Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1783 ATGGTCACAAATAGGGCTCGCCAACAGATTTCCTCACTCATAAATCCATCCATCATCTCCTCTGTCTCGTACTACTCTTATTTGTTTGATGCTCTGTTTCTCTGCCTTGGTTTGATGGTCGGAACTTGGGACATGGACTTGGCTGTTCTTGTTTATGGCTTCCTGCTTTTGAACTGCTTCTTGGAATTTGGATCCCATGCCCAACCTCTGCCTGATCAAGAAGTGAGAGCCCTTCAAGCAATATCTGCAGAGCTAAGGAACTTAAACTGGAATGTTCACCAAAATTCTTGCATTAATGGTGATGGATTTTTCAATAGACCAATCCTTGGTACAGATATTATCAGAGAGGTTAATTGCACTTGCACCACTGTTTGCAGTGTCACTACCATCCGGCTAAAGGGTTTGAATCTAACTGGAACTCTGCCAGCAGCATTTGGAAATCTAACAAAGCTGCAAACAATAGATCTTACTCGCAATTTAATTTCTGGATCGATCCCTAGAGAGTTGGCACAGATTCCTCTTGTTGATTTGTCCATGTTGGGAAATCGTCTCAGTGGCGAAATTCCTCCAGAAATTGGTGACATTGCTACACTTGAGCATTTGGTTTTGGAAGACAATCTCCTTGGAGGGAATCTTCCCGAAAGCCTCGGGCGACTGAGCCGCTTGCGAAGATTACTTCTTTCTGCAAATAATTTCAATGGAACAATTCCAGCATCGTATGGAAACTTGAAGAACTTGACTGATTTTCGGATAGATGGAAATGATGTAGCAGGAAGACTTCCTGAATTTATTGGCAATTGGACCAAACTAGAGAGACTGGATATTCAAGGAACTTCTATGGAGACCCCAATTCCTAGTGGCATATCTGACTTGAAAAACTTAACCCAATTGAGGATAACTGATTTGAAGGGACTGCCAACAAGTTTTCCTAATTTGACTCAATTGACATCTTTAGAAGAACTGATCCTAAGAAATTGCTTAATCCAGGATCAGATTCCTGGGTATATTGGATTGTTTAGTAATTTGAAAACTTTAGATCTAAGCTTCAATGAATTGAGTGGTCCAATTCCAAATACATTTCAGAATCTAGACAGAGTTACTCGGTTCATGTTTTTGACAAACAACTCATTAAGTGGCCAAGTTCCAAGCTGGATCTTGAACAGTGAAAGGAGCATAGATTTATCTTACAACAATTTTACCGGGTCCCCTGTTTCAAGTTGTCAACAGTCTGATGTGAACTTGGTTTCAAGTTATTCAACTACAATGAATAACACTGTTGCTTGGTGCTTGAGGAAGGATCTCCCTTGCCCAAGAGAAATGCGATTTCATTCCTTGTTCATAAATTGTGGAGGACAAAGGATGGAGGTTGATGGTAATGAATATGAAGAGGATGTAACTCCAGGTGGCAAATCCAATTTCATTTCTTTCTCTGATAGATGGGCTTATAGCAGTACTGGTGTTTTCCTGGGAGATGAGAATGCTAATTACAGAGAAACAAGTAGCAATGCATCTATTTCGAGCATCTACCGAACCGCTCGACTCGCACCTCTTTCGCTCAAGTACTATGGACTTTGTTTAAGAAGAGGAAGTTACAATGTGAAGCTTCACTTTGCTGAAATAATGTATACTTCTGACCAAACATTCAGCAGCTTGGGAGAGCGCATATTTGATATCTCAATTCAAGGAAATTTGGTTCAAAAAGATTTTAACATAATGGAGAAAGCTGGTGGTGTTGGGAAGAGCTTTATTCTAGAAGAGCCTAATATTTTGGTCAATGGAAGTACTCTTGAGATACACTTATATTGGGCTGGTAAAGGAACTACTGCCATTCCAGACAGAGGGGTGTATGGACCTTTGATATCTGGGATCACAGTCACACCAAACTTTGATGTGGAGACTGGAGGGCTATCAGCTGGAGCTATTGCTGGCATTGTTGTTGGTAGTTTTGTATTTGTTGTGTTGGTATTGGCTGTTCTTAGATGGAAAGGTTATTTGGGTGGAAAGGACACTGAAGACAGTGAACTGAAGGCCCTAGATTTACAGACAGGTTATTTCAGTTTGAGACAAATCAAAACAGCCACCAACAATTTCGACCCGACCTATAAAATAGGCGAGGGAGGTTTTGGTCCTGTCTACAAGGGTGTATTGTCCGATGGTACTTCGATCGCAGTAAAGCAACTATCCTCTAAATCAAGACAAGGAAACCGTGAATTCGTCACTGAGATCGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATTGAAGGAAACCAATTATTGCTTGTTTATGAGTATCTAGAAAATAACAGTCTTGCCCGTGCTCTTTTTGGCGCGGAGGAGCTCCGACTACACTTGGATTGGCCGATAAGAATGAAGATATGCTTGGGCATAGCAAAGGGATTGGCTTACCTTCATGAAGAATCTGTATTGAAAATTGTTCATAGAGATATAAAAGCTACCAATGTGTTACTTGATAAAAACCTGAATGCCAAGATTTCTGACTTTGGATTGGCTAGGCTTGATGAAGAAGAGAACACCCATATCAGCACAAGAATTGCTGGCACAATTGGTTACATGGCTCCTGAGTATGCAATGCGAGGCTACTTAACCGATAAAGCAGATGTTTATAGCTTCGGAGTTGTGGCTTTAGAGATTGTTAGTGGAAAAAGTAACACAAACTACAGGCCAAAAGAGGAATTTGTTTATCTTCTCGACTGGGCTTATGTTCTACAAGAGCAAGGAAACCTTCTCGAACTCGTTGATCCGAGTCTCGGCTCACATTACTCAAAAGAAGAGGTGATGAGGATGATTCATATAGCTCTGTTATGCACAAATCCATCTCCAACTCTTAGGCCATCTATGTCTTCAGTGGTTAGCATGCTTGAAGGAAAAATTTCGGTCCAAGCGCCGATCATAAAGCGTGGTGCAGTCGATCAAGATGCAAGGTTCAAAGCCTTTGAAAGACTGTCACAAGATAGCATAACAAGCATTTCAACATCATCACAAGGCATTCCAATGCAAAAAAGCATGTTGATTGATGGGCCCTGGATTGATTCCACTACTTCTTCTCATAACAAGGATGAAACTCAAGATTATTCTTCAACCACAAATCTCCTTTAG 3141 40.78 MVTNRARQQISSLINPSIISSVSYYSYLFDALFLCLGLMVGTWDMDLAVLVYGFLLLNCFLEFGSHAQPLPDQEVRALQAISAELRNLNWNVHQNSCINGDGFFNRPILGTDIIREVNCTCTTVCSVTTIRLKGLNLTGTLPAAFGNLTKLQTIDLTRNLISGSIPRELAQIPLVDLSMLGNRLSGEIPPEIGDIATLEHLVLEDNLLGGNLPESLGRLSRLRRLLLSANNFNGTIPASYGNLKNLTDFRIDGNDVAGRLPEFIGNWTKLERLDIQGTSMETPIPSGISDLKNLTQLRITDLKGLPTSFPNLTQLTSLEELILRNCLIQDQIPGYIGLFSNLKTLDLSFNELSGPIPNTFQNLDRVTRFMFLTNNSLSGQVPSWILNSERSIDLSYNNFTGSPVSSCQQSDVNLVSSYSTTMNNTVAWCLRKDLPCPREMRFHSLFINCGGQRMEVDGNEYEEDVTPGGKSNFISFSDRWAYSSTGVFLGDENANYRETSSNASISSIYRTARLAPLSLKYYGLCLRRGSYNVKLHFAEIMYTSDQTFSSLGERIFDISIQGNLVQKDFNIMEKAGGVGKSFILEEPNILVNGSTLEIHLYWAGKGTTAIPDRGVYGPLISGITVTPNFDVETGGLSAGAIAGIVVGSFVFVVLVLAVLRWKGYLGGKDTEDSELKALDLQTGYFSLRQIKTATNNFDPTYKIGEGGFGPVYKGVLSDGTSIAVKQLSSKSRQGNREFVTEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGAEELRLHLDWPIRMKICLGIAKGLAYLHEESVLKIVHRDIKATNVLLDKNLNAKISDFGLARLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSHYSKEEVMRMIHIALLCTNPSPTLRPSMSSVVSMLEGKISVQAPIIKRGAVDQDARFKAFERLSQDSITSISTSSQGIPMQKSMLIDGPWIDSTTSSHNKDETQDYSSTTNLL 1046
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30552622 30562179 + CcPI632755_11g017830.1 Cco11g1783 193019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1783 1046 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 666 772 - -
Cco11g1783 1046 MobiDBLite consensus disorder prediction 1022 1046 - -
Cco11g1783 1046 Pfam Malectin domain 445 623 IPR021720 -
Cco11g1783 1046 Gene3D Ribonuclease Inhibitor 74 197 IPR032675 -
Cco11g1783 1046 Pfam Leucine Rich Repeat 150 170 IPR001611 GO:0005515(InterPro)
Cco11g1783 1046 Pfam Leucine Rich Repeat 341 363 IPR001611 GO:0005515(InterPro)
Cco11g1783 1046 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 442 628 - -
Cco11g1783 1046 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 56 993 IPR051824 -
Cco11g1783 1046 CDD STKc_IRAK 703 970 - -
Cco11g1783 1046 ProSiteProfiles Protein kinase domain profile. 697 979 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1783 1046 Gene3D Phosphorylase Kinase; domain 1 666 772 - -
Cco11g1783 1046 Pfam Protein tyrosine and serine/threonine kinase 702 967 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1783 1046 Gene3D Transferase(Phosphotransferase) domain 1 773 983 - -
Cco11g1783 1046 Gene3D Ribonuclease Inhibitor 305 429 IPR032675 -
Cco11g1783 1046 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 236 303 - -
Cco11g1783 1046 SUPERFAMILY L domain-like 118 401 - -
Cco11g1783 1046 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1783 1046 SUPERFAMILY Protein kinase-like (PK-like) 681 974 IPR011009 -
Cco11g1783 1046 Gene3D Ribonuclease Inhibitor 200 304 IPR032675 -
Cco11g1783 1046 Gene3D - 443 628 - -
Cco11g1783 1046 SMART serkin_6 697 968 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1783 1046 FunFam Putative LRR receptor-like serine/threonine-protein kinase 773 980 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g2184 Cco-Chr10:34958252 Cco11g1783 Cco-Chr11:30552622 5.70E-93 dispersed
Cco11g1781 Cco-Chr11:30512746 Cco11g1783 Cco-Chr11:30552622 1.00E-210 dispersed
Cco11g1783 Cco-Chr11:30552622 Cco11g0264 Cco-Chr11:2575393 7.60E-71 dispersed
Cco11g1782 Cco-Chr11:30528443 Cco11g1783 Cco-Chr11:30552622 4.00E-210 tandem
Cco11g1783 Cco-Chr11:30552622 Cco11g1784 Cco-Chr11:30564885 0.00E+00 tandem
Cco06g1585 Cco-Chr6:26425038 Cco11g1783 Cco-Chr11:30552622 3.60E-85 transposed
Cco07g1080 Cco-Chr7:24321438 Cco11g1783 Cco-Chr11:30552622 0.00E+00 transposed
Cco09g2464 Cco-Chr9:38806239 Cco11g1783 Cco-Chr11:30552622 2.40E-149 transposed
Cco11g0066 Cco-Chr11:693510 Cco11g1783 Cco-Chr11:30552622 1.50E-86 transposed
Cco11g0067 Cco-Chr11:708474 Cco11g1783 Cco-Chr11:30552622 1.80E-41 transposed
Cco10g1936 Cco-Chr10:32933408 Cco11g1783 Cco-Chr11:30552622 4.40E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87264 PF07714 PK_Tyr_Ser-Thr 2.90E-49 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1783 - - - 0.0