Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1893 ATGGAGTTAGGATCAAGCAATCTTTGTTCATTAGCTTCACCTGTGTTTGATGTGTCTCCTACCATATTTAACAGAATTATAGCCTTGAAGTCAGCAAAGGAGATCAGGAAATTCCTCAATGAAAGAATTAAGAGCATGAAGGCGTTGAACTTGATCCACGGGGCCGATACGTTAACTTGTTACAGGAGCCAAAGCCCATGTCGCTTCAAGCAAATGCGTTGCCCAGCAGAATGCCCGTCAAAATCACCATCAAACCATACTGACAAAGTTTGTTACGTCAGCTGTGAATCGCCTGTATGCAAAGCAGAATGCAAAAGTCCAAAACCAAACTGCAACGGTCCTGGCTCGGCATGCTTGGACCCGAGGTTCATTGGTGCTGATGGTATTGTGTTCTACTTCCACGGAAAAAGCAATGAACACTTCAGCTTGGTATCTGATCCTGACCTGCAAATCAATGCACGGTTCATTGGACTAAGGCCTGCAGGCAGATCCAGGGACTTCACATGGATTCAAGCTCTTGGTTTACTCTTCAATTCTCACTCCTTCTCACTTGAGGCCAAACGAGCAGCAACTTGGGACGACAAAGTCGATCACTTGAAATTTACTTACAACGGAAAAGAAGTAGTTATACCAGATGGTCGTCTCTTGCAATGGAGATCCTCAAAAAGCAATATTATAGTTCAAAGAACATCGACCAGCAATAGTGTCTTGGTTACTCTCCCTGAGATAGCAGAGGTATCAGTTAACGTTGTACCGATTACTAAAGAAGACAATAGAATTCATAACTATCAGATACCAAAAGATGACTGTTTCGCTCACTTGGAAGTTCAGTTCAGACTCCACGGCCTTTCGTCCAAAGTTGAAGGAGTGCTTGGAAAGACTTATCAGCCTGACTTTATTAACCCCGCAAAGCCAGGAGTTGCAATGCCTGTTGTAGGAGGTGACAAGGAGTACAGGACCTCATCGCTCCTCTCAGCCGACTGCAGTGCTTGTTTGTTTTCCCCTGCCAGAATCTCAAACAAAGTGGACCCAAAGATAACGCAAGATAGCTTCATAGACTGCTCTGGAGGAAGCACAAGTGGAAATGGAATAGTTTGCAAAAAATAA 1107 44.08 MELGSSNLCSLASPVFDVSPTIFNRIIALKSAKEIRKFLNERIKSMKALNLIHGADTLTCYRSQSPCRFKQMRCPAECPSKSPSNHTDKVCYVSCESPVCKAECKSPKPNCNGPGSACLDPRFIGADGIVFYFHGKSNEHFSLVSDPDLQINARFIGLRPAGRSRDFTWIQALGLLFNSHSFSLEAKRAATWDDKVDHLKFTYNGKEVVIPDGRLLQWRSSKSNIIVQRTSTSNSVLVTLPEIAEVSVNVVPITKEDNRIHNYQIPKDDCFAHLEVQFRLHGLSSKVEGVLGKTYQPDFINPAKPGVAMPVVGGDKEYRTSSLLSADCSACLFSPARISNKVDPKITQDSFIDCSGGSTSGNGIVCKK 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31634945 31637438 - CcPI632755_11g018930.1 Cco11g1893 193129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1893 368 PANTHER ROOT CAP DOMAIN-CONTAINING PROTEIN 55 368 - -
Cco11g1893 368 Pfam Root cap 277 333 IPR009646 -
Cco11g1893 368 Coils Coil 29 49 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1893 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0689 Cco-Chr2:6944217 Cco11g1893 Cco-Chr11:31634945 2.20E-55 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g281 . . . . . Bpe08g01042 . . . . . . . . . . Cpe02g00721 . . . . . . . Cla11g01797 Cam11g1863 Cec11g1887 Cco11g1893 Clacu11g2026 Cmu11g1832 Cre11g2238 Cone6ag0118 . . . . . . . . . . . . . Bma07g01197 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011478 0 1 0 2 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 2 28