Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1823 ATGCTACAAGGAGTTGTTGGAGTCAAGAGCTACTTCCCAGAAAGAAATCCTCCATATCATGAATTTTATCATCGGTTTTCTCAAAGGTTTAGATTAGAGTATTTTGATGAGGACAACAACGAGCCTGGTATTTTTGCAGTACAGGCTTATGATGCTGCAATGACAGCGGCTATGGCTATGAGTGAAATCCAAGAAAAGGGTAATCACTTGTTAGAAAAAATAAAGCTCACTCACTTTCAAGGACTCAGTGGAAAGATTCAGTTTAAGGACAGAAAATTAGCCCCAGCTGATACTTTCCAGATTATCAATGTGGTGGGGAGAAGTTATAGGGAACATAGCTTCTGGTCTGATAAATCAGGCTTCTCAAGAGAGCTGAGGGAAAATTCATCTTCTAGCTTGTCGATGAAGAATCTTGGTGAAATGTTTTGGCCAGGTGGATCTTCAAAACACCAAGGGGATGGGTCATACCAATGGATGCCAATCATTGAGAATTGGGGTGCCAACTACCTTCCGTTTGCTCTACCACGTGTCTTCTGTCCTTTCAATGGAACTTATGATGAATTAGTGCAAGGAATCTACTTGAAGAAATATGATGGAGCAATAGGTGACGTAGCAATAACAACAAAACGCTTAGACCATGCAGAATTTACACATCCTTACTCTGAAGCAGGATTGGTGATGATAGTTCCTACCAGAAAAGACACAAGGAACAAAGCATTGTTGTTCACAAAGCCCTTTACTGTGACCATGTGGATTCTAATTGCTGTGCTGGAGCTATGCTTTGCTCATCCTTCACCACTCTCTTCTCCTTACGGTAATAGGTTGCATAGTAACTTATCGCGGATGGCTATGGTGGCTTGGCTATTTATGGCACTTGTGATAACTCAGACATACACAGCTAATCTTGCTAGCATGCTCACTATTCAAAAGTTTGAAGTGACGATATCGAATATTGACACTCTCCATAGAAAAAATGCATCTGTGGGAAACGGAAGAGGAACCTTTGTCCAAAGATATTTGGAAGAAGTTTTAGAATTTCCAGCTGAAAATATAAAAGGCTACAGTACCCCGAACGATCTAGTCAACGCTCTCAGAAACCAGGAGATAGCAGCTGCATTTCTTGAAGTCCCTTTTGCAAAATTATTCCTTGCAAGATTTTGCAAGGAATTCGTGATTTCTGGACCAACCTACCTTGTTGGAGGATTTGGATTTGCATTTCCGACTGGCTCTCCGCTGTTACGAGATTTTAACAAAGCACTGCTTAAGGTATCTGAAACTGGGAAGTATAGAAAGTTGGAGGAAAGCATGATTGCTAGTGAGAAATTTTCTGGAGAGCATGAAACTGAAGGAAACACAAACTCGACGATGAATGATAGTGGAAAGGGCAGAATAGGGTTCATTGTAGACAAGAGTTCCAGGATTGGCAAGGAAGAGATTTTAGCTATGCAGATGGCTATAGAGGATTTTAACTCCTTCAGCAATCAAAGTTTTAGTCTGGTCATCAGAGACTACAAAAGTGATCCAAATCTTGCAGCTCTTGAAGCTAATGATCTCATCAGTATGCAACAAGTTCAGGTTCTTATAGGACCACAAACTTGGGAAGCTGCATCCATAGTTGCTGAGGTTGGAAATGAGAAACAGGTTCCAGTTCTAACGTTAGCTAATGAAATACCAAAATGGGCGACCGAGAGGTTCAAATTTTTGGTTCAAGCTTCTCCCTCCCAACTACATCAAATGAGGGCTATAGCTGGTATTATCAGTTCGTGGGATTGGCACCTTGTCAATGTAATATATGAAGATAGAGATTTCTCAACCACCGGAATATTTCCTCATCTTGTACATGCCCTCAAAGACGTAGGAGCTGAAGTAAGTGAATTTGTTGGTCTCTCTCAATTTGATTTTGATTTTTTTTCCAAAGAATTGGAGAGGCTAAGAAGAGGGTCAAGCAGAATATTTGTAGTTCATATGTCTTTCAAGTTGTCACTGTGTCTATTTGAGATAGCAAAAGAGATGGGAATGATGAAAAACGACTATGTTTGGATCACTACTGATTCTTTCGCAAACCTTGCACATTCTTTCAACGCTTCTATCAACTCTCTACTACAAGGAGTTGTTGGAGTCAAGAGCTTCTTCCCTGAAGACAATCCTCAATTTCATGAATTTTATCTTCGGTTTTGTCAAAGGTTTAGATTAGAGCATTCTGACGAGGACAATCACGAGCCTGGTATTTTTGCGATACAGGCTTATGATGCTGCAAGGACAGCAGCTATGGCAATGAGTGAAATCCAAGAAAAGGGGAATCACTTGTTGGAAAAAATAAAGCTCACTGATTTTCAAGGACTCAGTGGAAAGATTCAGTTTAAGGACAGAAAACTAGCCCTATCTGATACTTTTCGGATCATTAATGTGATGGGGAGGAGTTATAGGGATTTAGGCTTCTGGTCGGATAAGTTAGGCTTCTCACGAGAGTTGAGGGAAAATTCGTCTTCTAGCTCGTCGATGAAGGATCTTGGCGAAGTGTTTTGGCCCGGTGAATCTTCGATAACTCCAAGGGGATGGGTTGTACCAACAGATGCCAATTCATTGAGAATTGGGGTGCCTACTAGTTCCATGTTCAGACAGTATGTACATGTGGAAGAAGATCCTTTGGGAAATAATTTATCCTTCAATGGACTTGCAATTGATCTGTTTAAAGCAACCTTAGACAACCTTAACTTCCCTCTGTCCTACCACTTTTTTCGTTTCGATGGACCATATGATGATTTGGTGAAGCAAATCTACCTGAAGAACTTCGATGCAGCCGTAGGTGATATAGCAATATTATCACGGCGCTATGAACATGCGGAGTTTACGCATCCTTACTCAGAAGCAGGACTGGTGATGGTAGTTCCTACCATAAAAGATTCAAGTAATAGAGCATTGATGTTCACAAAGCCCTTTACTGTGACCATGTGGTTTGCAATTGCTGTGATAAATGTCTACAATGGCTTTGTAGTCTGGTTCATAGAACGCAATCGCTATCCCGGTCATGAAGGTTCGATGTTTAATCAAGCCGGAACCATGCTTTGCTCATCCTTCACCACTCTCTTCTCCTTACATGGTAATATGCTGCACAGTAACTTGTCTAGGATGACCATGGTGGTTTGGCTATTTATGGCACTTGTGATAACTCAAATATATACTGCTAATCTTACAAGCATGCTCACTATTCAAAAGCTCGAACCGACGATAACGAATATCGAAACTCTCCAAAGGGCAAATGCGTTAGTCGGATTTGGCAGAGGATCATTTGTCAAAAGATATTTGGAAGAAGTCTTACACTTTCGTGCCGAAAACATAAGAAACTACTCTACACCTGATGATTATGCCGAAGCTCTCAGAAAGCGAGAGATAGCAGCTGCTTTTCTTGAAGTCCCTTTTGTAAAAATATTCCTTGCAAGATTTTGTAGGGAATTCATGGTATCTGGACCAACATACAAAGTTGGAGGATTTGGATTTGCATTTCCGAGAGGCTCTCCGCTGTTAACGGATATTAACGAAGCATTGCTCAAGGTATCTGAAACTGGGAAGTTCAGAGATTTGGAAGATAGCATGATTGCTAATGAGAAATGTGAGGATGGGGATGCAAAGGATGAAAATTCAAGCCTCAGCCCCAACAGCTTCTTCATATTATTTGTATTGAGTGGAGGAGTATCAACCATAGCTCTTACATTATACATCTTTAATGCTCATAACTTCAGTTTTCAACAGAATACCATTTGGAGATTAATGATAGCTGTAATGAGACACTGGGGAAAGCACAGGAGGCAATTTTCTCGACGAGTAAGTGATGAACTGCAAATGACTGTCTCAAATAACTTCTCGAACGCCACGAACTTGCAAATTCAGGTCTAG 3894 40.78 MLQGVVGVKSYFPERNPPYHEFYHRFSQRFRLEYFDEDNNEPGIFAVQAYDAAMTAAMAMSEIQEKGNHLLEKIKLTHFQGLSGKIQFKDRKLAPADTFQIINVVGRSYREHSFWSDKSGFSRELRENSSSSLSMKNLGEMFWPGGSSKHQGDGSYQWMPIIENWGANYLPFALPRVFCPFNGTYDELVQGIYLKKYDGAIGDVAITTKRLDHAEFTHPYSEAGLVMIVPTRKDTRNKALLFTKPFTVTMWILIAVLELCFAHPSPLSSPYGNRLHSNLSRMAMVAWLFMALVITQTYTANLASMLTIQKFEVTISNIDTLHRKNASVGNGRGTFVQRYLEEVLEFPAENIKGYSTPNDLVNALRNQEIAAAFLEVPFAKLFLARFCKEFVISGPTYLVGGFGFAFPTGSPLLRDFNKALLKVSETGKYRKLEESMIASEKFSGEHETEGNTNSTMNDSGKGRIGFIVDKSSRIGKEEILAMQMAIEDFNSFSNQSFSLVIRDYKSDPNLAALEANDLISMQQVQVLIGPQTWEAASIVAEVGNEKQVPVLTLANEIPKWATERFKFLVQASPSQLHQMRAIAGIISSWDWHLVNVIYEDRDFSTTGIFPHLVHALKDVGAEVSEFVGLSQFDFDFFSKELERLRRGSSRIFVVHMSFKLSLCLFEIAKEMGMMKNDYVWITTDSFANLAHSFNASINSLLQGVVGVKSFFPEDNPQFHEFYLRFCQRFRLEHSDEDNHEPGIFAIQAYDAARTAAMAMSEIQEKGNHLLEKIKLTDFQGLSGKIQFKDRKLALSDTFRIINVMGRSYRDLGFWSDKLGFSRELRENSSSSSSMKDLGEVFWPGESSITPRGWVVPTDANSLRIGVPTSSMFRQYVHVEEDPLGNNLSFNGLAIDLFKATLDNLNFPLSYHFFRFDGPYDDLVKQIYLKNFDAAVGDIAILSRRYEHAEFTHPYSEAGLVMVVPTIKDSSNRALMFTKPFTVTMWFAIAVINVYNGFVVWFIERNRYPGHEGSMFNQAGTMLCSSFTTLFSLHGNMLHSNLSRMTMVVWLFMALVITQIYTANLTSMLTIQKLEPTITNIETLQRANALVGFGRGSFVKRYLEEVLHFRAENIRNYSTPDDYAEALRKREIAAAFLEVPFVKIFLARFCREFMVSGPTYKVGGFGFAFPRGSPLLTDINEALLKVSETGKFRDLEDSMIANEKCEDGDAKDENSSLSPNSFFILFVLSGGVSTIALTLYIFNAHNFSFQQNTIWRLMIAVMRHWGKHRRQFSRRVSDELQMTVSNNFSNATNLQIQV 1297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30901462 30911124 + CcPI632755_11g018230.1 Cco11g1823 193059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1823 1297 Gene3D - 461 579 - -
Cco11g1823 1297 SMART GluR_14 863 1201 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cco11g1823 1297 Gene3D - 154 259 - -
Cco11g1823 1297 Gene3D - 1149 1206 - -
Cco11g1823 1297 Pfam Receptor family ligand binding region 2 106 IPR001828 -
Cco11g1823 1297 Pfam Receptor family ligand binding region 480 803 IPR001828 -
Cco11g1823 1297 Pfam Bacterial extracellular solute-binding proteins, family 3 887 981 IPR001638 -
Cco11g1823 1297 Gene3D - 297 433 - -
Cco11g1823 1297 CDD GluR_Plant 168 437 - -
Cco11g1823 1297 Gene3D - 301 400 - -
Cco11g1823 1297 Gene3D - 11 93 - -
Cco11g1823 1297 CDD PBP1_GABAb_receptor_plant 463 824 IPR044440 -
Cco11g1823 1297 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 464 1248 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cco11g1823 1297 SUPERFAMILY Periplasmic binding protein-like II 168 434 - -
Cco11g1823 1297 FunFam Glutamate receptor 973 1111 - -
Cco11g1823 1297 SUPERFAMILY Periplasmic binding protein-like I 463 854 IPR028082 -
Cco11g1823 1297 FunFam Glutamate receptor 857 972 - -
Cco11g1823 1297 Gene3D - 863 973 - -
Cco11g1823 1297 Pfam Ligand-gated ion channel 1197 1229 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cco11g1823 1297 Pfam Bacterial extracellular solute-binding proteins, family 3 184 434 IPR001638 -
Cco11g1823 1297 SUPERFAMILY Periplasmic binding protein-like II 840 1196 - -
Cco11g1823 1297 Gene3D - 755 862 - -
Cco11g1823 1297 Gene3D - 580 739 - -
Cco11g1823 1297 FunFam Glutamate receptor 578 739 - -
Cco11g1823 1297 CDD GluR_Plant 862 1199 - -
Cco11g1823 1297 Gene3D - 974 1115 - -
Cco11g1823 1297 SUPERFAMILY Periplasmic binding protein-like I 3 116 IPR028082 -
Cco11g1823 1297 Pfam Ligand-gated ion channel 273 400 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1823 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1569 Cco-Chr8:27290429 Cco11g1823 Cco-Chr11:30901462 1.50E-39 dispersed
Cco08g1781 Cco-Chr8:28925225 Cco11g1823 Cco-Chr11:30901462 3.20E-165 dispersed
Cco08g1782 Cco-Chr8:28950917 Cco11g1823 Cco-Chr11:30901462 1.00E-46 dispersed
Cco11g1821 Cco-Chr11:30889918 Cco11g1823 Cco-Chr11:30901462 0.00E+00 dispersed
Cco11g1823 Cco-Chr11:30901462 Cco11g1939 Cco-Chr11:32016696 2.20E-104 dispersed
Cco11g1822 Cco-Chr11:30900490 Cco11g1823 Cco-Chr11:30901462 1.90E-59 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g146 Blo03g00681 . . . . . . . . . . . . . . . . Bhi09g03482 Tan01g4350 . . Hepe01g1420 Mch11g1030 . Cla11g01726 Cam11g1796 Cec11g1817 Cco11g1823 Clacu11g1955 Cmu11g1765 Cre11g2173 . . . . Lsi04g02034 Csa04g02306 Chy07g00042 Cme07g00554 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68