Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1847 ATGCCGGAAAACCCACATCACCCTCTTCTCCAAGTAACCCATGCCGGTGACGGCGGAACTGACCGGTCCATTTGGTGGAAGAAACTGTTCCACAAGGAGGAGGTCATCAAACAGCTCGCCATTTCATTTCCCATGATTCTCACTAACGTCTTCTACTACCTTATCCCTTTGATTTCCGTCATGTTCGCCGGCCATCTCGGCCAGCTCGAACTCGCCGGAGCTACTCTCGCCAATTCCTGGGCCACCGTCACTGGATTTGCTTTTATGACGGGGCTTAGCGGCGCACTGGAGACACTTTGCGGCCAAGGGTTTGGGGCGAAGTTATACAGATGCTTAGGGATTCATCTGCAATCTTCTTGCATAATCTCCTTCTCCTTCTCGATTTTCATTTCCCTTTTATGGTTCTACACAGAGCCGGTCTTGAAATTGCTGCGGCAAGATCCTGACGTGTCGAAAACGGCGGCTCGGTATGTGAAATTTCTGGTTCCTGGGATTTTCGCTTATGGGTTTCTACAGAACAGTGTGAGGTTTATTCAAGCTCAGTCGGATGTTATGTTTCTGGCGGTGCTCTCTGCAATTCCTTTAGTTCTTCACCTTGGTGTTGCTTATGCTTTTGTGAACTGGACAAGTTTGGGGCTGGAAGGAGCTGCTTTAGCTGCTTCCATTTCATTGTGGGTGGCTTTTCTGGCTGTGGCTATTCATGTGTTTATGTCTCAGAAATATGAACTCACATGGGGAGGATTTTCTGTTGAATCTTTCAACTACATATTTGTCAACTTGAAACTTGCTTTGCCTTCTGCTGCAATGGTTTGTTTGGAGTATTGGGCATTTGAGATTCTTGTGTTTTTGGCTGGATTGGCTCCAAACTCAGAAACAAATACATCTTTGATTGCAATTTGTGTGAACACAGAAGCTATTGCCTACATGATCACGTATGGACTCAGTGCAGCTGCAAGCACAAGGGTGTCAAATGAGTTGGGGGCAGGCAATCCTGAGAGAGGAAGACAGGCCATGTTTGTCACTCTTCAACTCTCAGTTCTTCTAGGCCTTACAGTTGTTCTTCTTCTAGCATTTGGCCACAACATCTGGGCTGGATTCTTCAGTGATAGTCCTGTGATTATACAAGCCTTTGCCTCCATGACACCCCTTCTCACCATTTCCATACTTGCAGACTCCGTGCAAGGCGTATTATCAGGGGTGGCTAGAGGATGCGGGTGGCAACACATGGTTGTATTTGTAAATTTGTCTACATTCTATGTTGTTGGTATTTCAACCGCAGTCTTTCTGGAATTCAGAATGAAACTTTATGCCAAGGGGTTGTGGATTGGTTTGATCTGTGGTTTGTTATGCCAAACTTTGACTCTGTTGATATTAATAGTTCGCTCAAAGTGGACAAGAATTGAGCTCTCTGATCATCAAGGCAAACCAAATCCAGCTTTGGCTTGA 1446 45.85 MPENPHHPLLQVTHAGDGGTDRSIWWKKLFHKEEVIKQLAISFPMILTNVFYYLIPLISVMFAGHLGQLELAGATLANSWATVTGFAFMTGLSGALETLCGQGFGAKLYRCLGIHLQSSCIISFSFSIFISLLWFYTEPVLKLLRQDPDVSKTAARYVKFLVPGIFAYGFLQNSVRFIQAQSDVMFLAVLSAIPLVLHLGVAYAFVNWTSLGLEGAALAASISLWVAFLAVAIHVFMSQKYELTWGGFSVESFNYIFVNLKLALPSAAMVCLEYWAFEILVFLAGLAPNSETNTSLIAICVNTEAIAYMITYGLSAAASTRVSNELGAGNPERGRQAMFVTLQLSVLLGLTVVLLLAFGHNIWAGFFSDSPVIIQAFASMTPLLTISILADSVQGVLSGVARGCGWQHMVVFVNLSTFYVVGISTAVFLEFRMKLYAKGLWIGLICGLLCQTLTLLILIVRSKWTRIELSDHQGKPNPALA 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31150363 31152990 + CcPI632755_11g018470.1 Cco11g1847 193083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1847 481 NCBIfam MATE family efflux transporter 44 441 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cco11g1847 481 Pfam MatE 265 426 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cco11g1847 481 Pfam MatE 44 203 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cco11g1847 481 CDD MATE_eukaryotic 34 466 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Cco11g1847 481 PANTHER MULTIDRUG RESISTANCE PROTEIN 32 465 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1847 K03327 - - csv:101203764 821.231
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1097 Cco-Chr5:9775169 Cco11g1847 Cco-Chr11:31150363 3.70E-159 dispersed
Cco11g1294 Cco-Chr11:25480679 Cco11g1847 Cco-Chr11:31150363 8.60E-94 dispersed
Cco11g1295 Cco-Chr11:25498681 Cco11g1847 Cco-Chr11:31150363 5.60E-93 dispersed
Cco11g1847 Cco-Chr11:31150363 Cco05g2494 Cco-Chr5:33323675 2.20E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g195 . . . . . . . . . . . Cma09g00855 . Car09g00769 . . . Bhi09g03441 . . . Hepe01g1394 Mch11g1059 . Cla11g01753 Cam11g1820 Cec11g1840 Cco11g1847 Clacu11g1980 Cmu11g1790 Cre11g2197 . . . . . . . . Blo07g00952 Blo10g00756 . Bda12g00836 . . . . . . Cmo09g00848 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001632 1 2 4 2 2 0 2 2 0 2 1 2 2 2 2 2 1 2 2 1 1 3 4 3 4 2 2 4 8 2 67