Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1835 ATGGCTGCCGGAGACCGGTCGACATCCACCGCCTCAACCGCCGCGCCGCCTCATTCTGAAGAGATCCGCTACAGGGGCGTCAGAAAGAGGCCGTGGGGCCGCTACGCCGCGGAAATCCGGGACCCACGTAAGAAGACTAGGGTTTGGCTTGGCACATTCAACACCGCGGAAGAGGCGGCGCGTGCTTATGACACGGCCGCGCGTGAATTTAGAGGCGTTAATGCCAAAACTAACTTCCCCGTCCAGAACGAATTCCTAATCGTCGACAACAATAACAACTTCCGTAAATCCGCTGGCAGCAGTAGTCCCAGCCAGTGCAGCACCGTCGAATCCTCTTCCCCTTCGCCAGCGCCGTCGGATCCTTCCCTCACTCACTTCCTTGATGGCGGCGTCCACGCGCCGGCCACTAACCGCCCAATTTTCTTCTTCGACGCGTTGGCTCAGACAGAGAAGATCAGTGACTATCGTCGTACCGTTACCGTCGCCGTCGCCGGTGCTGGCGAATCCGTGAGCGACTCTGATTCGTCATCCGTAGTTGATTTCGACAAAACGCGGAAATCTCGGCCGTTGGATTTTGACCTGAATCTTCCGGCTGTGGAAGTTGTTTGA 609 57.47 MAAGDRSTSTASTAAPPHSEEIRYRGVRKRPWGRYAAEIRDPRKKTRVWLGTFNTAEEAARAYDTAAREFRGVNAKTNFPVQNEFLIVDNNNNFRKSAGSSSPSQCSTVESSSPSPAPSDPSLTHFLDGGVHAPATNRPIFFFDALAQTEKISDYRRTVTVAVAGAGESVSDSDSSSVVDFDKTRKSRPLDFDLNLPAVEVV 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31015923 31016531 + CcPI632755_11g018350.1 Cco11g1835 193071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1835 202 MobiDBLite consensus disorder prediction 96 120 - -
Cco11g1835 202 MobiDBLite consensus disorder prediction 1 21 - -
Cco11g1835 202 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677(InterPro)
Cco11g1835 202 CDD AP2 23 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1835 202 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1835 202 SMART rav1_2 23 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1835 202 MobiDBLite consensus disorder prediction 1 16 - -
Cco11g1835 202 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1835 202 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1835 202 Pfam AP2 domain 23 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1835 202 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1835 202 MobiDBLite consensus disorder prediction 96 129 - -
Cco11g1835 202 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 159 - -
Cco11g1835 202 FunFam Ethylene-responsive transcription factor 2 23 82 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1835 K09286 - - csv:101213540 264.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1942 Cco-Chr8:30296398 Cco11g1835 Cco-Chr11:31015923 1.50E-20 dispersed
Cco10g0478 Cco-Chr10:5710605 Cco11g1835 Cco-Chr11:31015923 1.00E-22 dispersed
Cco10g1096 Cco-Chr10:23255470 Cco11g1835 Cco-Chr11:31015923 2.00E-21 dispersed
Cco11g0324 Cco-Chr11:3253956 Cco11g1835 Cco-Chr11:31015923 5.00E-18 dispersed
Cco11g1835 Cco-Chr11:31015923 Cco11g1590 Cco-Chr11:28799486 6.70E-16 dispersed
Cco11g1835 Cco-Chr11:31015923 Cco04g2104 Cco-Chr4:34926769 1.30E-30 wgd
Cco11g1835 Cco-Chr11:31015923 Cco07g0252 Cco-Chr7:2582383 1.10E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g184 . . . Bda09g00524 . Bpe02g01898 . . . . Cma01g01222 Cma09g00846 Car01g01044 Car09g00759 Sed04g2417 . . Bhi09g03458 Tan01g4370 Cmetu07g1192 . Hepe01g1405 Mch11g1046 . Cla11g01739 Cam11g1809 Cec11g1829 Cco11g1835 Clacu11g1969 Cmu11g1779 Cre11g2185 Cone6ag0166 Cone9ag0191 . . Lsi04g02049 Csa04g02321 Chy07g00055 Cme07g00574 . . . . . Bpe01g00438 . . . Cmo01g01275 Cmo09g00840 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006814 3 1 2 1 2 0 2 1 0 1 1 1 2 1 1 2 0 2 0 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60312 PF00847 AP2 5.70E-14 CL0081 Cco TF