Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1840 ATGTTGACTTCTTTTTCCCTTCTCAGTGTTTCTCATTATGTTAGCCTGTCGCCATTGCGTATCTTAGTTCCTCCAACCCGTCATATGTCTTATGTTGACACCCACTTGCTTTACTTCGGGTTCAAGGGCTGCTGCGCATTATCTTATGTTTATATCAATTGTTCTTTTCATGAATTTGGATTCTGTTTCGTTGTCAAATCCATGGGTTTGGTTGTGTGTGCAAAGTGGGTGAAAAGTGAAAAAGATTGCGAGATGTCTGACGTGGCGAGTATAGCAGAGGCAGTGGCAGCAAGATTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGTGAGGATGAAATTGAGGATATTCAAAAGGAAATTTCTGTTTTGTCACAATGTCGATCACCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACTAAATTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATCTGCTTCAGTCTGGGCCGCCGCTTGATGAAATGTCAATTGCATGCATTTTACGGGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTTTGGATGGCGCCAGAGGTAATTCAGAACTCTGAAGGATACAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAATACCTGCTGAGAGACCCAGTGCAAAAGAGCTTCTGAAGCACCGATTCATTAAGAATGCCAGGAAGAGTCCCAGGCTTCAGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGAAGAAGATGCAGAAACACCGACAAATGGTCCTAGAGCTATAGGTGAAACGTCAGACACTGTGAAAGTATCAAGAAATGTAAGAGATGAAACTGTTCGTGCCAGCAACCAGAGTAAAGCTCCAAAGAATGCTGGATGGGACTTTAGTATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCACCTAGTAGAGTTGCAGAGAGTGGTAATTGGCTAGCTGCGTCTGGAAATGCACCACGCAACATATCAGAGAACACTAGAGATACATACAGTATGGGAGATGCTAGTGAAGATGAAGAGTTAAGTGGTTCAGGAACCGTTGTGATCCGGTCTCCCAGGGGATCTCAAGCATCTACTCAATTTCATAATGAAAGCAGTCCGTCTGGAAGTGCACAAGCATATTTTGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGACAGCGTGATGATTCTGATTCTCCCCAGACTCCAAAATCCAGATTGGGAATTCAAGAAAGGACTTCAAGTTTGTCTCCTGAAGACAGTGCATCAAACCTTGCCGAGGCAAAAGCTGCAATTCAAGCAGGATTGAGAAAAGCTAATGCAAGAGATAGATCAGCTATCAATAAACTCAACGACAGGAAGGAAAACAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGCATTCTCGTGAATTTTTTGATGCGCCACGAGCATTGCTAAAACCATCTCTATCAATTGATGAGGAAGAAAGTGCAAAAATAGCATCGTCTTCTGCACCATTATCGGTTTTGTTTATGTCATCCTTGAAAGAGGTATTTGCAGATGATTCGGAAGGATCGCCTGCTCGTACTGTAATTAATGCACTTATCAATATAGAACACCAAAAACTTGGATCATGTGAGGTTCTTGTTACCAAGTTGCTCCAGAAATTGGCCAGTTCCAAGGAATCTTCACTGAAAGATTTACAAGACTTGGCAACTCGCTTATTCACTAAGGCAAAGACAGTTCCTGAAAGTACACAAAATGTCACGGATTCTGATAGCAGCAAAAAGCAACCGAACAGGGAAATCCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCAAGGGATCTGAGTCCAGCTTAA 2277 41.94 MLTSFSLLSVSHYVSLSPLRILVPPTRHMSYVDTHLLYFGFKGCCALSYVYINCSFHEFGFCFVVKSMGLVVCAKWVKSEKDCEMSDVASIAEAVAARFSSLELIGRGSFGDVYKGEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLQERIRERPKYQIKEEDAETPTNGPRAIGETSDTVKVSRNVRDETVRASNQSKAPKNAGWDFSIGGPHSTGTVRSVVKPPQIRERKPEIPYGQAAPSRVAESGNWLAASGNAPRNISENTRDTYSMGDASEDEELSGSGTVVIRSPRGSQASTQFHNESSPSGSAQAYFEDTSFSGTVVMRGQRDDSDSPQTPKSRLGIQERTSSLSPEDSASNLAEAKAAIQAGLRKANARDRSAINKLNDRKENRRTEQTVSSSDSSRHSREFFDAPRALLKPSLSIDEEESAKIASSSAPLSVLFMSSLKEVFADDSEGSPARTVINALINIEHQKLGSCEVLVTKLLQKLASSKESSLKDLQDLATRLFTKAKTVPESTQNVTDSDSSKKQPNREIHSNSNLSSLARFLLSRWQGQVSRDLSPA 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31059705 31074592 - CcPI632755_11g018400.1 Cco11g1840 193076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1840 758 MobiDBLite consensus disorder prediction 709 732 - -
Cco11g1840 758 MobiDBLite consensus disorder prediction 482 507 - -
Cco11g1840 758 MobiDBLite consensus disorder prediction 566 603 - -
Cco11g1840 758 MobiDBLite consensus disorder prediction 338 361 - -
Cco11g1840 758 MobiDBLite consensus disorder prediction 520 553 - -
Cco11g1840 758 Pfam Protein kinase domain 119 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1840 758 ProSiteProfiles Protein kinase domain profile. 99 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1840 758 Gene3D Transferase(Phosphotransferase) domain 1 96 367 - -
Cco11g1840 758 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 89 722 IPR050629 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
Cco11g1840 758 MobiDBLite consensus disorder prediction 338 507 - -
Cco11g1840 758 MobiDBLite consensus disorder prediction 520 552 - -
Cco11g1840 758 SUPERFAMILY Protein kinase-like (PK-like) 97 364 IPR011009 -
Cco11g1840 758 MobiDBLite consensus disorder prediction 448 464 - -
Cco11g1840 758 FunFam serine/threonine-protein kinase dst1 isoform X1 115 366 - -
Cco11g1840 758 SMART serkin_6 99 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1840 758 CDD STKc_MST3_like 98 352 - -
Cco11g1840 758 MobiDBLite consensus disorder prediction 572 591 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0526 Cco-Chr5:4222715 Cco11g1840 Cco-Chr11:31059705 4.90E-50 dispersed
Cco10g1179 Cco-Chr10:24408409 Cco11g1840 Cco-Chr11:31059705 7.70E-42 dispersed
Cco10g1271 Cco-Chr10:25464009 Cco11g1840 Cco-Chr11:31059705 5.60E-49 dispersed
Cco11g1192 Cco-Chr11:23407614 Cco11g1840 Cco-Chr11:31059705 1.90E-64 dispersed
Cco11g1840 Cco-Chr11:31059705 Cco10g1280 Cco-Chr10:25700627 1.60E-25 dispersed
Cco11g1840 Cco-Chr11:31059705 Cco07g0773 Cco-Chr7:16443287 2.50E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87266 PF00069 Pkinase 4.80E-56 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1840 K08838 - csv:101214412 1226.46