Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1856 ATGGGTTTCTTCGCCGCTTGGGGGACGATGGGCTTGTTGCAGAAGTTGAATTCTACTCTTTCATGGCGATGTTTTCAGGAAGATGGAGATATTGATATGTTTTTGGGCTTGGGTGTGAGCTTTAAGTGGATAACAATGGAGGGATCATCTGATCACCTTAGGAACCAGGATGATATATCTGGGGTTTGTGAGGAAGATATACTAGCTGACCCTTATGTGCGTTCTCATAAATGGAGTGATATTAGCTTGAGGCAATGGTTGGATAAGCCAGGAAGATCCGTGGATGCTCTTGAATGTCTTCATATATTTAGGCAAATAGTGGAGATTGTTAATATTGCTCATGCTCAAGGCATTGTTGTTCACAATGTGCGTCCTTCGTGCTTTGTGATGTCTTCTTTCAACCATGTAACTTTTATTGAGTCGGCATCATGTTCAGATTCTGGCTCTGATTCTCTTGAGGATGGCCTAAATAGTCAAATGGCAGAGGTTAAACCATCATCTTCTCCCTTTCCAAGCAGCCTTGGAAGTGAGGGTTTCCGATCTGTTATGACCCCCATAAACGCATTGTCGGAAACTAGTTGCATGCAGTCAAGTTCAGTATATGCTGCCCAAGTATCGTTAAATGAAGGGTCTGGAAAATGTAGAAAAAAAGATAGAAGACATATTGATGAAACAGAAGATAAGATGCAATCATTTCCCATGAAACAGATATTGGCCATGGAGACTACATGGTACACTAGCCCAGAAGAGACTTCTGATGGCCCAAGTTCGAGTGCTTCAGATATCTACCGGTTAGGAGTTCTTCTTTTTGAGTTATTCTGCTCCTTCAGCTCGAGAGAAGAGAAGAGTAGAACTATGTCCAGCTTGAGGCATAGAGTGCTTCCTACTCAACTGCTGTTGAAGTGGCCAAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCTGAGCCAACTAATCGACCTAAGCTAAGCGATATATTGCAGAGTGAATTTCTCAATGAACCTAAAGATGACCTAGAAGAACGTGAAGCAGCAATCAAGCTTCGAAAAAAAATTGAAGAGCAGGAGTTACTGCTAGAATTCCTTTTGCTTATGCAACAAAGAAAACAGGAAGCTGCTCATAAGCTGCAAGATACTATTTCGTTTTTGTGCAGTGATATTGAACAAGTTATGAGGCACCAAACTAATTTCAAGAAAAAGATTGGGTCACGCACAGATCTTGTGAAGGACAATCATTTGCCATTAAATCTCCCTTCAATGCCTCCTGTCAGGAATACTGATTCTGCTGGTTTGGGATCAAGGAAACGATTTAGGCCAGGAATTTTGACCCATGATATAGAAGCATGCGATGATAATCTCGATGACTGTGAGAAGTCGAATCTAGACAATGAAAATGAACAAGGTGTACTTTTTAAGAGTTCTCGATTAATGAAGAACTTCAAGAAATTGGAGTTGGCATATTTTTTGATGAGAGGTAGAGTAAACAAGCCATCAAGGCAGTTTGTTAAACACTCGTCAATAAGTAGCGATGGTAGGGGGTCAGTAGTTTTGACTGAAAGAAGTTCAGTTAATAATTTGGCTTCAAAAGAGAGTTGCAATGATAAGAGACAAGGTGGGTGGATAAGTCCGTTCCTGGAGGGTTTGTGCAAGTATCTATCCTTTAGCAAGTTAAAAGTCAAGGCAGACTTGAAGCAAGGAGATCTATTGAATTCCTCCAACTTAGTATGTTCTCTCAGTTTTGATCGCGATGGAGAATTTTTTGCCACAGCTGGTGTTAATAGGAAAATTAAAGTGTTTGGATATGACTCAATTGTGAACGAAGACCGTGATATTCATTACCCTGTTGTTGAAATGGCTAGCAGGTCGAAACTAAGCAGTGTTTGTTGGAATCGTTACATCAAAAGTCAAATTGCTTCAAGTAATTTTGAGGGTGTAGTGCAGGTATGGGATGTCACGAGAAGTCAAGTGGTCACTGAAATGGGAGAACATGAGAGGCGCGTATGGTCCATTGACTTCTCATCAGCAGATCCTACAATTTTGGCTAGTGGGAGTGATGATGGTTCAGTTAAGCTCTGGAGTATCAATCAGGGTATAAGTATTGGAACAATCAGAACAAAAGCCAATGTCTGCTGTGTACAGTTTCCTGTGGATTCTGGTCGGTCCCTTGCATTTGGTTCAGCTGATCACAAAATTTATTACTATGATATGCGGAATATAAGAGTACCTTTGTGCACCTTCACTGGACATAACAAAACTGTGAGTTACGTCAAGTATATAGACTCGAGCACTCTTGTCTCTGCATCCACTGATAACACCTTGAAGCTCTGGGATTTGTCCATGTGCACATCCCGGGTTGTTGATTCTCCTGTCCAGTCCTTCACGGGCCACATGAATATCAAGAACTTTGTGGGGCTGTCCGTCTCTGATGGTTACATTGCTACAGGTTCAGAGACAAATGAGGTTTTCATTTACCACAAAGCCTTTCCAATGCCAGCATTGTCGTACAAGTTTCAAATGGATCCTCTTTCGAATCATGAAATGGACGACTCTGCCCAATTTATCTCTTCGGTTTGTTGGCGAGGCCAGTCGTCTTCATTAGTAGCTGCAAACTCAACTGGGCATATCAAAATTTTGGAAATGGTTTAG 2646 41.38 MGFFAAWGTMGLLQKLNSTLSWRCFQEDGDIDMFLGLGVSFKWITMEGSSDHLRNQDDISGVCEEDILADPYVRSHKWSDISLRQWLDKPGRSVDALECLHIFRQIVEIVNIAHAQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEDGLNSQMAEVKPSSSPFPSSLGSEGFRSVMTPINALSETSCMQSSSVYAAQVSLNEGSGKCRKKDRRHIDETEDKMQSFPMKQILAMETTWYTSPEETSDGPSSSASDIYRLGVLLFELFCSFSSREEKSRTMSSLRHRVLPTQLLLKWPKEASFCLWLLHPEPTNRPKLSDILQSEFLNEPKDDLEEREAAIKLRKKIEEQELLLEFLLLMQQRKQEAAHKLQDTISFLCSDIEQVMRHQTNFKKKIGSRTDLVKDNHLPLNLPSMPPVRNTDSAGLGSRKRFRPGILTHDIEACDDNLDDCEKSNLDNENEQGVLFKSSRLMKNFKKLELAYFLMRGRVNKPSRQFVKHSSISSDGRGSVVLTERSSVNNLASKESCNDKRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLSFDRDGEFFATAGVNRKIKVFGYDSIVNEDRDIHYPVVEMASRSKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMGEHERRVWSIDFSSADPTILASGSDDGSVKLWSINQGISIGTIRTKANVCCVQFPVDSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHNKTVSYVKYIDSSTLVSASTDNTLKLWDLSMCTSRVVDSPVQSFTGHMNIKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSYKFQMDPLSNHEMDDSAQFISSVCWRGQSSSLVAANSTGHIKILEMV 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31243764 31252011 - CcPI632755_11g018560.1 Cco11g1856 193092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1856 881 PRINTS G protein beta WD-40 repeat signature 764 778 IPR020472 -
Cco11g1856 881 PRINTS G protein beta WD-40 repeat signature 637 651 IPR020472 -
Cco11g1856 881 PRINTS G protein beta WD-40 repeat signature 680 694 IPR020472 -
Cco11g1856 881 SMART WD40_4 786 825 IPR001680 GO:0005515(InterPro)
Cco11g1856 881 SMART WD40_4 653 693 IPR001680 GO:0005515(InterPro)
Cco11g1856 881 SMART WD40_4 611 650 IPR001680 GO:0005515(InterPro)
Cco11g1856 881 SMART WD40_4 739 777 IPR001680 GO:0005515(InterPro)
Cco11g1856 881 SMART WD40_4 696 735 IPR001680 GO:0005515(InterPro)
Cco11g1856 881 SMART WD40_4 565 600 IPR001680 GO:0005515(InterPro)
Cco11g1856 881 SMART WD40_4 840 879 IPR001680 GO:0005515(InterPro)
Cco11g1856 881 SUPERFAMILY WD40 repeat-like 569 878 IPR036322 GO:0005515(InterPro)
Cco11g1856 881 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 543 881 - -
Cco11g1856 881 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 746 779 - -
Cco11g1856 881 Coils Coil 336 356 - -
Cco11g1856 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 746 779 IPR001680 GO:0005515(InterPro)
Cco11g1856 881 SUPERFAMILY Protein kinase-like (PK-like) 78 342 IPR011009 -
Cco11g1856 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 660 702 IPR001680 GO:0005515(InterPro)
Cco11g1856 881 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 660 697 - -
Cco11g1856 881 MobiDBLite consensus disorder prediction 412 431 - -
Cco11g1856 881 Gene3D Transferase(Phosphotransferase) domain 1 79 342 - -
Cco11g1856 881 Pfam WD domain, G-beta repeat 572 599 IPR001680 GO:0005515(InterPro)
Cco11g1856 881 Pfam WD domain, G-beta repeat 657 693 IPR001680 GO:0005515(InterPro)
Cco11g1856 881 Pfam WD domain, G-beta repeat 742 777 IPR001680 GO:0005515(InterPro)
Cco11g1856 881 Gene3D - 546 881 IPR015943 GO:0005515(InterPro)
Cco11g1856 881 PANTHER PROTEIN SPA1-RELATED 2 73 881 IPR044630 GO:0009640(InterPro)
Cco11g1856 881 SMART serkin_6 29 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1856 881 ProSiteProfiles Protein kinase domain profile. 1 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1856 881 ProSitePatterns Trp-Asp (WD) repeats signature. 764 778 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1856 K26557 - - csv:101205812 1573.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0204 Cco-Chr1:1933291 Cco11g1856 Cco-Chr11:31243764 7.20E-162 dispersed
Cco02g1937 Cco-Chr2:32281515 Cco11g1856 Cco-Chr11:31243764 1.00E-97 dispersed
Cco09g1380 Cco-Chr9:17110760 Cco11g1856 Cco-Chr11:31243764 8.30E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g218 . . . Bda09g00507 . . . Bma13g00954 . . . Cma09g00865 . . . Cpe06g00688 Cpe02g00702 Bhi09g03428 Tan01g4394 . . . Mch11g1069 . Cla11g01762 Cam11g1829 Cec11g1849 Cco11g1856 Clacu11g1989 Cmu11g1798 Cre11g2206 . . . . . Csa04g02344 Chy07g00076 . . . . . Bpe11g00483 . . Bma14g00239 . . Cmo09g00854 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45