Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1819 ATGATAGGAATGGCAGAAGAAGAGCAAAAACAGAGGTGTTATAATAATAGATTTGGGAGTTCTGGGACAATTGGTGGTATTAGTGGTAGATCTTCTTCTAAGAAACTAAAACCAAAGCCTAAGAAAGTTCCACAAAGAGGACTTGGTGTTGCACAGCTTGAGAAGATCAGATTAGAGGAACAGCAGAAGAACGATGCAGCTGCTGCAATTTTCTCATCCTCTTCTCCATTGTCACCAACCAAATCCTCCTCTTATTTGTCTTTACCGGTTCCTAGTTTTCGCCAATCAAACCAGTCTTCGTCTTCGTCGTCGTTCCCTTCGCCACCTCCAGTGAATCTCTCCTCTTCCTCCTCAATGTTTGGGCCACCTCTGCCTGTTCTAAACATGTCTGTTAAAGATTCTTTCACTGTTCCATTGGTGGATCAAGCAAATAGTGGTGGATCTGAAACCGGGTGGTCTGCTATTACAATTATGGAGCAAGGAAATGCTCACAAATGGAAGAGTTCTTCTTGTGAATACTATCTTGAGAAGGAGAATTACGGGGTTGATCCCAGTCTGGCATTTCGTTCGAGTTTCGATTTCCCTTATGAAGTTAACCCTGGCTGGCCTTCCCCAGAACTCCTGCAAAGAGCACACCATAATCAAGTACCTTCTCAGATGGTGAATCTGTCATCAACAACTTCACTGTCTTCTGGTCTAAATGTCCAGATAGAGCCCCCTTCAAACCAAAGCTATTGTTATGGCAACTACTCAACCATCTGGGCAGACAAGGAAGAGAAGATGTTTGGCATGAAGAGATTTCCCCTCTTTTCTCCACACAATCCAACTGAACCGAAGTTCAATTACAACCACTCTTCCTTCACTGTTCCAAATAGATCCGATGATTCAACTTCGAATGGTAATGGAAGCACACAGAGTTTTCGAGAGGATCATGCACGAAGCTTAACGTGCATATCTGCACCGAGTTCCTTGGAAAACATCAAAGAAGATGACTTTAGTGGAAACTTCCTTACTCTTGCTTCTCTTTCTACTGGTTTGACATCAAGTCCAAGCTCTAAGAATATCAAACGTCCTCCAACTCATCCTCTTCTGCAGAATCTTATGCATTCCGATTTGGAACTGCTTCCTTTTCAGGGTGGCTTGAAACCTGTTGGATTGGCCGAAAAGCAGCCTTTCTATAGCTTCCTCCCACCTGCAGAGGCAAAATCTGGGAAAGAAACTGCCATTTCTATGAACAAGTGCAATGGGGAAGTAGGAGAAAGACTTGATCTAGATTTGAAGTTGTAG 1287 43.28 MIGMAEEEQKQRCYNNRFGSSGTIGGISGRSSSKKLKPKPKKVPQRGLGVAQLEKIRLEEQQKNDAAAAIFSSSSPLSPTKSSSYLSLPVPSFRQSNQSSSSSSFPSPPPVNLSSSSSMFGPPLPVLNMSVKDSFTVPLVDQANSGGSETGWSAITIMEQGNAHKWKSSSCEYYLEKENYGVDPSLAFRSSFDFPYEVNPGWPSPELLQRAHHNQVPSQMVNLSSTTSLSSGLNVQIEPPSNQSYCYGNYSTIWADKEEKMFGMKRFPLFSPHNPTEPKFNYNHSSFTVPNRSDDSTSNGNGSTQSFREDHARSLTCISAPSSLENIKEDDFSGNFLTLASLSTGLTSSPSSKNIKRPPTHPLLQNLMHSDLELLPFQGGLKPVGLAEKQPFYSFLPPAEAKSGKETAISMNKCNGEVGERLDLDLKL 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30867335 30869113 + CcPI632755_11g018190.1 Cco11g1819 193055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1819 428 MobiDBLite consensus disorder prediction 281 310 - -
Cco11g1819 428 MobiDBLite consensus disorder prediction 14 30 - -
Cco11g1819 428 PANTHER OS01G0212500 PROTEIN 19 428 IPR040356 GO:0003700(InterPro)
Cco11g1819 428 MobiDBLite consensus disorder prediction 1 49 - -
Cco11g1819 428 MobiDBLite consensus disorder prediction 89 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1819 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g1819 Cco-Chr11:30867335 Cco07g1067 Cco-Chr7:24205512 1.50E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g141 . . . . . . Bma10g00485 . . Cmo04g00601 Cma01g01236 . Car01g01057 . . . Cpe02g00680 Bhi09g03491 . . . . . . Cla11g01723 Cam11g1792 Cec11g1813 Cco11g1819 Clacu11g1951 Cmu11g1761 Cre11g2170 . . Cone14ag1039 Cone15ag1025 Lsi04g02030 Csa04g02302 Chy07g00037 Cme07g00548 . . . Bda12g00824 . Bpe03g00848 . . . Cmo01g01289 . Cma04g00563 . Car04g00534 . . Cpe01g00508 . . . . . . . Cla07g00943 Cam07g1019 Cec07g1089 Cco07g1067 Clacu07g0988 Cmu07g0984 Cre07g1358 . . Chy07g00957 Cme07g01327
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009454 2 4 1 0 0 0 2 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 1 0 31