Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1840 | ATGTTGACTTCTTTTTCCCTTCTCAGTGTTTCTCATTATGTTAGCCTGTCGCCATTGCGTATCTTAGTTCCTCCAACCCGTCATATGTCTTATGTTGACACCCACTTGCTTTACTTCGGGTTCAAGGGCTGCTGCGCATTATCTTATGTTTATATCAATTGTTCTTTTCATGAATTTGGATTCTGTTTCGTTGTCAAATCCATGGGTTTGGTTGTGTGTGCAAAGTGGGTGAAAAGTGAAAAAGATTGCGAGATGTCTGACGTGGCGAGTATAGCAGAGGCAGTGGCAGCAAGATTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGTGAGGATGAAATTGAGGATATTCAAAAGGAAATTTCTGTTTTGTCACAATGTCGATCACCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACTAAATTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATCTGCTTCAGTCTGGGCCGCCGCTTGATGAAATGTCAATTGCATGCATTTTACGGGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTTTGGATGGCGCCAGAGGTAATTCAGAACTCTGAAGGATACAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAATACCTGCTGAGAGACCCAGTGCAAAAGAGCTTCTGAAGCACCGATTCATTAAGAATGCCAGGAAGAGTCCCAGGCTTCAGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGAAGAAGATGCAGAAACACCGACAAATGGTCCTAGAGCTATAGGTGAAACGTCAGACACTGTGAAAGTATCAAGAAATGTAAGAGATGAAACTGTTCGTGCCAGCAACCAGAGTAAAGCTCCAAAGAATGCTGGATGGGACTTTAGTATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCACCTAGTAGAGTTGCAGAGAGTGGTAATTGGCTAGCTGCGTCTGGAAATGCACCACGCAACATATCAGAGAACACTAGAGATACATACAGTATGGGAGATGCTAGTGAAGATGAAGAGTTAAGTGGTTCAGGAACCGTTGTGATCCGGTCTCCCAGGGGATCTCAAGCATCTACTCAATTTCATAATGAAAGCAGTCCGTCTGGAAGTGCACAAGCATATTTTGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGACAGCGTGATGATTCTGATTCTCCCCAGACTCCAAAATCCAGATTGGGAATTCAAGAAAGGACTTCAAGTTTGTCTCCTGAAGACAGTGCATCAAACCTTGCCGAGGCAAAAGCTGCAATTCAAGCAGGATTGAGAAAAGCTAATGCAAGAGATAGATCAGCTATCAATAAACTCAACGACAGGAAGGAAAACAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGCATTCTCGTGAATTTTTTGATGCGCCACGAGCATTGCTAAAACCATCTCTATCAATTGATGAGGAAGAAAGTGCAAAAATAGCATCGTCTTCTGCACCATTATCGGTTTTGTTTATGTCATCCTTGAAAGAGGTATTTGCAGATGATTCGGAAGGATCGCCTGCTCGTACTGTAATTAATGCACTTATCAATATAGAACACCAAAAACTTGGATCATGTGAGGTTCTTGTTACCAAGTTGCTCCAGAAATTGGCCAGTTCCAAGGAATCTTCACTGAAAGATTTACAAGACTTGGCAACTCGCTTATTCACTAAGGCAAAGACAGTTCCTGAAAGTACACAAAATGTCACGGATTCTGATAGCAGCAAAAAGCAACCGAACAGGGAAATCCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCAAGGGATCTGAGTCCAGCTTAA | 2277 | 41.94 | MLTSFSLLSVSHYVSLSPLRILVPPTRHMSYVDTHLLYFGFKGCCALSYVYINCSFHEFGFCFVVKSMGLVVCAKWVKSEKDCEMSDVASIAEAVAARFSSLELIGRGSFGDVYKGEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLQERIRERPKYQIKEEDAETPTNGPRAIGETSDTVKVSRNVRDETVRASNQSKAPKNAGWDFSIGGPHSTGTVRSVVKPPQIRERKPEIPYGQAAPSRVAESGNWLAASGNAPRNISENTRDTYSMGDASEDEELSGSGTVVIRSPRGSQASTQFHNESSPSGSAQAYFEDTSFSGTVVMRGQRDDSDSPQTPKSRLGIQERTSSLSPEDSASNLAEAKAAIQAGLRKANARDRSAINKLNDRKENRRTEQTVSSSDSSRHSREFFDAPRALLKPSLSIDEEESAKIASSSAPLSVLFMSSLKEVFADDSEGSPARTVINALINIEHQKLGSCEVLVTKLLQKLASSKESSLKDLQDLATRLFTKAKTVPESTQNVTDSDSSKKQPNREIHSNSNLSSLARFLLSRWQGQVSRDLSPA | 758 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 31059705 | 31074592 | - | CcPI632755_11g018400.1 | Cco11g1840 | 193076 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1840 | 758 | MobiDBLite | consensus disorder prediction | 709 | 732 | - | - | |
Cco11g1840 | 758 | MobiDBLite | consensus disorder prediction | 482 | 507 | - | - | |
Cco11g1840 | 758 | MobiDBLite | consensus disorder prediction | 566 | 603 | - | - | |
Cco11g1840 | 758 | MobiDBLite | consensus disorder prediction | 338 | 361 | - | - | |
Cco11g1840 | 758 | MobiDBLite | consensus disorder prediction | 520 | 553 | - | - | |
Cco11g1840 | 758 | Pfam | Protein kinase domain | 119 | 332 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g1840 | 758 | ProSiteProfiles | Protein kinase domain profile. | 99 | 332 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g1840 | 758 | Gene3D | Transferase(Phosphotransferase) domain 1 | 96 | 367 | - | - | |
Cco11g1840 | 758 | PANTHER | STERILE20-LIKE KINASE, ISOFORM B-RELATED | 89 | 722 | IPR050629 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER) | |
Cco11g1840 | 758 | MobiDBLite | consensus disorder prediction | 338 | 507 | - | - | |
Cco11g1840 | 758 | MobiDBLite | consensus disorder prediction | 520 | 552 | - | - | |
Cco11g1840 | 758 | SUPERFAMILY | Protein kinase-like (PK-like) | 97 | 364 | IPR011009 | - | |
Cco11g1840 | 758 | MobiDBLite | consensus disorder prediction | 448 | 464 | - | - | |
Cco11g1840 | 758 | FunFam | serine/threonine-protein kinase dst1 isoform X1 | 115 | 366 | - | - | |
Cco11g1840 | 758 | SMART | serkin_6 | 99 | 332 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g1840 | 758 | CDD | STKc_MST3_like | 98 | 352 | - | - | |
Cco11g1840 | 758 | MobiDBLite | consensus disorder prediction | 572 | 591 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0526 | Cco-Chr5:4222715 | Cco11g1840 | Cco-Chr11:31059705 | 4.90E-50 | dispersed | |
Cco10g1179 | Cco-Chr10:24408409 | Cco11g1840 | Cco-Chr11:31059705 | 7.70E-42 | dispersed | |
Cco10g1271 | Cco-Chr10:25464009 | Cco11g1840 | Cco-Chr11:31059705 | 5.60E-49 | dispersed | |
Cco11g1192 | Cco-Chr11:23407614 | Cco11g1840 | Cco-Chr11:31059705 | 1.90E-64 | dispersed | |
Cco11g1840 | Cco-Chr11:31059705 | Cco10g1280 | Cco-Chr10:25700627 | 1.60E-25 | dispersed | |
Cco11g1840 | Cco-Chr11:31059705 | Cco07g0773 | Cco-Chr7:16443287 | 2.50E-63 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87266 | PF00069 | Pkinase | 4.80E-56 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1840 | K08838 | - | csv:101214412 | 1226.46 |