Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1840 ATGTTGACTTCTTTTTCCCTTCTCAGTGTTTCTCATTATGTTAGCCTGTCGCCATTGCGTATCTTAGTTCCTCCAACCCGTCATATGTCTTATGTTGACACCCACTTGCTTTACTTCGGGTTCAAGGGCTGCTGCGCATTATCTTATGTTTATATCAATTGTTCTTTTCATGAATTTGGATTCTGTTTCGTTGTCAAATCCATGGGTTTGGTTGTGTGTGCAAAGTGGGTGAAAAGTGAAAAAGATTGCGAGATGTCTGACGTGGCGAGTATAGCAGAGGCAGTGGCAGCAAGATTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGTGAGGATGAAATTGAGGATATTCAAAAGGAAATTTCTGTTTTGTCACAATGTCGATCACCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACTAAATTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATCTGCTTCAGTCTGGGCCGCCGCTTGATGAAATGTCAATTGCATGCATTTTACGGGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTTTGGATGGCGCCAGAGGTAATTCAGAACTCTGAAGGATACAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAATACCTGCTGAGAGACCCAGTGCAAAAGAGCTTCTGAAGCACCGATTCATTAAGAATGCCAGGAAGAGTCCCAGGCTTCAGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGAAGAAGATGCAGAAACACCGACAAATGGTCCTAGAGCTATAGGTGAAACGTCAGACACTGTGAAAGTATCAAGAAATGTAAGAGATGAAACTGTTCGTGCCAGCAACCAGAGTAAAGCTCCAAAGAATGCTGGATGGGACTTTAGTATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCACCTAGTAGAGTTGCAGAGAGTGGTAATTGGCTAGCTGCGTCTGGAAATGCACCACGCAACATATCAGAGAACACTAGAGATACATACAGTATGGGAGATGCTAGTGAAGATGAAGAGTTAAGTGGTTCAGGAACCGTTGTGATCCGGTCTCCCAGGGGATCTCAAGCATCTACTCAATTTCATAATGAAAGCAGTCCGTCTGGAAGTGCACAAGCATATTTTGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGACAGCGTGATGATTCTGATTCTCCCCAGACTCCAAAATCCAGATTGGGAATTCAAGAAAGGACTTCAAGTTTGTCTCCTGAAGACAGTGCATCAAACCTTGCCGAGGCAAAAGCTGCAATTCAAGCAGGATTGAGAAAAGCTAATGCAAGAGATAGATCAGCTATCAATAAACTCAACGACAGGAAGGAAAACAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGCATTCTCGTGAATTTTTTGATGCGCCACGAGCATTGCTAAAACCATCTCTATCAATTGATGAGGAAGAAAGTGCAAAAATAGCATCGTCTTCTGCACCATTATCGGTTTTGTTTATGTCATCCTTGAAAGAGGTATTTGCAGATGATTCGGAAGGATCGCCTGCTCGTACTGTAATTAATGCACTTATCAATATAGAACACCAAAAACTTGGATCATGTGAGGTTCTTGTTACCAAGTTGCTCCAGAAATTGGCCAGTTCCAAGGAATCTTCACTGAAAGATTTACAAGACTTGGCAACTCGCTTATTCACTAAGGCAAAGACAGTTCCTGAAAGTACACAAAATGTCACGGATTCTGATAGCAGCAAAAAGCAACCGAACAGGGAAATCCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCAAGGGATCTGAGTCCAGCTTAA 2277 41.94 MLTSFSLLSVSHYVSLSPLRILVPPTRHMSYVDTHLLYFGFKGCCALSYVYINCSFHEFGFCFVVKSMGLVVCAKWVKSEKDCEMSDVASIAEAVAARFSSLELIGRGSFGDVYKGEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLQERIRERPKYQIKEEDAETPTNGPRAIGETSDTVKVSRNVRDETVRASNQSKAPKNAGWDFSIGGPHSTGTVRSVVKPPQIRERKPEIPYGQAAPSRVAESGNWLAASGNAPRNISENTRDTYSMGDASEDEELSGSGTVVIRSPRGSQASTQFHNESSPSGSAQAYFEDTSFSGTVVMRGQRDDSDSPQTPKSRLGIQERTSSLSPEDSASNLAEAKAAIQAGLRKANARDRSAINKLNDRKENRRTEQTVSSSDSSRHSREFFDAPRALLKPSLSIDEEESAKIASSSAPLSVLFMSSLKEVFADDSEGSPARTVINALINIEHQKLGSCEVLVTKLLQKLASSKESSLKDLQDLATRLFTKAKTVPESTQNVTDSDSSKKQPNREIHSNSNLSSLARFLLSRWQGQVSRDLSPA 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31059705 31074592 - CcPI632755_11g018400.1 Cco11g1840 193076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1840 758 MobiDBLite consensus disorder prediction 709 732 - -
Cco11g1840 758 MobiDBLite consensus disorder prediction 482 507 - -
Cco11g1840 758 MobiDBLite consensus disorder prediction 566 603 - -
Cco11g1840 758 MobiDBLite consensus disorder prediction 338 361 - -
Cco11g1840 758 MobiDBLite consensus disorder prediction 520 553 - -
Cco11g1840 758 Pfam Protein kinase domain 119 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1840 758 ProSiteProfiles Protein kinase domain profile. 99 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1840 758 Gene3D Transferase(Phosphotransferase) domain 1 96 367 - -
Cco11g1840 758 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 89 722 IPR050629 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
Cco11g1840 758 MobiDBLite consensus disorder prediction 338 507 - -
Cco11g1840 758 MobiDBLite consensus disorder prediction 520 552 - -
Cco11g1840 758 SUPERFAMILY Protein kinase-like (PK-like) 97 364 IPR011009 -
Cco11g1840 758 MobiDBLite consensus disorder prediction 448 464 - -
Cco11g1840 758 FunFam serine/threonine-protein kinase dst1 isoform X1 115 366 - -
Cco11g1840 758 SMART serkin_6 99 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1840 758 CDD STKc_MST3_like 98 352 - -
Cco11g1840 758 MobiDBLite consensus disorder prediction 572 591 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1840 K08838 - - csv:101214412 1226.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0526 Cco-Chr5:4222715 Cco11g1840 Cco-Chr11:31059705 4.90E-50 dispersed
Cco10g1179 Cco-Chr10:24408409 Cco11g1840 Cco-Chr11:31059705 7.70E-42 dispersed
Cco10g1271 Cco-Chr10:25464009 Cco11g1840 Cco-Chr11:31059705 5.60E-49 dispersed
Cco11g1192 Cco-Chr11:23407614 Cco11g1840 Cco-Chr11:31059705 1.90E-64 dispersed
Cco11g1840 Cco-Chr11:31059705 Cco10g1280 Cco-Chr10:25700627 1.60E-25 dispersed
Cco11g1840 Cco-Chr11:31059705 Cco07g0773 Cco-Chr7:16443287 2.50E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g189 . . . . . . . . . . Cma01g01216 Cma09g00851 Car01g01040 Car09g00765 . Cpe06g00678 Cpe02g00695 Bhi09g03449 . . . . Mch11g1051 . Cla11g01746 Cam11g1814 Cec11g1834 Cco11g1840 Clacu11g1974 Cmu11g1784 Cre11g2191 Cone6ag0161 Cone9ag0187 Cone14ag1056 . Lsi04g02056 Csa04g02327 Chy07g00059 Cme07g00580 . . . . . . . . . Cmo01g01271 Cmo09g00844 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco11g1840 . 85 756 MAP Kinase Kinase Kinase Kinase AT1G53165 61.1 6.9e-214 740.7
Cco07g0773 . 270 530 MAP Kinase Kinase Kinase Kinase AT1G53165 53.4 3.9e-68 256.5
Cco11g1192 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.3e-67 253.4
Cco11g1840 . 85 755 MAP Kinase Kinase Kinase Kinase AT3G15220 63.1 7.1e-219 757.3
Cco07g0773 . 270 530 MAP Kinase Kinase Kinase Kinase AT3G15220 51.9 1.8e-68 257.7
Cco11g1192 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.5e-67 254.6
Cco11g1192 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 5.4e-242 834.3
Cco07g0773 . 4 841 MAP Kinase Kinase Kinase Kinase AT1G69220 57.9 2.3e-240 828.9
Cco09g2111 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.2 7.4e-253 870.2
Cco05g0526 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.2e-96 351.3
Cco10g0091 . 7 721 MAP Kinase Kinase Kinase Kinase AT4G24100 64.9 1.0e-247 853.2
Cco10g0091 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 64.7 1.4e-246 849.4
Cco10g1271 . 4 478 MAP Kinase Kinase Kinase Kinase AT1G70430 52.1 1.2e-132 470.7
Cco10g0091 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 4.7e-118 422.2
Cco10g1271 . 1 676 MAP Kinase Kinase Kinase Kinase AT1G79640 59.7 5.4e-216 747.7
Cco09g2111 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.7e-103 372.9
Cco10g1271 . 8 324 MAP Kinase Kinase Kinase Kinase AT1G23700 53.1 2.0e-87 320.1
Cco10g0091 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 2.3e-75 280.0
Cco05g0526 . 32 488 MAP Kinase Kinase Kinase Kinase AT4G14480 59.4 7.7e-143 504.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87266 PF00069 Pkinase 4.80E-56 CL0016 Cco PK