Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1830 ATGGAGATTGAAGCTGTGAACCCTGAAATGGACACAGCTTCAACTATCACCATCAAAGGCATTCTCAGTCTCCTTGTTCAGAACGTCGATGAGAACAATGGCAGAAGACTGATTTCCCTTGGCATGGGTGACCCTTCTGCTTATTCTTGTTTTCATACTACCCGTATCGCTCAAGACGCCGTCGTTGATTCTCTTCAATCTGAGAAGTTCAATGGCTATGCTCCCACTGTTGGCCTCCCCCAAACTAGAAGGTCGATTGCTGAATATTTATCTCGAGATCTTCCATATAAGTTGACATCGGACGACGTTTTTGTTACGTCTGGATGCACACAAGCGATTGACGTTGCTTTGGCGATGCTTGCTCGCCCTGGTGCAAATATACTGCTTCCAAGGCCTGGTTTCCCAATCTATGAACTTTGTTCTGCATTTCGGAATCTTGAAGTCCGGCACTTTAATCTGCTTCCTCAACGAGGCTGGGAGGTTGATCTTGATGCCATTGAAACCCTTGCAGATAAGAACACTGTTGCCTTGGTTATTATCAACCCAGGGAATCCATGTGGAAACGTGTACAGCTATCAGCATCTGAAGAAGATTTCAGAGACTGCAGAAAAGCTTGGAATTCTTGTAATCGCTGATGAGGTTTACGGGCATCTTGCCTTTGGAAGTAAACCTTTTGTGCCAATGGGAGTCTTTGGATCAACTGTTCCTGTTCTCACCCTTGGATCTCTTTCAAAGAGATGGATAGTACCGGGATGGCGACTTGGGTGGTTCGTGACTAGTGATCCTTCTGGCACATTCAGAAAACCTAAGGTTATTGAGCGAATCAAGAAGTATTTTGATATATTAGGTGGCCCTGCAACATTCATCCAGGCTGCAGTACCTCACATCCTTGAGTCAACTGATGAGGTTTTCTTCAAGAAAACAATTAATATTCTGAAGCAAACCTCCGAAATGTGTTGCAGAAAGATCAAGGAAATCCCTTGCCTTACATGCACACACAGGCCAGAAGGATCAATGGCTATGATGGTAAGATTGAACATTGATCTTCTTGAAGATATCAGTGATGATATTGATTTTTGCTTCAAGCTTGCCAAAGAGGAATCACTCATCATTCTTCCAGGAACGGCGGTAGGGCTGAAGAACTGGATCCGAATTACTTTTGCAGTCGATCCGTCGTTTCTCGAAGAAGCACTTGGGAGGCTTAAATCGTTTTGTCAAAGGCATACAGCTTTGAACTCTCCTTCTATTGAAACTAAAGCGATTGGAAATGGAAGTGAAACTGACTTGAAGGTTCACGTGTTCTCATCATCTTTCGAGTTACTTGAAAAACTTCACGAGAAATGGAGTTTGGTAAAGAAGAAACCATATCCAGCAATGTATTCCAGCATTTTTGGTGGAATTATTACAGATTCAGCTATGATGGTGATTCCTATTGATGACCACATGGTTCATCGAGGCCATGGCGTGTTCGATACCGCCATTATTTTAAATGGACATTTGTATGAGTTGGACGCCCACCTTGATCGCTTCCTAAGATCAGCTTCAAAAGCGAAGATATCTTCTCCCTTCCCGCGATCGATTCTTCGGAGCATTCTTATCCAATTGACAGCAGCATCACAGCTCAAGAAAGGCACCTTAAGATACTGGTTAAGTGCAGGACCTGGAGATTTCTTGCTAACACCTGCTGGAAACGCAAAATCTGCATTCTATGCGGTAGCCATTGATGAGGACTTCTCTCAATGCAAAGAAGGGGTTAATGCGATAACATCCACAGTCCCGATGAAGTCGCCTGAATTTGCAACAATGAAAAATGTGAACTACCTACCAAATGTACTAGCCAAAATGGAAGCTGAAGAGAAAGGGGCATTTGCTTCCATTTGGGTTGATGAAGAAGGCTATATTGCAGAAGGTCCAAATGTGAATGTTGCATTTATAACCAATGAAAAGGAGCTTATCTTGCCTTCTTTCGACAAGGTTCTCTCGGGGTGCACTGCACTCCGACTTCTTAAGCTAGCTCCGAAGTTGGTTGAGGACGGAAAGCTGAAGAGTGTAGGAACTGCAAACCTTACTGTTAAGGAAGCCAAAGGCGCTGCCGAAATGATGTTTGTAGGAAGCACACTTCCACTATTGCCTATCATCTCATGGGATGAAGAACCTATTGGAGATGGAAGCGTCGGAGAACTGACGATGGCGCTATCGGATCTGCTTTGGGATGACATGGTCTCAGGTCCCGAAACAGAGAGAATACCAGTTTCATACACACAGTGA 2268 44.05 MEIEAVNPEMDTASTITIKGILSLLVQNVDENNGRRLISLGMGDPSAYSCFHTTRIAQDAVVDSLQSEKFNGYAPTVGLPQTRRSIAEYLSRDLPYKLTSDDVFVTSGCTQAIDVALAMLARPGANILLPRPGFPIYELCSAFRNLEVRHFNLLPQRGWEVDLDAIETLADKNTVALVIINPGNPCGNVYSYQHLKKISETAEKLGILVIADEVYGHLAFGSKPFVPMGVFGSTVPVLTLGSLSKRWIVPGWRLGWFVTSDPSGTFRKPKVIERIKKYFDILGGPATFIQAAVPHILESTDEVFFKKTINILKQTSEMCCRKIKEIPCLTCTHRPEGSMAMMVRLNIDLLEDISDDIDFCFKLAKEESLIILPGTAVGLKNWIRITFAVDPSFLEEALGRLKSFCQRHTALNSPSIETKAIGNGSETDLKVHVFSSSFELLEKLHEKWSLVKKKPYPAMYSSIFGGIITDSAMMVIPIDDHMVHRGHGVFDTAIILNGHLYELDAHLDRFLRSASKAKISSPFPRSILRSILIQLTAASQLKKGTLRYWLSAGPGDFLLTPAGNAKSAFYAVAIDEDFSQCKEGVNAITSTVPMKSPEFATMKNVNYLPNVLAKMEAEEKGAFASIWVDEEGYIAEGPNVNVAFITNEKELILPSFDKVLSGCTALRLLKLAPKLVEDGKLKSVGTANLTVKEAKGAAEMMFVGSTLPLLPIISWDEEPIGDGSVGELTMALSDLLWDDMVSGPETERIPVSYTQ 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30953532 30961396 - CcPI632755_11g018300.1 Cco11g1830 193066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1830 755 NCBIfam tyrosine/nicotianamine family aminotransferase 13 408 IPR005958 GO:0006520(InterPro)|GO:0008483(InterPro)|GO:0030170(InterPro)
Cco11g1830 755 FunFam tyrosine aminotransferase 56 301 - -
Cco11g1830 755 CDD ADCL_like 480 736 IPR017824 GO:0008696(InterPro)|GO:0030170(InterPro)|GO:0046656(InterPro)
Cco11g1830 755 Gene3D - 574 751 IPR043132 -
Cco11g1830 755 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 464 742 IPR036038 GO:0003824(InterPro)
Cco11g1830 755 CDD AAT_like 38 402 - -
Cco11g1830 755 Gene3D - 56 301 IPR015421 -
Cco11g1830 755 Gene3D Aspartate Aminotransferase, domain 1 39 405 IPR015422 -
Cco11g1830 755 FunFam D-amino-acid transaminase, chloroplastic 436 574 - -
Cco11g1830 755 PANTHER TYROSINE AMINOTRANSFERASE 7 409 - GO:0004838(PANTHER)|GO:0006572(PANTHER)
Cco11g1830 755 Gene3D - 428 573 IPR043131 -
Cco11g1830 755 FunFam D-alanine aminotransferase 576 743 - -
Cco11g1830 755 Pfam Aminotransferase class I and II 37 401 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Cco11g1830 755 Pfam Amino-transferase class IV 488 715 IPR001544 GO:0003824(InterPro)
Cco11g1830 755 FunFam Tyrosine aminotransferase 287 405 - -
Cco11g1830 755 SUPERFAMILY PLP-dependent transferases 14 407 IPR015424 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1830 K00815 - - csv:101212407 796.193
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1900 Cco-Chr2:31886664 Cco11g1830 Cco-Chr11:30953532 1.30E-135 dispersed
Cco02g1902 Cco-Chr2:31898003 Cco11g1830 Cco-Chr11:30953532 3.40E-134 dispersed
Cco09g0141 Cco-Chr9:1240603 Cco11g1830 Cco-Chr11:30953532 2.60E-13 dispersed
Cco11g1830 Cco-Chr11:30953532 Cco11g1575 Cco-Chr11:28639394 1.30E-96 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g179 . . Bda07g00312 . . . . . . . Cma01g01229 . Car01g01050 Car09g00755 Sed04g2424 Cpe06g00670 Cpe02g00687 Bhi09g03464 Tan01g4364 Cmetu07g0974 . Hepe01g1410 Mch11g1040 . Cla11g01734 Cam11g1804 Cec11g1824 Cco11g1830 Clacu11g1963 Cmu11g1773 Cre11g2180 Cone6ag0170 Cone9ag0196 Cone14ag1052 Cone15ag1044 Lsi04g02044 Csa04g02316 . Cme07g00569 . . . . . . . Bma14g00251 . Cmo01g01282 Cmo09g00835 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000682 2 4 1 1 1 2 3 3 2 2 2 3 4 2 2 5 3 10 3 3 2 6 3 5 4 3 4 4 2 5 96