Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1873 ATGATGAACAAATCCGTGGACGAAGACGAAGAAGAAGAGTGTTTCTACGAATCTCTTGATCGCATTGCCTCCTCAGGTTCATGTTCCACTTCCAATTCCGATGATGACAGAGATTCAAACGCCAACTCCCCTAATTATGATTCCGAGCACCCTTTTCCGATACCAAAATTCCCAATGGCTGTTTCCAACTATGATATTTGGATCTCCGAGCCGGCTTCTGTGTTGGAGCGCCGTAGCCGTCTTCTTCGAGAAATGGGTCTTAGCGGTGACCCTTCTCTTTCACGGGCTAATACGGCCTTGGAATTGGATCATAGAGAAAAGGGTGTTGGCGATTTTGATCGATCGGTGTCGTCGGATTATTTGACTAGTCAACAACAGCAGCCCCCTGCAATCATCCGCTCGAAATCGGATGGTGCTGCAGATTGTAGCAGGAATGCGAGCCCTTCACACCCTTCCGGCAGCGATACTAATAACCAGTGTAATTATTCGTCCTCCATTAATTCTCCTTCAATTCTTTCATTTCATTCGGTCAATGAGACCACCACTTCATTTGCAAATAACCGTAATCGTGTAGTTGTTAAGTCTCGAAGCTGTAAGAGCGATGGAGCTCCATCGGTTTCTTTCGCTACTTCACAGCATAAGCCGCCTTCTGGGAGAAATTGTAGATGGGCGGATGAGATTCGAAGTGATTCCTTGGTTGTGAATGCCAATTCGGATCCTGATCCATCGTTGATGTCTCAGAATGGTGTGAATAAACGAGAGGTTAGCGAGGATTCGGCTTGTTCTACTAGTGGAAAGGCCAATGAGAAAGCCTGCACTATCAAAGATCTTGACAATGGGAAAGAGTTTGTTGTGAACGAGATTACTGAAGATGGTATGTGGAACAAGCTCAAGGAAGTGGGGACTGGGAGACAGTTGACCATGGAGGAGTTTGAGATGTGTGTTGGGCATTCGCCTATTGTTCAAGAACTGATGCGGCGGCAGAATGTGGAGGATGGTTGTAACGAAAATGTCGATTTAAATGTGAATGGAGATAGCGGTAGCAGTTCGAAATTGAAAAAGAAAGGAGGCTGGTTTAAGAGTATAAAGAGTGTTGCTAGCACAGTGAAGGGCCAAAAGGAGAGACGTAGCAGTGATGAGAGGGATACTTCATCTGAGAAGGGTGGACGACGGTCAAGCTCTGCAACAGATGATAGCCAAGATGTTTCCTTTCATGGTCCAGAGAGAGTAAGAGTTCGGCAATATGGAAAATCAAGTAAAGAATTGTCTGCACTCTACAAGAGCCAAGAGATACAGGCCCACAGTGGGTCAATATGGACCATTAAGTTTAGTTTGGATGGGAAGTACCTTGCAAGTGCAGGAGAGGACCGTATTATTCATGTTTGGCAGGTCGTTGAGTCGGAGAAAAAGGGCGATCTACTGATGGAGAAACCTGAAGAAGGGAACTTGAGTTTCTTATTTGCAGCTAATGAGTCACCAGAGCCAACTTCACTATCTCCAAATGTGGATGGCCATCATGAGAAGAAGAGAAGAGGGAGATCTTCTATTAGTCGGAAATCAGTGAGCTTGGAACATGTGATTGTGCCGGACACTGTATTTGGGCTTTCAGAAAAACCTATCTGTTCATTCCAGGGGCATCTTGATGTTGTGCTTGACCTATCTTGGTCCAAATCTCAGCATTTGCTCTCGTCTTCAATGGATAAAACTGTGCGGCTCTGGCACTTGTCAAGCAAATCCTGTTTGAAAATATTTTCGCACAGTGATTATGTAACTTGCATCCAGTTTAATCCTATTGATGATAGATACTTCATTAGTGGATCGTTAGATTCAAAAGTTCGTATATGGAGTATCCCAGATCGTCAAGTTGTTGATTGGAGCGACTTGCATGAGATGGTGACCGCTGCTTGCTATACACCTGATGGCAAGGGTGCTTTGGTTGGTTCTTACAAGGGAAGCTGCCGATTGTACAGTACTTCTGAGAACAAGATGCAGCAAAAAAGTGAGATAAATCTGCAGAACAAGAAGAAAAAATCTAGTCACAAGAAAATAACTGGGTTCCAGTTTGCTCCAGGAAGTTCTTCAGAAGTGCTCATTACATCTGCAGATTCACGCATCCGAGTGGTTGATGGTGTCGATCTGGTCCAGAGGTTTAAAGGGTTCCGAAATACAAACAGCCAAATCTCTGCCTGCCTTTCGGCGAATGGCAGGTATGTGATATCGGCCAGTGAGGACTCTCATGTTTACGTATGGAAGCATGAAGCAGATTCTCGACCGAGTAGGAGCAAAGGAGTGACAGTCGTTCGATCATACGAGCATTTCCACTGTCCGGATGTCTCTGTGGCTATTCCTTGGCCTGGTATGGGTGACACATGGGGACTTAACGACGATTATTGTGGGGATGACAATGTGATTGAAAATCATCACGACGAAGTCTTCTCCGCTAACCATCCCCCTTCACCAGTGGAGGCAGAAAACGGCAGTGAGGATTCACTGTTGGCTTCTGGTTGCACCAACAGCCCTCTTCATGGAACTCTTTCAAGTGCAACCAACAGCTACTTCTTTGACAGAATCTCAGCAACATGGCCAGAGGAAAAGCTTGTTTTGAACACTCGGAACAACCGTAGCCCTCATTCCAGTATGGACATTGCCAGCGGAATGTTCCAAGGCTCATCAGCATGGGGTATGGTGATCGTAACTGCAGGTCTTCGAGGCGAAATCAGAACTTTCCAAAATTTTGGATTTCCAAGACAATGTTGGGTGAGATTTGTAATGTTAGCAGAATTAAGTTTCTTGTTACCCTGTGCTTGTGCTCGTCGGGCGGGGGCGATACCGGGAGCCAGTCTGGTGGAGAGTGGCGGGAAAAAGTATAGATTTGTGAAGGGAAAAACTGAAAAGGGTGATTTAGCTTCTCAAACCATCGATTTTGTATTCTCTGGTTGCTCCTTTTTGGTTCTAATGGCTCTCCAAGCTGCTTCTCTGGTTTCCCCTGCTCTCTCTGTTCCTAAAGAGGGGAAATCTTGTGTATGCTTGAAGGATTCTAGTTTTTTTGGGATTTCATTCTCCGATCATCTCAAATCTGAATTCACTTCATCTACATTGAGGTGTAAGATAGAATTGAACCAGCAGATTGGTGCAATCAGGGCTCAAACAACTGCTACCACAACTCCAGCAGTAAACAAAGCTGCCCCAGATGGGAAGAAAACTCTCAGAAAAGGTAGTGTTGTGGTCACTGGAGCCTCTTCTGGGTTGGGATTAGCCACAGCCAAGGCTCTGGCTGAAACTGGAAAATGGCATGTCATTATGGCTTGTAGAGACTTTCTCAAGGCTGAAAGAGCTGCCAAATCTGCTGGCATTGCCAAGGAAAACTACACTGTTATGCATTTGGACCTTGCCTCGCTCGACAGTGTTCGCCAGTTTGTCGACAACTTCAGGCAGTCAGGCAGGCCACTTGATGTTCTTGTGTGCAATGCTGCTGTTTACCTACCAACTGCTAAAGAGCCTACCTTCACTGCTGAAGGTTTTGAACTTAGTGTTGGAACTAACCACCTTGGTCATTTCCTCCTCTCCCGTTTGTTGTTAGAGGATTTGAACAAATCTGATTACCCCTCAAGACGGCTCATCATTGTCGGATCAATAACCGGGAACACAAATACCTTGGCTGGAAATGTACCTCCTAAGGCCAACCTTGGAGACCTCAGGGGACTTGCTGGTGGACTAAACGGCCTAAACAGCTCGTCGATGATTGACGGTGGTGAGTTTGATGGTGCCAAGGCATACAAGGACAGCAAAGTGTGCAACATGCTCACCATGCAAGAGTTCCACAGGCGGTACCACGAGGAAACCGGCATCACATTTGCTTCCCTCTACCCTGGATGCATTGCTACAACTGGTTTGTTCAGAGAGCATATTCCCTTGTTCAGATTACTTTTCCCTCCATTCCAAAAGTACATCACCAAGGGCTATGTTTCAGAAGAAGAAGCAGGGAAAAGACTGGCTCAGGTTGTGAGCGAGCCGAGCTTGACAAAATCAGGTGTGTATTGGAGCTGGAACAAGAACTCGGCTTCGTTTGAGAATCAGTTGTCTCAAGAAGCAAGTGATGTAGAGAAAGCTCGTAAAGTGTGGGAGCTGAGTGAGAAACTTGTTGGTTTGGCTTAA 4155 45.85 MMNKSVDEDEEEECFYESLDRIASSGSCSTSNSDDDRDSNANSPNYDSEHPFPIPKFPMAVSNYDIWISEPASVLERRSRLLREMGLSGDPSLSRANTALELDHREKGVGDFDRSVSSDYLTSQQQQPPAIIRSKSDGAADCSRNASPSHPSGSDTNNQCNYSSSINSPSILSFHSVNETTTSFANNRNRVVVKSRSCKSDGAPSVSFATSQHKPPSGRNCRWADEIRSDSLVVNANSDPDPSLMSQNGVNKREVSEDSACSTSGKANEKACTIKDLDNGKEFVVNEITEDGMWNKLKEVGTGRQLTMEEFEMCVGHSPIVQELMRRQNVEDGCNENVDLNVNGDSGSSSKLKKKGGWFKSIKSVASTVKGQKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGPERVRVRQYGKSSKELSALYKSQEIQAHSGSIWTIKFSLDGKYLASAGEDRIIHVWQVVESEKKGDLLMEKPEEGNLSFLFAANESPEPTSLSPNVDGHHEKKRRGRSSISRKSVSLEHVIVPDTVFGLSEKPICSFQGHLDVVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPIDDRYFISGSLDSKVRIWSIPDRQVVDWSDLHEMVTAACYTPDGKGALVGSYKGSCRLYSTSENKMQQKSEINLQNKKKKSSHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVQRFKGFRNTNSQISACLSANGRYVISASEDSHVYVWKHEADSRPSRSKGVTVVRSYEHFHCPDVSVAIPWPGMGDTWGLNDDYCGDDNVIENHHDEVFSANHPPSPVEAENGSEDSLLASGCTNSPLHGTLSSATNSYFFDRISATWPEEKLVLNTRNNRSPHSSMDIASGMFQGSSAWGMVIVTAGLRGEIRTFQNFGFPRQCWVRFVMLAELSFLLPCACARRAGAIPGASLVESGGKKYRFVKGKTEKGDLASQTIDFVFSGCSFLVLMALQAASLVSPALSVPKEGKSCVCLKDSSFFGISFSDHLKSEFTSSTLRCKIELNQQIGAIRAQTTATTTPAVNKAAPDGKKTLRKGSVVVTGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGIAKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSDYPSRRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSSMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSQEASDVEKARKVWELSEKLVGLA 1384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31376737 31389148 - CcPI632755_11g018730.1 Cco11g1873 193109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1873 1384 MobiDBLite consensus disorder prediction 369 415 - -
Cco11g1873 1384 MobiDBLite consensus disorder prediction 492 517 - -
Cco11g1873 1384 PRINTS Glucose/ribitol dehydrogenase family signature 1281 1298 IPR002347 -
Cco11g1873 1384 PRINTS Glucose/ribitol dehydrogenase family signature 1073 1090 IPR002347 -
Cco11g1873 1384 PRINTS Glucose/ribitol dehydrogenase family signature 1148 1159 IPR002347 -
Cco11g1873 1384 MobiDBLite consensus disorder prediction 111 161 - -
Cco11g1873 1384 Pfam WD domain, G-beta repeat 429 462 IPR001680 GO:0005515(InterPro)
Cco11g1873 1384 Pfam WD domain, G-beta repeat 579 616 IPR001680 GO:0005515(InterPro)
Cco11g1873 1384 Pfam WD domain, G-beta repeat 538 573 IPR001680 GO:0005515(InterPro)
Cco11g1873 1384 Pfam WD domain, G-beta repeat 724 750 IPR001680 GO:0005515(InterPro)
Cco11g1873 1384 MobiDBLite consensus disorder prediction 140 161 - -
Cco11g1873 1384 MobiDBLite consensus disorder prediction 116 132 - -
Cco11g1873 1384 CDD LPOR_like_SDR_c_like 1071 1383 - -
Cco11g1873 1384 FunFam WD repeat-containing protein 44 524 790 - -
Cco11g1873 1384 MobiDBLite consensus disorder prediction 369 394 - -
Cco11g1873 1384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 583 617 - -
Cco11g1873 1384 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 583 IPR001680 GO:0005515(InterPro)
Cco11g1873 1384 MobiDBLite consensus disorder prediction 235 262 - -
Cco11g1873 1384 SUPERFAMILY WD40 repeat-like 427 753 IPR036322 GO:0005515(InterPro)
Cco11g1873 1384 Gene3D - 415 771 IPR015943 GO:0005515(InterPro)
Cco11g1873 1384 MobiDBLite consensus disorder prediction 22 47 - -
Cco11g1873 1384 MobiDBLite consensus disorder prediction 200 217 - -
Cco11g1873 1384 ProSiteProfiles Trp-Asp (WD) repeats profile. 583 617 IPR001680 GO:0005515(InterPro)
Cco11g1873 1384 MobiDBLite consensus disorder prediction 22 53 - -
Cco11g1873 1384 MobiDBLite consensus disorder prediction 196 219 - -
Cco11g1873 1384 PRINTS G protein beta WD-40 repeat signature 603 617 IPR020472 -
Cco11g1873 1384 PRINTS G protein beta WD-40 repeat signature 561 575 IPR020472 -
Cco11g1873 1384 PRINTS G protein beta WD-40 repeat signature 450 464 IPR020472 -
Cco11g1873 1384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 431 464 - -
Cco11g1873 1384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 543 577 - -
Cco11g1873 1384 Pfam short chain dehydrogenase 1074 1216 IPR002347 -
Cco11g1873 1384 Gene3D - 1062 1384 - -
Cco11g1873 1384 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1069 1352 IPR036291 -
Cco11g1873 1384 PANTHER WD REPEAT DOMAIN 44 13 916 IPR040324 -
Cco11g1873 1384 NCBIfam protochlorophyllide reductase 1070 1384 IPR005979 GO:0016630(InterPro)
Cco11g1873 1384 SMART WD40_4 670 709 IPR001680 GO:0005515(InterPro)
Cco11g1873 1384 SMART WD40_4 577 616 IPR001680 GO:0005515(InterPro)
Cco11g1873 1384 SMART WD40_4 424 463 IPR001680 GO:0005515(InterPro)
Cco11g1873 1384 SMART WD40_4 536 574 IPR001680 GO:0005515(InterPro)
Cco11g1873 1384 SMART WD40_4 710 751 IPR001680 GO:0005515(InterPro)
Cco11g1873 1384 SMART WD40_4 619 657 IPR001680 GO:0005515(InterPro)
Cco11g1873 1384 ProSiteProfiles Trp-Asp (WD) repeats profile. 431 464 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1873 K20241 - - csv:101208316 1706.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0167 Cco-Chr1:1609378 Cco11g1873 Cco-Chr11:31376737 2.00E-106 dispersed
Cco02g1874 Cco-Chr2:31646650 Cco11g1873 Cco-Chr11:31376737 8.70E-177 dispersed
Cco04g1012 Cco-Chr4:25745378 Cco11g1873 Cco-Chr11:31376737 2.30E-151 dispersed
Cco04g1310 Cco-Chr4:28376148 Cco11g1873 Cco-Chr11:31376737 2.60E-85 dispersed
Cco10g2085 Cco-Chr10:34201009 Cco11g1873 Cco-Chr11:31376737 2.10E-24 dispersed
Cco11g1873 Cco-Chr11:31376737 Cco01g0106 Cco-Chr1:883334 3.70E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006973 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 3 1 34