Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1844 ATGACTGGGAAAGAGATTCTCCACAAGATGAAGGAAAAAGTTGGGCTATGTTCCTCGGATCCAGACTCGGGAAAAGGAAAGAGCAAGATGTCCAAGCATGTCACACATGGTTTTCACTTGGTGGAAGGGAAATCAAATCATGCTATGGAAGATTATGTTGTTGCAGAGTTTAAGCAAGTTGATCATCATGAGCTTGGTTTATTTGCAATATTCGATGGCCATTTGAGCAATTCTATTCCTGATTATCTACAATCGCATTTATTTTCTAATATAATAAATGAGCCTGATTTCTGGACCGATCCAAAGAACGCAGTCAGGAAAGCATACGAGGAAACTGATGCTTACATATTAGAGAAAGCTGTTGATTTTAGTCATGGGGGTTCAACTGCTGTTACGGCCATATTGATAGACTGTAAGACACTAGTAGTGGGCAATGTGGGGGACTCCCGTGCAGTTATCTGTAGTAAAGGCAAGGCCAGACAATTATCAATCGATCATGAGCCGAGCTTTGAGAGAAAAAGCATTGAGGAAAGAGGTGGTTTTGTATCAAACTTTCCTGGAGATGTTCCGCGTGTTGATGGGCAGTTGGCAGTCGCAAGGGCGTTTGGTGATAGGAGCTTAAAGAAACATTTGAGTTCAGAGCCTTATGTGGTAATGGAGATGATAGATGACGAGACCGAATTTGTTATCTTGGCAAGTGATGGATTGTGGAAGGTTATGTCAAATGAAGAAGCGGTAGACTCGATCAGGCATATAAAAGACGCGCATGCAGCTGCTAAAAACCTGACAGAGGAGGCCCTCAAGAGGAAGAGCAAAGATGATATCTCTTGTATAGTTGTGAGATTTCACTGA 852 42.25 MTGKEILHKMKEKVGLCSSDPDSGKGKSKMSKHVTHGFHLVEGKSNHAMEDYVVAEFKQVDHHELGLFAIFDGHLSNSIPDYLQSHLFSNIINEPDFWTDPKNAVRKAYEETDAYILEKAVDFSHGGSTAVTAILIDCKTLVVGNVGDSRAVICSKGKARQLSIDHEPSFERKSIEERGGFVSNFPGDVPRVDGQLAVARAFGDRSLKKHLSSEPYVVMEMIDDETEFVILASDGLWKVMSNEEAVDSIRHIKDAHAAAKNLTEEALKRKSKDDISCIVVRFH 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31126697 31129164 + CcPI632755_11g018440.1 Cco11g1844 193080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1844 283 ProSiteProfiles PPM-type phosphatase domain profile. 35 282 IPR001932 -
Cco11g1844 283 SMART PP2C_4 31 280 IPR001932 -
Cco11g1844 283 FunFam Probable protein phosphatase 2C 39 25 283 - -
Cco11g1844 283 Pfam Protein phosphatase 2C 47 275 IPR001932 -
Cco11g1844 283 PANTHER PROTEIN PHOSPHATASE 31 280 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco11g1844 283 SUPERFAMILY PP2C-like 31 283 IPR036457 -
Cco11g1844 283 CDD PP2Cc 43 282 IPR001932 -
Cco11g1844 283 Gene3D - 16 283 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2310 Cco-Chr4:36628561 Cco11g1844 Cco-Chr11:31126697 1.80E-84 dispersed
Cco10g0895 Cco-Chr10:18857304 Cco11g1844 Cco-Chr11:31126697 4.20E-85 dispersed
Cco11g0971 Cco-Chr11:15423598 Cco11g1844 Cco-Chr11:31126697 1.30E-17 dispersed
Cco11g1461 Cco-Chr11:27421448 Cco11g1844 Cco-Chr11:31126697 2.90E-86 dispersed
Cco08g0776 Cco-Chr8:19538892 Cco11g1844 Cco-Chr11:31126697 5.90E-46 transposed
Cco11g1844 Cco-Chr11:31126697 Cco07g0249 Cco-Chr7:2544210 1.90E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1844 K17506 - csv:101215129 533.102