILY Protein kinase-like (PK-like) 648 959 IPR011009 -
Cco11g1782 1008 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 401 592 - -
Cco11g1782 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1782 1008 Pfam Leucine Rich Repeat 114 133 IPR001611 GO:0005515(InterPro)
Cco11g1782 1008 Pfam Leucine Rich Repeat 161 182 IPR001611 GO:0005515(InterPro)
Cco11g1782 1008 SMART serkin_6 664 935 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0714 Cco-Chr3:7342403 Cco11g1782 Cco-Chr11:30528443 1.90E-212 dispersed
Cco09g2422 Cco-Chr9:38454164 Cco11g1782 Cco-Chr11:30528443 3.70E-200 dispersed
Cco09g2464 Cco-Chr9:38806239 Cco11g1782 Cco-Chr11:30528443 1.70E-142 dispersed
Cco11g1782 Cco-Chr11:30528443 Cco11g1784 Cco-Chr11:30564885 3.00E-202 dispersed
Cco11g1781 Cco-Chr11:30512746 Cco11g1782 Cco-Chr11:30528443 0.00E+00 tandem
Cco11g1782 Cco-Chr11:30528443 Cco11g1783 Cco-Chr11:30552622 4.00E-210 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87263 PF07714 PK_Tyr_Ser-Thr 8.30E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1782 - - - 0.0