Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1857 ATGTCCATCGTTGTCCCTAGCCTCCGGCAAAGAAACCACAATCCTAGGCCGGTGGAGCTTCTGATTGGATTGGCTTTGGAGTCCACTTCTTTTCGAGTTACGGGAGATGAAAGTCGAAGTTGTGGGGTTGGAGGTATAATGACTGGAGGGTCATTGGGTCTTCGTACGGGAAGCTATGCATCACTGCATCAACAGCTACAAAATGGTGCTTTGCAAAATTCAGGAGCGTCACTGCTTGTGCACAAGCCTTCGAAAACAAATCTTTCAAGTTCAAGAGAGAGGGAGAGAGTTATGCCCTTGTTTTGTCGATACTTTGGTCGGAGAAGGGTTGCGATGCTCCTCTTGTTTATTCTTGCACTTTTGGTTTTTGTATTTGGATCCTTTGCAGTCAGTAGAGATAGCAGCGATTTAAAGCCACCTTATGAAGAAACTACACTAAGAGATTTGATAAATCCTGCCGTTCCAAGACCAGAAAACTTCAAGGATATTATAACTTCTACACATGGGAATTTGATTGGAAGAACTGAAAATTTATCTCTGCTTCCTCCTTTCCCTCATTCAAATCGTTCTTTAATCTCTAATTTTTTTCCTCGACATTCCCTTTCATCGCCACATCCATGCAAAAACTTTGCGCTACCTCCTCCAGCTCCAGCTAACGGAAAGCGGACTGGAGCACGTCCCTGTCCAGTATGTTATATCCCTGTGGAGCAGGCTATTGCTAGTATGCCAATTGCACCATCAATATCTCCTGTACTACGCAGTTTAACATATATTCATGATGAAAATCCAATAAAAACAGAACCACATGGGGGGTCTGATTTTGGTGGATATCCTTCTTTAAGACAGAGAAATGATTCTTTTAATATAAAAGAGTCGATGACAGTTCACTGTGGATTTGTTAAAGGAAGTAAACCTGGTAATCAGAGTGGTTTCGATATTGATGAAGCTGACCTTCTGGAGTTGGAGGAGTTTCATGAGGTCATTGTTGCGTCAGCCATATTTGGAAACTACGATGTATTACAGCAGCCTATTAATATTAGTGAAGAATCAAAAAGACTTGTTCCTTTCTACATGTTCATTGATGAAGAAACAGAAGCATATATGAAGAACTCTAGCCTCTTAGATAGCAGAAAGAGGATTGGCTTGTGGAGAATCATTGTAGTTCGTAGTGTTCCTTATGCTGATTCAAGACGTAATGGCAAGATTCCAAAGCTTCTTCTGCATAGGCTTTTCCCGAACATTCAATACTCTATATGGATAGATGGAAAACTTCAGCTTGTTGTGGATCCATTTCAAATTCTTGAGAGGTTCTTGTGGCGTCAAAATGCAACATTTGCAATTTCAAGACACTATAAACGATTTGACGTCTTTGAAGAGGCTGATGCTAATAAAGCTGCAGGAAAATATGACAATTCCTCCATTGATGAACAGATTGATTTTTATGTTAGCGAGGGTTTAACACCATATTCTTTGGCTAAGCTTCCTATAACTAGTGATGTTCCTGAAGGATGCGTTCTAATTCGAGAACATGTTCCTATAACAAATTTATTCACTTGCCTTTGGTTCAATGAAGTTGATCGTTTTACTTCAAGAGACCAGTTAAGCTTCTCGATGGTGAGAGATAAGATAATGTCTAAAGTCAATTGGAGCATTAACATGTTCTTGGACTGTGAAAGGCGCAATTTTGTTATACAGACGTATCATAGAGAACTACTGGAACACATGCCACCTCCTGCCAGAGCAGTTATCCGTCGTCCTCCACCGGTGCCCGATGGTCATACTGTTCCTAAGCCTCTAGTTCATGTTGTTCAGAAGGCTCTACCAGTGAAGAGAAATCCTTCCAAGCGAGGAAGAAGCGATAAGAGATTTTGCAAAACATCTCTGGCTTTTGATAAGGGCTGGGCATTTGCTGGATTTGGGAAGATCTCTTCAAAGCCATATTCAGCCAAGTAA 1953 41.01 MSIVVPSLRQRNHNPRPVELLIGLALESTSFRVTGDESRSCGVGGIMTGGSLGLRTGSYASLHQQLQNGALQNSGASLLVHKPSKTNLSSSRERERVMPLFCRYFGRRRVAMLLLFILALLVFVFGSFAVSRDSSDLKPPYEETTLRDLINPAVPRPENFKDIITSTHGNLIGRTENLSLLPPFPHSNRSLISNFFPRHSLSSPHPCKNFALPPPAPANGKRTGARPCPVCYIPVEQAIASMPIAPSISPVLRSLTYIHDENPIKTEPHGGSDFGGYPSLRQRNDSFNIKESMTVHCGFVKGSKPGNQSGFDIDEADLLELEEFHEVIVASAIFGNYDVLQQPINISEESKRLVPFYMFIDEETEAYMKNSSLLDSRKRIGLWRIIVVRSVPYADSRRNGKIPKLLLHRLFPNIQYSIWIDGKLQLVVDPFQILERFLWRQNATFAISRHYKRFDVFEEADANKAAGKYDNSSIDEQIDFYVSEGLTPYSLAKLPITSDVPEGCVLIREHVPITNLFTCLWFNEVDRFTSRDQLSFSMVRDKIMSKVNWSINMFLDCERRNFVIQTYHRELLEHMPPPARAVIRRPPPVPDGHTVPKPLVHVVQKALPVKRNPSKRGRSDKRFCKTSLAFDKGWAFAGFGKISSKPYSAK 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31259310 31268958 + CcPI632755_11g018570.1 Cco11g1857 193093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1857 650 PANTHER ALKALINE CERAMIDASE-RELATED 86 574 IPR006852 -
Cco11g1857 650 Pfam TOD1/MUCI70, glycosyltransferase-like domain 255 568 IPR048354 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1857 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0131 Cco-Chr8:2038133 Cco11g1857 Cco-Chr11:31259310 1.60E-69 dispersed
Cco11g0803 Cco-Chr11:9239720 Cco11g1857 Cco-Chr11:31259310 2.90E-69 dispersed
Cco04g2240 Cco-Chr4:35925334 Cco11g1857 Cco-Chr11:31259310 2.80E-49 transposed
Cco05g2182 Cco-Chr5:30619265 Cco11g1857 Cco-Chr11:31259310 3.10E-54 transposed
Cco11g1857 Cco-Chr11:31259310 Cco03g0621 Cco-Chr3:6314869 1.20E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g223 . . . . . . Bma10g00499 Bma13g00955 . . . Cma09g00866 . Car09g00779 . Cpe06g00689 . Bhi09g03417 . . . . . . Cla11g01763 . Cec11g1850 Cco11g1857 Clacu11g1990 Cmu11g1799 . Cone6ag0145 Cone9ag0170 Cone14ag1064 . Lsi04g01334 Csa04g02345 Chy07g00077 . . . Bda05g00771 . . Bpe03g00837 . . . . Cmo09g00855 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003322 2 11 1 2 2 0 1 1 0 1 1 1 1 1 1 1 0 3 1 1 1 1 1 1 1 0 1 6 2 1 47