Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1862 ATGGAGGAGGAGGCAGTTCAACAGTATATTTACGATACTCTAAGCCCACTTTCCTTCTCCGCTCTCACCACCACCGAAAAAAGCGGGGACCAATTCTCGCCGTCCGATGACCTCGAGCCCTACTCCGTTTTCCGCAACGAGATCTCTCTCTCTACTTCCCATTCTGCTCCGGCTGAGACTGCAGCACCCGAGTTTTTTTCCCTTGATGTTGCTACCGACAACGTGGATGAAATTTCGCCTTTTTATACTCCTTTGCCGGTTACTTTGCCTCTGGAAACTGAACCTAGGACGCCGGAACGTGAGGATCAGTCGAGGCTTGAAATTGGCTGGTTCCGTGGCAATAGTGGATTCAAGAGCCCTATGCTACAGTTGCATAAAGAAATAGTTGATTTTTGTGAGTTTCTATCTCCAACTGAAGAAGAACGTGTTGCACGTGAGAGTGCAGTAGAAAGGGTTTTTAGTGTTGTCAAACATATATGGCCTCACTGTAAGGTTGAAGTTTTTGGATCGTTTCAGACAGGACTTTATCTTCCAACCAGTGACGTTGATGTTGTTATTCTGGGTTCAGGCATCCCAAAACCACAGCTTGGTCTGCAAGCTCTTTCCAGGGCTTTATCACAAAAGGGAATAGCAAGAAAGATTCAGGTTATTGGAAAGGCTCGTGTGCCAATAATTAAGTTTGTTGAAAAGCAAAGTGGTATATCTTTTGATATAAGTTTTGACGTGCAGAATGGACCAAAGGCTGCTGGTTTTATAAAGGGTGCAATCAGTAAGTGGCCTCCTTTACGTCCTTTGTGCTTGATCCTAAAGGTGTTTTTGCAGCAGCGAGAACTGAATGAGGTATATTCTGGTGGACTAGGTTCGTATGCACTTCTTACCATGCTTATGGCGATGTTGCAGAGTTTCAACGGGCCGCACTCTTCTCTTGAACACAATCTGGGAGTCCTTTTGGTACATTTCTTTGATTTTTATGGTCGCAAATTGAATACTTCTGATGTTGGTGTATCTTGCAATGTGGGAGGCATTTTTTTCTCGAAGAGTTACAGAGGATTCGTGACGAAAGGACGCCCATTTCTTCTTTCCATTGAGGATCCTCAGGCCCCAGATAATGACATCGGCAAGAATTCCTTCAATTACTTCCAGATAAGATCTGCATTTGCAATGGCATTTTCGATCTTGACAAATGTTAAGACCATTTTAGGGCTGGGTCCAAACCGGAGTATTCTTGGCACAATAATCAGACCCGATCCAGTCTTATTGAAGCGAAAAGGTGGCAAAGATGGAGAAGTGACCTTTAATTCTCTACTGCCTGGAGCAGGGGAACCTGTACAACAACCAGATTATGGTGATGATCAGGAGATTCTGTGTAATTGGCAGTTTGGTGATGATGAACCATTGCCACGAGGGAACGGTACATCCGAAAATTTTGGTACATCTTCCTCTAAAAAAAAGAGAAAATCTCGTGAGAAGTCCAGAAAGAAGGAAAAAGAAAACCATATGAGTAAGCACAGGCATGGAGACAATGGATGCAGTAAAGAGAAGAGTTCAAAAAAGAAACGATGGAGATCGAATGGCAGTGATGCCAATGCTGATGAGAGGGTTTCTGCGGCCATTGCTGGAGCTTGTACGTTCAGACATCATACTCAACCTGGAGGTGTAGTGGCCCAGTCTACTTTCAGGACAAAAGGCACAACAGGGCGGTCAGGTTTTGGAAGTAAAGAATCACAAGATACATCATCTCAGATGACGAACAACATCAATACAGTTGAGGAAACAACAGATGATATATTGGTAGTTCATCAAAGGTTTATAGTGGGATGA 1821 43.82 MEEEAVQQYIYDTLSPLSFSALTTTEKSGDQFSPSDDLEPYSVFRNEISLSTSHSAPAETAAPEFFSLDVATDNVDEISPFYTPLPVTLPLETEPRTPEREDQSRLEIGWFRGNSGFKSPMLQLHKEIVDFCEFLSPTEEERVARESAVERVFSVVKHIWPHCKVEVFGSFQTGLYLPTSDVDVVILGSGIPKPQLGLQALSRALSQKGIARKIQVIGKARVPIIKFVEKQSGISFDISFDVQNGPKAAGFIKGAISKWPPLRPLCLILKVFLQQRELNEVYSGGLGSYALLTMLMAMLQSFNGPHSSLEHNLGVLLVHFFDFYGRKLNTSDVGVSCNVGGIFFSKSYRGFVTKGRPFLLSIEDPQAPDNDIGKNSFNYFQIRSAFAMAFSILTNVKTILGLGPNRSILGTIIRPDPVLLKRKGGKDGEVTFNSLLPGAGEPVQQPDYGDDQEILCNWQFGDDEPLPRGNGTSENFGTSSSKKKRKSREKSRKKEKENHMSKHRHGDNGCSKEKSSKKKRWRSNGSDANADERVSAAIAGACTFRHHTQPGGVVAQSTFRTKGTTGRSGFGSKESQDTSSQMTNNINTVEETTDDILVVHQRFIVG 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31291567 31298308 + CcPI632755_11g018620.1 Cco11g1862 193098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1862 606 Pfam Cid1 family poly A polymerase 312 370 IPR002058 -
Cco11g1862 606 Gene3D - 120 395 - -
Cco11g1862 606 SUPERFAMILY PAP/OAS1 substrate-binding domain 260 398 - -
Cco11g1862 606 FunFam Poly(A) RNA polymerase cid14 238 395 - -
Cco11g1862 606 Pfam Poly(A) RNA polymerase, mitochondrial-like, central palm domain 124 245 IPR054708 -
Cco11g1862 606 MobiDBLite consensus disorder prediction 459 529 - -
Cco11g1862 606 PANTHER POLY(A) RNA POLYMERASE 94 490 IPR045862 GO:0003729(PANTHER)|GO:0004652(PANTHER)|GO:0005730(PANTHER)|GO:0031123(PANTHER)|GO:0031499(PANTHER)|GO:1990817(InterPro)
Cco11g1862 606 MobiDBLite consensus disorder prediction 493 527 - -
Cco11g1862 606 Gene3D Beta Polymerase, domain 2 137 245 IPR043519 -
Cco11g1862 606 CDD NT_PAP_TUTase 144 253 - -
Cco11g1862 606 FunFam non-canonical poly(A) RNA polymerase PAPD5 137 245 - -
Cco11g1862 606 MobiDBLite consensus disorder prediction 558 582 - -
Cco11g1862 606 SUPERFAMILY Nucleotidyltransferase 120 272 IPR043519 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1862 K03514 - - csv:101206043 872.848
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g231 . Blo03g01544 . Bda09g00502 . Bpe08g01027 . . . . . Cma09g00871 . Car09g00783 Sed07g2511 Cpe06g00694 . Bhi09g03406 Tan01g4404 Cmetu07g1473 . Hepe01g1380 Mch11g1076 . Cla11g01768 Cam11g1834 Cec11g1855 Cco11g1862 Clacu11g1995 Cmu11g1804 Cre11g2212 Cone6ag0140 . . . Lsi04g01330 Csa04g02350 Chy07g00083 . . . . . . . Bma07g01180 . . . Cmo09g00859 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012201 1 1 1 0 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 26