Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1827 ATGTTTTGCTTGGCAATTGAATTTGAGGAAGAGCTGAGGAGCTGTCCACGTAGCAAATTCGACCGCTCCAAAGTCCGTCGTCTTCCCCGGCTCCGGTCGACCGTCGGAGTGTACACTGAACATTATCCACTCACTTCCGTTCATTTCAGTTCAATGTTTCTGAGAGCTCCGCTGCTTAAGCTTTCATCATTCTACTCAATCCCATGTCATCCTCTGGTTCCGTTGTCTCTCTCTTCCTCAATTTGTTCTTCTTCTCGCACACCTTTCGCCATTCGATGCCATTCATCTCTCCCCACAGCCCACGAACCATCTTCTTCAGCTCCCTCTGAATATCCCGATGTGGCGGATAATCGTTGGCGGCCCACGTGTTTGTATTTCACACAGGGCAAGTGCACAATGATGGATGATCCACTCCACATAAAGAAGTTCAATCATGATATCTCCAGGGAGCTTCAGGTAGAAATTGCTAGGTCAAACCATATGCGAACTCAGGACATTGATTTTTTTCTGGTGCTTGATTTGGAGGGTAAAGTTGAAATTATTGAGTTTCCAGTCATATTAGTCAATGCCAAGACAATGGGTGTGACAGGTTTTTTCCACAGGTTTGTTAGGCCATCAAGAATGAGTGAACAAAGGATAAATGAATACATTGAAGGAAAATACGGCAAGTTTGGAGTTGACCGTGTCTGGCATGACACAGCCATACTGTACAAGGATGTTATTCAACAGTTCGAAGATTGGCTGGTTCATCATCAGCTATGGAGGAAGGAACTGGGTGGTGTTCTTGATCGAGCAGCATTTGTGACATGTGGCAACTGGGATATAAAAACTCAGGTCCCACATCAATGTAGCGTGTCGAAGATGAAACTTCCTGACTATTTTATGGAGTGGATCAACATTAAAGATGTCTATCTCAACTTTTACCAAAAGAAGGCAACGGGAATGGTGACGATGATGAGACAACTCGAAATACCCTTGGTGGGAAGCCATCATCTTGGTATAGATGATACAAAGAACATCGTGAGAGTGTTGCAGAGAATGGTTGCTGATGGTGCACATTTGCAGATCACTGCACGTAGGAATCCCAAATCTCAACATGTTAAGTTTCTTTTTGAGAACCTTTGTGACAAATGGAAGTTGAATACAAATGCTTCTTGGTGCCCCTCTTGCCAAGTTGAAGGGCTGGGATGGGTGATATGTGACCATCTTGGATGTGTTCTTCAAGCAGGGCCACCGGGCGAAGACGGCGGAAGTGGACGGCTATTAGTAAAGCTGAAACCCCATGGTTCAAACCATTCAAGGTCCTCTACTGTTCCGAAATCCGAAGCTTCATCAAAAACCCTTTTAGGGAAACGCAAGGAAAGATCTGATGTGGAGTCAAATCATTCCCAGAAGAATATTCTCATTCCGGTGAATGATGATTTTAGTGTTACAGATGAAGTAGCCATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGGAATGTTATATACGATGAGTTTGTACGCCCTATAGAGCGCGTGGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGACTTGAAGAAAGCTAAGGATTTTCCAACTGTCCAGAAGAGAGTGGCAGAGTTGATTAAAGGAAAGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGACACCTCCGAGTACCAATTCTTTCAGAAGGAAGGAAGTAAAAGAGCTCTCCGCCATCTTGCAGCCGAGTTTCTTGGCGTTGAGATCCAAAACGGGGAGCACTGTCCTGTAGAAGATGCTCGTTCTGCAATGCTGCTGTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTCAAAGCTGAAATAAAGCTTAAATTGAAGCAAAAGAAACGCAGGCCAAGGAAGAAATCCAAGGATGGAAGTGTGCACCTTCAAGTTCTCAACAACACACACTCTCTCGCCGATCATACCCCATTTACTGGCTTGAAAAGCGTTCTGCCAATGTGCAATTTTCCCATGATGATTCATGTTCCTTGGCATGTGTAG 2109 44.62 MFCLAIEFEEELRSCPRSKFDRSKVRRLPRLRSTVGVYTEHYPLTSVHFSSMFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSAPSEYPDVADNRWRPTCLYFTQGKCTMMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHLQITARRNPKSQHVKFLFENLCDKWKLNTNASWCPSCQVEGLGWVICDHLGCVLQAGPPGEDGGSGRLLVKLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSVHLQVLNNTHSLADHTPFTGLKSVLPMCNFPMMIHVPWHV 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30931233 30943358 - CcPI632755_11g018270.1 Cco11g1827 193063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1827 702 Gene3D - 477 655 IPR036397 GO:0003676(InterPro)
Cco11g1827 702 MobiDBLite consensus disorder prediction 417 463 - -
Cco11g1827 702 Gene3D - 156 380 IPR036397 GO:0003676(InterPro)
Cco11g1827 702 MobiDBLite consensus disorder prediction 446 461 - -
Cco11g1827 702 Pfam Exonuclease 481 627 IPR013520 -
Cco11g1827 702 Pfam Exonuclease 172 344 IPR013520 -
Cco11g1827 702 CDD REX4_like 481 629 IPR037431 GO:0006364(InterPro)|GO:0008408(InterPro)
Cco11g1827 702 MobiDBLite consensus disorder prediction 429 444 - -
Cco11g1827 702 CDD ERI-1_3'hExo_like 169 347 IPR047201 GO:0000175(InterPro)
Cco11g1827 702 PANTHER 3'-5' EXONUCLEASE ERI1-RELATED 106 372 IPR051274 GO:0000175(PANTHER)|GO:0000467(PANTHER)
Cco11g1827 702 SMART exoiiiendus 479 637 IPR013520 -
Cco11g1827 702 FunFam Interferon-stimulated exonuclease gene 20 476 647 - -
Cco11g1827 702 SUPERFAMILY Ribonuclease H-like 165 356 IPR012337 -
Cco11g1827 702 SUPERFAMILY Ribonuclease H-like 481 635 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1827 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g171 . . . . . . . . . . . Cma09g00836 . Car09g00751 Sed05g2541 Cpe06g00667 . Bhi09g03472 Tan01g4356 Cmetu07g0939 . Hepe01g1415 Mch11g1036 . Cla11g01731 Cam11g1800 Cec11g1821 Cco11g1827 Clacu11g1959 Cmu11g1769 Cre11g2177 . . Cone14ag1048 . Lsi04g02040 Csa04g02310 Chy07g00046 Cme07g00564 . . . . . . . . . . Cmo09g00831 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011810 0 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 26