Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1784 ATGGATTTTTCTATTTGGAGATTGAAGAGTGTTTGTGTATTGCTGCTTTTCAGCTGCTTCTTCCACTTTAGATCTCATGCCCAACCTTTACCTCAACAAGAAGTGAGAGCCCTTGAAGAAATATCTACAAAGTTAAAGAACTTAAATTGGAAAGTGCATCAAAATTCTTGCATTAACGGCGATGGCTTTTCCAATCTATTTATCAGTTCCACTCTTTTGAGAGAGGTCAATTGCACTTGTACCACTATTTGCCACGTCACCAGCATAAGGCTAAAAGGTCTTAATCTAGTTGGAGTTCTGCCCGTAGAATTTGCAAATCTGACTCAACTCCGGGATTTAGATCTCACTTACAATTTTATTTCTGGATCAATCCCAAGACAATTTGGTCGCATTCCTCTCCTTACTTTTTCCATAATTGAAAACCGACTCAGCGGTGAGATTCCGCCTGAAATTGGTGATATTGCTTCACTTGAGGAACTGATCTTGGAAGACAATCAGATTGGAGGAAATCTTTCTGAAAATCTCGGAAAACTAACCAGCTTACGTCGATTACTGGTTTCTTCAAATAATATTACAGGGTCGATTCCAGAATCTTTTCGAAACTTGAGGAACTTGACTGAATTTCGGGTGGATGGAACTAACATATCAGGAAAGATACCTCAATATATTGGCAACTGGACCAAACTTCTTAAATTGTATGTTCAAGGAACTTCAATGGAGAATCCTATTCCTCTTGCCATATCCGACTTGAAAAACTTAACCGAATTGGTCTTGAGAAATTGTTTAATCGAGGGTCGTATTCCTGAATATATTGGATCGTTTAATGAATTAAGAACTTTAGATCTAAGCTTCAACAGATTAAGTGGTCCAATTCCAGAAACATTTCAAAATCTATTCGTCCAAAAAACTGCCTTCATGTTTCTGAATAACAACTCCTTAAGCGGGCAAGTACCGAGTTGGATTATTGCCCAAAGTGGCAGCAGCAATAGAAACATAGATTTATCTTACAACAATTTCACAGGAATAAGCGATTTCAGTTGTACACAGTCCAATAATATTAACTTGGTTTCAAGTTCTACCGCAAAGAATAAAAGTGATGGTTGGTGCCAAATGAAGGATCTCCCTTGCTCTACAAAACCTCAATTTGATTCATTGTTCATTAATTGTGGAGGAGGAAGTATGGAATTTAATGGTAGTAGATATGAAGGGGATGATACTCAAGGTGGGAAAGCCAATTTCTTTTTCTCAACACAAAGATGGGGTTACACTACTACTGGTGTTTCATTGCTAAATGATCACCTTCCTTTCAAACTATCATCTACCAATTCCTCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCAACCCTCTATTCCACTGCTAGAGTTTCCCCTCTTTCTCTCAATTACTATGGCCTTTGCCTCATCAGTGGAAGCTACAATGTCAAGCTTCACTTTGCTGAAATTTTGTTTACTCCTGACCAAACTTATACCAGCCTCGGGAGACGTATTTTCGATATCTCCATTCAAGGAAAGTTGATTAAGAAGGATTTTAACATAGTGGAGGAAGGTGGAGGTGTTGGTAAAGAGTTTATTTTAGAAGTGCCCAATGTTATGGTCAATAATGGAAGTAGTACTCTTGAGATCTCCTTGTATTGGGCTGGTAAAGGAACAATTTACATTCCATACTTAGGGGTACATGGACCTCTGATATCTGCAATCACCGTCACACCAAACTTCAAAGTGGAAACTAATGTGAAAACTAGAGGGCTACCGGCTGGAGCTATTGCTGGCATTGTTGTTGGTATTTTCGTCTTTGTTGTTCTTCGATGGAAGGGTTATTTAGGCGGAAAGGAAACTGAAGACGATGAACTGCGAGACTTGAAATTACAAACAGGTTATTTCAGTTTAAGACAAATCAAAGCAGCCACCAACAGCTTTGACTCTGCTAATAAGATTGGGGAGGGAGGCTTTGGTCCTGTCTACAAGGGAGTACTATCAGATGGCACTTCAATTGCTGTAAAACAACTATCTTCTAAATCAAGACAAGGGAATCGTGAATTCATCACAGAAATTGGGATGATTTCTGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATTGAAGGAAACCAATTGTTGCTTATTTATGAGTATCTACAGAACAATAATCTTGCTCGAGCACTTTTTAGCCCTGAGAAACATTCCTTGCATTTGGATTGGCCAATAAGAATGAAGATATGTTTGGGAATAGCAAAAGGGTTGGCTTACCTTCATGAAGAATCAAGATTGAAAATTGTTCATAGAGATATAAAAGCTACTAATGTTCTACTTGATGGAAACTTGAATGCCAAGATCTCTGATTTTGGGTTGGCTAAGCTTGATGAAGAGGAGAATACTCATATTAGCACAAGAATTGCTGGCACAATTGGTTATATGGCTCCTGAATACGCAATGAGGGGTTATTTGACTGATAAGGCTGACGTTTATAGCTTTGGAGTGGTGGCATTAGAGATTGTTAGTGGTAAAAGTAATACGAATTACAGACCGAAAGAGGAATTTGTTTATCTTCTTGATTGGGCTTGTGTTCTACAAGAGGAAGGGAACTTACTTGAACTTGTTGATCCAAATCTTGGCTCACATTACTCAAAAGAGGAGGTCATGAGGATGCTTCATATAGCTCTCTTGTGCACAAACTTGTCTCCAAGTCTCAGACCATCCATGTCTTCTGTGGTTAGCATGCTTGAAGGTAAAATCGCAGTCGAAGTATCGAACATCAAGCGCAACACGACCGGTCGAGATGCAAGGTTCAAAGCATTTGATCACAAACTGTCACGAGATAGCCTAACAAGCATTTCGACCTCGTCGCAATTGCAAGGCATTGAGACGCAAAAAAGCATGTTAATGGATGGGTCATGGATTGACTCATCATCTACTTTTACTCAAGACAGAGACAATGCTCGAGAGCATTCTTCAACAAGAAGTCTCCTTACAGATTCATTCTAA 3030 38.88 MDFSIWRLKSVCVLLLFSCFFHFRSHAQPLPQQEVRALEEISTKLKNLNWKVHQNSCINGDGFSNLFISSTLLREVNCTCTTICHVTSIRLKGLNLVGVLPVEFANLTQLRDLDLTYNFISGSIPRQFGRIPLLTFSIIENRLSGEIPPEIGDIASLEELILEDNQIGGNLSENLGKLTSLRRLLVSSNNITGSIPESFRNLRNLTEFRVDGTNISGKIPQYIGNWTKLLKLYVQGTSMENPIPLAISDLKNLTELVLRNCLIEGRIPEYIGSFNELRTLDLSFNRLSGPIPETFQNLFVQKTAFMFLNNNSLSGQVPSWIIAQSGSSNRNIDLSYNNFTGISDFSCTQSNNINLVSSSTAKNKSDGWCQMKDLPCSTKPQFDSLFINCGGGSMEFNGSRYEGDDTQGGKANFFFSTQRWGYTTTGVSLLNDHLPFKLSSTNSSVSSSSSSSSSSSSSSPTLYSTARVSPLSLNYYGLCLISGSYNVKLHFAEILFTPDQTYTSLGRRIFDISIQGKLIKKDFNIVEEGGGVGKEFILEVPNVMVNNGSSTLEISLYWAGKGTIYIPYLGVHGPLISAITVTPNFKVETNVKTRGLPAGAIAGIVVGIFVFVVLRWKGYLGGKETEDDELRDLKLQTGYFSLRQIKAATNSFDSANKIGEGGFGPVYKGVLSDGTSIAVKQLSSKSRQGNREFITEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLQNNNLARALFSPEKHSLHLDWPIRMKICLGIAKGLAYLHEESRLKIVHRDIKATNVLLDGNLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWACVLQEEGNLLELVDPNLGSHYSKEEVMRMLHIALLCTNLSPSLRPSMSSVVSMLEGKIAVEVSNIKRNTTGRDARFKAFDHKLSRDSLTSISTSSQLQGIETQKSMLMDGSWIDSSSTFTQDRDNAREHSSTRSLLTDSF 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30564885 30576175 + CcPI632755_11g017840.1 Cco11g1784 193020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1784 1009 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 244 342 - -
Cco11g1784 1009 SUPERFAMILY L domain-like 64 341 - -
Cco11g1784 1009 CDD STKc_IRAK 658 925 - -
Cco11g1784 1009 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 382 584 - -
Cco11g1784 1009 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 621 727 - -
Cco11g1784 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 774 786 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1784 1009 MobiDBLite consensus disorder prediction 442 461 - -
Cco11g1784 1009 Gene3D Ribonuclease Inhibitor 242 360 IPR032675 -
Cco11g1784 1009 SUPERFAMILY Protein kinase-like (PK-like) 636 927 IPR011009 -
Cco11g1784 1009 Gene3D - 384 584 - -
Cco11g1784 1009 FunFam Putative LRR receptor-like serine/threonine-protein kinase 728 935 - -
Cco11g1784 1009 FunFam Leucine-rich repeat receptor protein kinase EMS1 100 196 - -
Cco11g1784 1009 Gene3D Transferase(Phosphotransferase) domain 1 728 946 - -
Cco11g1784 1009 ProSiteProfiles Protein kinase domain profile. 652 927 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1784 1009 Pfam Leucine Rich Repeat 252 273 IPR001611 GO:0005515(InterPro)
Cco11g1784 1009 Pfam Leucine Rich Repeat 180 202 IPR001611 GO:0005515(InterPro)
Cco11g1784 1009 Pfam Leucine Rich Repeat 109 130 IPR001611 GO:0005515(InterPro)
Cco11g1784 1009 Pfam Leucine Rich Repeat 277 298 IPR001611 GO:0005515(InterPro)
Cco11g1784 1009 Gene3D Phosphorylase Kinase; domain 1 621 727 - -
Cco11g1784 1009 Pfam Protein tyrosine and serine/threonine kinase 655 922 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1784 1009 Gene3D Ribonuclease Inhibitor 31 241 IPR032675 -
Cco11g1784 1009 SMART serkin_6 652 923 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1784 1009 Pfam Malectin domain 385 579 IPR021720 -
Cco11g1784 1009 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 947 IPR051824 -
Cco11g1784 1009 SMART LRR_typ_2 178 201 IPR003591 -
Cco11g1784 1009 SMART LRR_typ_2 107 130 IPR003591 -
Cco11g1784 1009 SMART LRR_typ_2 274 297 IPR003591 -
Cco11g1784 1009 MobiDBLite consensus disorder prediction 987 1009 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1080 Cco-Chr7:24321438 Cco11g1784 Cco-Chr11:30564885 5.20E-290 dispersed
Cco11g0066 Cco-Chr11:693510 Cco11g1784 Cco-Chr11:30564885 1.00E-85 dispersed
Cco11g1782 Cco-Chr11:30528443 Cco11g1784 Cco-Chr11:30564885 3.00E-202 dispersed
Cco11g1784 Cco-Chr11:30564885 Cco11g0264 Cco-Chr11:2575393 3.90E-72 dispersed
Cco11g1783 Cco-Chr11:30552622 Cco11g1784 Cco-Chr11:30564885 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87265 PF07714 PK_Tyr_Ser-Thr 2.90E-49 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1784 - - - 0.0