Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1824 ATGCCCAATTTAACTCCTTCTCCTCCTCCTCCTCCGCCGCCCTCCGCCACCCACCACCACAACTCTTCTTGGGTCGATGATTTTCTTGACTTCTCCACCGCCCGCCGCGGCCTTCACCGGAGATCCATTAGCGACTCCATTGCTTTCCTTGAAACCCCATTTTCCGATCAATGCCGTAACTCCGCCCTTCTTCATCCTCCTCCTCCTTTTGACCGCCTTGACGACGACCAACTTATGTCCATGTTTACCGATGACATTTCCATCCCCATTCCTGCTTCCGCCTCCAATCCTTCCACTCCTTCCGACCAAAATAGTAACAACGACGAGAAAAACCCAACCGAGGACGCCATGTTTCCGCCTCCACCGCCACCACCTCTGCCTCCGCATCAGTTGAAAAATGAACCTGGCGAGGTTGAAATTAGCTCCTCTTGCCAACTGCAGCAGCAATCTCAACCACCGCCGCCTTCCTCTGCCGCTGATAATACCATTGATCCCAAAAGAGTTAAGAGAATTTTGGCAAATCGACAATCAGCACAAAGGTCGAGAGTCAGAAAATTGCAATATATTTCTGAGCTCGAGAGAAGTGTAACCACATTACAGACTGAAGTATCAGCATTGTCTCCTAGAGTGGCATTTTTAGACCACCAAAGATTGATTCTAAATGTCGATAATAGTGCTCTCAAGCAGAGAATTGCAGCTTTGGCTCAAGATAAGATTTTCAAAGATGCTCATCAAGAGGCGTTAAAGAAGGAAATAGAGAGATTGAGGCAAGTTTACCACCAACAAAGTTTGAAGAAAATGAGCGGTAATCAAAATGGAGCGGCGCAACCGCAAGCACCGTCGTCCGGAGAAGGTACTCCGCCGCAAGCGGCTGAGATGGAGAAGGAGCAAGCTGTAAGTTGA 903 48.84 MPNLTPSPPPPPPPSATHHHNSSWVDDFLDFSTARRGLHRRSISDSIAFLETPFSDQCRNSALLHPPPPFDRLDDDQLMSMFTDDISIPIPASASNPSTPSDQNSNNDEKNPTEDAMFPPPPPPPLPPHQLKNEPGEVEISSSCQLQQQSQPPPPSSAADNTIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQSLKKMSGNQNGAAQPQAPSSGEGTPPQAAEMEKEQAVS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30912410 30914653 - CcPI632755_11g018240.1 Cco11g1824 193060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1824 300 MobiDBLite consensus disorder prediction 261 285 - -
Cco11g1824 300 CDD bZIP_plant_RF2 167 217 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1824 300 MobiDBLite consensus disorder prediction 136 157 - -
Cco11g1824 300 PANTHER BASIC LEUCINE ZIPPER 34 11 291 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
Cco11g1824 300 MobiDBLite consensus disorder prediction 89 112 - -
Cco11g1824 300 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 169 184 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1824 300 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 164 216 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1824 300 Pfam bZIP transcription factor 166 210 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1824 300 Gene3D - 165 238 - -
Cco11g1824 300 Coils Coil 245 265 - -
Cco11g1824 300 MobiDBLite consensus disorder prediction 1 17 - -
Cco11g1824 300 FunFam Basic leucine zipper 61 165 238 - -
Cco11g1824 300 SMART brlzneu 162 226 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1824 300 MobiDBLite consensus disorder prediction 1 22 - -
Cco11g1824 300 MobiDBLite consensus disorder prediction 58 164 - -
Cco11g1824 300 MobiDBLite consensus disorder prediction 259 300 - -
Cco11g1824 300 SUPERFAMILY Leucine zipper domain 166 220 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1824 300 MobiDBLite consensus disorder prediction 115 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1824 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0997 Cco-Chr2:12467048 Cco11g1824 Cco-Chr11:30912410 1.10E-24 dispersed
Cco03g0053 Cco-Chr3:511936 Cco11g1824 Cco-Chr11:30912410 6.00E-08 dispersed
Cco09g0965 Cco-Chr9:9108695 Cco11g1824 Cco-Chr11:30912410 3.60E-09 dispersed
Cco11g1394 Cco-Chr11:26738620 Cco11g1824 Cco-Chr11:30912410 1.40E-09 dispersed
Cco11g1824 Cco-Chr11:30912410 Cco02g0233 Cco-Chr2:2211156 3.60E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g147 . . . . . . . . . . Cma01g01233 Cma09g00832 Car01g01054 Car09g00746 Sed05g2538 Cpe06g00663 Cpe02g00683 Bhi09g03480 Tan01g4352 Cmetu04g0980 . Hepe01g1419 Mch11g1032 . Cla11g01727 Cam11g1797 Cec11g1818 Cco11g1824 Clacu11g1956 Cmu11g1766 Cre11g2174 Cone6ag0180 Cone9ag0205 Cone14ag1040 Cone15ag1029 Lsi04g02035 Csa04g02307 Chy07g00043 Cme07g00555 . . . . . . . . . Cmo01g01286 Cmo09g00825 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000658 3 3 2 3 3 1 5 3 2 3 2 2 4 3 3 5 2 5 5 3 3 3 3 3 3 3 3 9 3 3 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60310 PF00170 bZIP_1 7.10E-10 CL0018 Cco TF